Rh6DG354900

metal-nicotianamine transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0001164
Physical Location & Seq
Forward (+)
55364258 .. 55365329
1072 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG354900.1

Sequence Viewer

Length: 372 bp
ATGGACAAGCAAATAACTATGAGGTCTATGGTCGCAAGCTTTTTTCTTAGCATCATTTTCCACTTCCTCGTGCGCAAGCTTAATCTTACAACTGGTGTCATATGGTATGCCGCGGCGGGGCTATTGGGATTCGCACTGCTGAAAGGATACACTGTCTTGCTTCAAAAGTTAGGTATGTTGAAGCAGCCTTTCACTCGTCAAGAAAACACAGTGATTCAAATCTGTGTTGTGGGTTCGTCTGCAATAGCCTTCAGCAGCGACATGACGAGTTATTTACTATGGATGAGCCCTCTTGTAGCTGCTCAGGGAGATGCAGGCAACACTTTAATCAACATCAAGAGGCCTTCAATTCCATGGATGACGAATGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0008150 GO:0016020 GO:0022857 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
OPT

Protein Analysis

123

Amino Acids

13.61

Weight (kDa)

9.92

Isoelectric Point (pI)

39.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
OPT PF03169 4 - 95 2.3e-14 OPT oligopeptide transporter protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 74
AccII CGCG 1 cut(s) 113
AciI CCGC 3 cut(s) 111, 113, 116
AcuI CTGAAG 1 cut(s) 235
AfiI CCNNNNNNNGG 1 cut(s) 117
AgsI TTSAA 4 cut(s) 164, 181, 218, 348
AluBI AGCT 3 cut(s) 39, 79, 299
AluI AGCT 3 cut(s) 39, 79, 299
AoxI GGCC 1 cut(s) 341
ApeKI GCWGC 3 cut(s) 184, 255, 299
AspLEI GCGC 1 cut(s) 75
BanII GRGCYC 1 cut(s) 290
BauI CACGAG 1 cut(s) 68
BbvI GCAGC 3 cut(s) 196, 267, 286
BciVI GTATCC 1 cut(s) 140
BfuI GTATCC 1 cut(s) 140
BisI GCNGC 5 cut(s) 111, 114, 185, 256, 300
BlsI GCNGC 5 cut(s) 112, 115, 186, 257, 301
BmsI GCATC 2 cut(s) 60, 301
Bpu10I CCTNAGC 1 cut(s) 303
BsaBI GATNNNNATC 1 cut(s) 218
BsaJI CCNNGG 2 cut(s) 111, 353
Bsc4I CCNNNNNNNGG 1 cut(s) 117
Bse1I ACTGG 1 cut(s) 97
Bse8I GATNNNNATC 1 cut(s) 218
BseDI CCNNGG 2 cut(s) 111, 353
BseGI GGATG 2 cut(s) 288, 363
BseJI GATNNNNATC 1 cut(s) 218
BseLI CCNNNNNNNGG 1 cut(s) 117
BseMII CTCAG 1 cut(s) 317
BseNI ACTGG 1 cut(s) 97
BseXI GCAGC 3 cut(s) 196, 267, 286
Bsh1236I CGCG 1 cut(s) 113
BshFI GGCC 1 cut(s) 343
BslI CCNNNNNNNGG 1 cut(s) 117
BsmI GAATGC 1 cut(s) 370
BsnI GGCC 1 cut(s) 343
Bsp1286I GDGCHC 1 cut(s) 290
Bsp19I CCATGG 1 cut(s) 353
BspACI CCGC 3 cut(s) 111, 113, 116
BspANI GGCC 1 cut(s) 343
BspCNI CTCAG 1 cut(s) 316
BspFNI CGCG 1 cut(s) 113
BsrI ACTGG 1 cut(s) 97
BssECI CCNNGG 2 cut(s) 111, 353
BssSI CACGAG 1 cut(s) 68
BssT1I CCWWGG 1 cut(s) 353
Bst2BI CACGAG 1 cut(s) 68
Bst4CI ACNGT 2 cut(s) 154, 211
BstC8I GCNNGC 3 cut(s) 37, 77, 316
BstDEI CTNAG 2 cut(s) 47, 303
BstDSI CCRYGG 2 cut(s) 111, 353
BstF5I GGATG 2 cut(s) 288, 363
BstFNI CGCG 1 cut(s) 113
BstHHI GCGC 1 cut(s) 75
BstUI CGCG 1 cut(s) 113
BstV1I GCAGC 3 cut(s) 196, 267, 286
BsuI GTATCC 1 cut(s) 140
BsuRI GGCC 1 cut(s) 343
BtgI CCRYGG 2 cut(s) 111, 353
BtsCI GGATG 2 cut(s) 288, 363
BtsI GCAGTG 1 cut(s) 134
BtsIMutI CAGTG 3 cut(s) 134, 150, 216
Cac8I GCNNGC 3 cut(s) 37, 77, 316
CfoI GCGC 1 cut(s) 75
Cfr42I CCGCGG 1 cut(s) 114
CviAII CATG 3 cut(s) 262, 354, 369
CviJI RGCY 8 cut(s) 39, 79, 121, 187, 248, 288, 299, 343
CviKI_1 RGCY 8 cut(s) 39, 79, 121, 187, 248, 288, 299, 343
DdeI CTNAG 2 cut(s) 47, 303
Eco130I CCWWGG 1 cut(s) 353
Eco147I AGGCCT 1 cut(s) 343
Eco24I GRGCYC 1 cut(s) 290
Eco57I CTGAAG 1 cut(s) 235
EcoT14I CCWWGG 1 cut(s) 353
EcoT22I ATGCAT 1 cut(s) 370
EcoT38I GRGCYC 1 cut(s) 290
ErhI CCWWGG 1 cut(s) 353
FaeI CATG 3 cut(s) 265, 357, 372
FatI CATG 3 cut(s) 261, 353, 368
FauI CCCGC 1 cut(s) 109
FauNDI CATATG 1 cut(s) 101
Fnu4HI GCNGC 5 cut(s) 111, 114, 185, 256, 300
FokI GGATG 1 cut(s) 295
FriOI GRGCYC 1 cut(s) 290
Fsp4HI GCNGC 5 cut(s) 111, 114, 185, 256, 300
FspI TGCGCA 1 cut(s) 74
GlaI GCGC 1 cut(s) 74
GluI GCNGC 5 cut(s) 111, 114, 185, 256, 300
HaeIII GGCC 1 cut(s) 343
HhaI GCGC 1 cut(s) 75
Hin1II CATG 3 cut(s) 265, 357, 372
Hin6I GCGC 1 cut(s) 73
HinP1I GCGC 1 cut(s) 73
HindIII AAGCTT 2 cut(s) 37, 77
HinfI GANTC 2 cut(s) 129, 214
Hpy188III TCNNGA 2 cut(s) 200, 337
HpyAV CCTTC 2 cut(s) 259, 354
HpyCH4III ACNGT 2 cut(s) 154, 211
HpyCH4V TGCA 3 cut(s) 242, 314, 368
HpyF3I CTNAG 2 cut(s) 47, 303
Hsp92II CATG 3 cut(s) 265, 357, 372
HspAI GCGC 1 cut(s) 73
KspI CCGCGG 1 cut(s) 114
LpnPI CCDG 3 cut(s) 78, 290, 300
Lsp1109I GCAGC 3 cut(s) 196, 267, 286
LweI GCATC 2 cut(s) 60, 301
MhlI GDGCHC 1 cut(s) 290
MluCI AATT 1 cut(s) 348
MnlI CCTC 4 cut(s) 15, 77, 300, 333
Mph1103I ATGCAT 1 cut(s) 370
MseI TTAA 2 cut(s) 81, 326
MspA1I CMGCKG 1 cut(s) 113
Mva1269I GAATGC 1 cut(s) 370
MvnI CGCG 1 cut(s) 113
NcoI CCATGG 1 cut(s) 353
NdeI CATATG 1 cut(s) 101
NlaIII CATG 3 cut(s) 265, 357, 372
NsbI TGCGCA 1 cut(s) 74
NsiI ATGCAT 1 cut(s) 370
PceI AGGCCT 1 cut(s) 343
PctI GAATGC 1 cut(s) 370
PfeI GAWTC 2 cut(s) 129, 214
PkrI GCNGC 5 cut(s) 112, 115, 186, 257, 301
SacII CCGCGG 1 cut(s) 114
SaqAI TTAA 2 cut(s) 81, 326
SatI GCNGC 5 cut(s) 111, 114, 185, 256, 300
SduI GDGCHC 1 cut(s) 290
SetI ASST 5 cut(s) 26, 41, 81, 175, 301
SfaNI GCATC 2 cut(s) 60, 301
Sfr303I CCGCGG 1 cut(s) 114
SgrBI CCGCGG 1 cut(s) 114
Sse9I AATT 1 cut(s) 348
SseBI AGGCCT 1 cut(s) 343
SsiI CCGC 3 cut(s) 111, 113, 116
StuI AGGCCT 1 cut(s) 343
StyI CCWWGG 1 cut(s) 353
TaaI ACNGT 2 cut(s) 154, 211
TasI AATT 1 cut(s) 348
TauI GCSGC 2 cut(s) 113, 116
TfiI GAWTC 2 cut(s) 129, 214
Tru1I TTAA 2 cut(s) 81, 326
Tru9I TTAA 2 cut(s) 81, 326
TscAI CASTG 3 cut(s) 141, 157, 216
TseI GCWGC 3 cut(s) 184, 255, 299
TspRI CASTG 3 cut(s) 141, 157, 216
Zsp2I ATGCAT 1 cut(s) 370
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.