Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0022360.1

Orthogroup ID

OG0001164

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 709

Gene Structure 709 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0022360.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 709 bp

cgacaatgatcaagctggaacacaaatggttcaggctcaaaatgactcgaccgaaaaggcattcagagacacggaggtgcctccatggcacaagcaaataactgtgaggtccatggtcacaagtttttttcttagcatcatcttcaacttcatcgtgtgcaagctcaatctcaccactggtgtaataccatctctaaatgtcgcggcggggctgctgggattcgcaatcatgaaaggatacactgccttacttgacaagttaggtctgttgaagcagcctttcactcgtcaagaaaacacagtgattcaaacctgtgttgtggcctcgtctgggatagcctttagcagcggcatggggagttatttactagggatgagccctctagtagctgctcagggagatgcaggcaacactctaatcaacatcaagaggcttgcgattccgtggatgacaggatatctcttcacagtcagcttcgttgggctgttttcaatgatacccttgagaaagatgatgatcattgatagaaaactaacgtacccaagtggaacagcaacagcgcacctcatcaacagcttccacacccccaaaggagccaagaaggcagcgagacaggttgctgttctcttcaagagctgctgcggcagctttgcgtggtccttttttcagtggtttttcgcggcttcggatggctgtgggtttactagc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0008150 GO:0016020 GO:0022857 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

OPT

Protein Analysis

236

Amino Acids

25.68

Weight (kDa)

9.51

Isoelectric Point (pI)

26.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001164)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65730
fragaria_vesca	FvH4_1g25380 FvH4_4g36810
malus_domestica	MD13G1006700.v1.1 MD16G1001100.v1.1
prunus_persica	Prupe.1G346200_v2.0.a1 Prupe.1G346200_v2.0.a1
pyrus_communis	pycom13g00560 pycom16g00430
rosa_chinensis	RchiOBHm_Chr2g0123411 RchiOBHm_Chr4g0446541 RchiOBHm_Chr5g0030651 RchiOBHm_Chr5g0030671 RchiOBHm_Chr6g0294131
rosa_laevigata	RLG00000005650 RLG00000011896 RLG00000018750 RLG00000018751 RLG00000033236 RLG00000033243
rosa_multiflora	Rmu_co8173216.1_g000001 Rmu_sc0002840.1_g000001 Rmu_sc0003238.1_g000020 Rmu_sc0005037.1_g000008 Rmu_sc0005876.1_g000010 Rmu_sc0008328.1_g000001 Rmu_sc0022360.1_g000001 Rmu_ssc0000144.1_g000011 Rmu_ssc0000144.1_g000013
rosa_roxburghii	Rroxscaffold_1G00049650 Rroxscaffold_5G00386960 Rroxscaffold_7G00173620
rosa_rugosa	Rorug04G0372300 Rorug05G0119100 Rorug06G0241800
rosa_samantha	Rh2AG304200 Rh2BG312200 Rh2CG290700 Rh2DG328200 Rh4AG434000 Rh4BG443200 Rh4CG460500 Rh4DG441800 Rh5AG211400 Rh5AG211600 Rh5BG210500 Rh5CG234100 Rh5DG215400 Rh5DG215700 Rh6BG361000 Rh6CG368300 Rh6DG354900
rosa_wichuraiana	Rw2G024350 Rw4G037100 Rw5G019350 Rw5G019390 Rw6G030860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	77
AccII	CGCG	2 cut(s)	204, 681
AciI	CCGC	5 cut(s)	204, 207, 349, 643, 681
AfaI	GTAC	1 cut(s)	540
AfiI	CCNNNNNNNGG	1 cut(s)	331
AgsI	TTSAA	5 cut(s)	146, 272, 309, 493, 632
AleI	CACNNNNGTG	1 cut(s)	75
AluBI	AGCT	7 cut(s)	15, 164, 390, 475, 577, 637, 649
AluI	AGCT	7 cut(s)	15, 164, 390, 475, 577, 637, 649
Alw26I	GTCTC	2 cut(s)	61, 605
AoxI	GGCC	1 cut(s)	322
ApeKI	GCWGC	8 cut(s)	212, 275, 346, 390, 606, 637, 640, 646
AspLEI	GCGC	1 cut(s)	563
AspS9I	GGNCC	2 cut(s)	109, 658
AsuHPI	GGTGA	1 cut(s)	164
AvaII	GGWCC	2 cut(s)	109, 658
BaeI	ACNNNNGTAYC	2 cut(s)	522, 555
BanI	GGYRCC	1 cut(s)	77
BanII	GRGCYC	1 cut(s)	381
BbvI	GCAGC	8 cut(s)	199, 287, 358, 377, 618, 624, 627, 658
BccI	CCATC	2 cut(s)	197, 684
BciVI	GTATCC	1 cut(s)	231
BclI	TGATCA	2 cut(s)	8, 517
BcoDI	GTCTC	2 cut(s)	61, 605
BfaI	CTAG	3 cut(s)	369, 384, 706
BfuI	GTATCC	1 cut(s)	231
BglI	GCCNNNNNGGC	2 cut(s)	86, 603
Bme18I	GGWCC	2 cut(s)	109, 658
BmgT120I	GGNCC	2 cut(s)	109, 658
BmiI	GGNNCC	2 cut(s)	79, 596
BmsI	GCATC	2 cut(s)	145, 392
Bpu10I	CCTNAGC	1 cut(s)	394
BpuEI	CTTGAG	1 cut(s)	524
BsaBI	GATNNNNATC	1 cut(s)	516
BsaJI	CCNNGG	3 cut(s)	84, 112, 444
Bsc4I	CCNNNNNNNGG	1 cut(s)	331
Bse1I	ACTGG	1 cut(s)	182
Bse8I	GATNNNNATC	1 cut(s)	516
BseDI	CCNNGG	3 cut(s)	84, 112, 444
BseGI	GGATG	3 cut(s)	379, 454, 695
BseJI	GATNNNNATC	1 cut(s)	516
BseLI	CCNNNNNNNGG	1 cut(s)	331
BseMII	CTCAG	1 cut(s)	408
BseNI	ACTGG	1 cut(s)	182
BseXI	GCAGC	8 cut(s)	199, 287, 358, 377, 618, 624, 627, 658
BseYI	CCCAGC	1 cut(s)	215
Bsh1236I	CGCG	2 cut(s)	204, 681
Bsh1285I	CGRYCG	1 cut(s)	52
BshFI	GGCC	1 cut(s)	324
BshNI	GGYRCC	1 cut(s)	77
BsiEI	CGRYCG	1 cut(s)	52
BslI	CCNNNNNNNGG	1 cut(s)	331
BsmAI	GTCTC	2 cut(s)	61, 605
BsmI	GAATGC	1 cut(s)	60
BsnI	GGCC	1 cut(s)	324
Bsp1286I	GDGCHC	1 cut(s)	381
Bsp143I	GATC	2 cut(s)	8, 517
Bsp19I	CCATGG	2 cut(s)	84, 112
BspACI	CCGC	5 cut(s)	204, 207, 349, 643, 681
BspANI	GGCC	1 cut(s)	324
BspCNI	CTCAG	1 cut(s)	407
BspFNI	CGCG	2 cut(s)	204, 681
BspHI	TCATGA	1 cut(s)	229
BspLI	GGNNCC	2 cut(s)	79, 596
BspT107I	GGYRCC	1 cut(s)	77
BsrI	ACTGG	1 cut(s)	182
BssECI	CCNNGG	3 cut(s)	84, 112, 444
BssMI	GATC	2 cut(s)	8, 517
BssT1I	CCWWGG	2 cut(s)	84, 112
Bst4CI	ACNGT	3 cut(s)	104, 302, 470
Bst6I	CTCTTC	2 cut(s)	468, 633
BstC8I	GCNNGC	3 cut(s)	162, 407, 436
BstDEI	CTNAG	2 cut(s)	132, 394
BstDSI	CCRYGG	3 cut(s)	84, 112, 444
BstF5I	GGATG	3 cut(s)	379, 454, 695
BstFNI	CGCG	2 cut(s)	204, 681
BstHHI	GCGC	1 cut(s)	563
BstKTI	GATC	2 cut(s)	11, 520
BstMAI	GTCTC	2 cut(s)	61, 605
BstMBI	GATC	2 cut(s)	8, 517
BstMCI	CGRYCG	1 cut(s)	52
BstMWI	GCNNNNNNNGC	4 cut(s)	86, 603, 643, 646
BstUI	CGCG	2 cut(s)	204, 681
BstV1I	GCAGC	8 cut(s)	199, 287, 358, 377, 618, 624, 627, 658
BsuI	GTATCC	1 cut(s)	231
BsuRI	GGCC	1 cut(s)	324
BtgI	CCRYGG	3 cut(s)	84, 112, 444
BtsCI	GGATG	3 cut(s)	379, 454, 695
BtsI	GCAGTG	1 cut(s)	241
BtsIMutI	CAGTG	4 cut(s)	175, 241, 307, 675
Cac8I	GCNNGC	3 cut(s)	162, 407, 436
CciI	TCATGA	1 cut(s)	229
CfoI	GCGC	1 cut(s)	563
Cfr13I	GGNCC	2 cut(s)	109, 658
Csp6I	GTAC	1 cut(s)	539
CviAII	CATG	4 cut(s)	85, 113, 230, 353
CviQI	GTAC	1 cut(s)	539
DdeI	CTNAG	2 cut(s)	132, 394
DpnI	GATC	2 cut(s)	10, 519
DpnII	GATC	2 cut(s)	8, 517
Eam1104I	CTCTTC	2 cut(s)	468, 633
EarI	CTCTTC	2 cut(s)	468, 633
Eco130I	CCWWGG	2 cut(s)	84, 112
Eco24I	GRGCYC	1 cut(s)	381
Eco32I	GATATC	1 cut(s)	459
Eco47I	GGWCC	2 cut(s)	109, 658
EcoRV	GATATC	1 cut(s)	459
EcoT14I	CCWWGG	2 cut(s)	84, 112
EcoT38I	GRGCYC	1 cut(s)	381
ErhI	CCWWGG	2 cut(s)	84, 112
FaeI	CATG	4 cut(s)	88, 116, 233, 356
FaiI	YATR	4 cut(s)	86, 114, 231, 354
FatI	CATG	4 cut(s)	84, 112, 229, 352
FauI	CCCGC	1 cut(s)	200
FbaI	TGATCA	2 cut(s)	8, 517
FokI	GGATG	3 cut(s)	386, 461, 702
FriOI	GRGCYC	1 cut(s)	381
FspBI	CTAG	3 cut(s)	369, 384, 706
GlaI	GCGC	1 cut(s)	562
GsaI	CCCAGC	1 cut(s)	219
HaeIII	GGCC	1 cut(s)	324
HhaI	GCGC	1 cut(s)	563
Hin1II	CATG	4 cut(s)	88, 116, 233, 356
Hin6I	GCGC	1 cut(s)	561
HinP1I	GCGC	1 cut(s)	561
HinfI	GANTC	4 cut(s)	45, 220, 305, 440
HphI	GGTGA	1 cut(s)	164
Hpy166II	GTNNAC	1 cut(s)	703
Hpy188I	TCNGA	2 cut(s)	66, 689
Hpy188III	TCNNGA	4 cut(s)	230, 291, 428, 632
Hpy8I	GTNNAC	1 cut(s)	703
HpyAV	CCTTC	1 cut(s)	596
HpyCH4III	ACNGT	3 cut(s)	104, 302, 470
HpyCH4IV	ACGT	1 cut(s)	537
HpyCH4V	TGCA	2 cut(s)	160, 405
HpyF10VI	GCNNNNNNNGC	4 cut(s)	86, 603, 643, 646
HpyF3I	CTNAG	2 cut(s)	132, 394
HpySE526I	ACGT	1 cut(s)	537
Hsp92II	CATG	4 cut(s)	88, 116, 233, 356
HspAI	GCGC	1 cut(s)	561
Ksp22I	TGATCA	2 cut(s)	8, 517
Kzo9I	GATC	2 cut(s)	8, 517
LmnI	GCTCC	1 cut(s)	594
LpnPI	CCDG	9 cut(s)	18, 163, 201, 316, 326, 381, 391, 439, 600
Lsp1109I	GCAGC	8 cut(s)	199, 287, 358, 377, 618, 624, 627, 658
LweI	GCATC	2 cut(s)	145, 392
MaeI	CTAG	3 cut(s)	369, 384, 706
MaeII	ACGT	1 cut(s)	537
MaeIII	GTNAC	1 cut(s)	116
MalI	GATC	2 cut(s)	10, 519
MboI	GATC	2 cut(s)	8, 517
MboII	GAAGA	3 cut(s)	134, 455, 620
MhlI	GDGCHC	1 cut(s)	381
MlyI	GAGTC	1 cut(s)	39
MnlI	CCTC	7 cut(s)	68, 91, 100, 335, 391, 424, 576
MslI	CAYNNNNRTG	1 cut(s)	75
MspA1I	CMGCKG	1 cut(s)	349
Mva1269I	GAATGC	1 cut(s)	60
MvnI	CGCG	2 cut(s)	204, 681
MwoI	GCNNNNNNNGC	4 cut(s)	86, 603, 643, 646
NcoI	CCATGG	2 cut(s)	84, 112
NdeII	GATC	2 cut(s)	8, 517
NlaIII	CATG	4 cut(s)	88, 116, 233, 356
NlaIV	GGNNCC	2 cut(s)	79, 596
NmuCI	GTSAC	1 cut(s)	116
OliI	CACNNNNGTG	1 cut(s)	75
PagI	TCATGA	1 cut(s)	229
PctI	GAATGC	1 cut(s)	60
PfeI	GAWTC	3 cut(s)	220, 305, 440
PleI	GAGTC	1 cut(s)	39
PpsI	GAGTC	1 cut(s)	39
PspFI	CCCAGC	1 cut(s)	215
PspN4I	GGNNCC	2 cut(s)	79, 596
PspPI	GGNCC	2 cut(s)	109, 658
RsaI	GTAC	1 cut(s)	540
RsaNI	GTAC	1 cut(s)	539
RseI	CAYNNNNRTG	1 cut(s)	75
Sau3AI	GATC	2 cut(s)	8, 517
Sau96I	GGNCC	2 cut(s)	109, 658
SchI	GAGTC	1 cut(s)	39
SduI	GDGCHC	1 cut(s)	381
SfaNI	GCATC	2 cut(s)	145, 392
SinI	GGWCC	2 cut(s)	109, 658
SmiMI	CAYNNNNRTG	1 cut(s)	75
SmlI	CTYRAG	1 cut(s)	503
SmoI	CTYRAG	1 cut(s)	503
SsiI	CCGC	5 cut(s)	204, 207, 349, 643, 681
SspMI	CTAG	3 cut(s)	369, 384, 706
StyI	CCWWGG	2 cut(s)	84, 112
TaaI	ACNGT	3 cut(s)	104, 302, 470
TaiI	ACGT	1 cut(s)	540
TaqI	TCGA	1 cut(s)	48
TaqII	GACCGA	1 cut(s)	66
TauI	GCSGC	4 cut(s)	207, 352, 646, 684
TfiI	GAWTC	3 cut(s)	220, 305, 440
TscAI	CASTG	4 cut(s)	182, 248, 307, 675
TseFI	GTSAC	1 cut(s)	116
TseI	GCWGC	8 cut(s)	212, 275, 346, 390, 606, 637, 640, 646
Tsp45I	GTSAC	1 cut(s)	116
TspDTI	ATGAA	2 cut(s)	140, 246
TspGWI	ACGGA	2 cut(s)	87, 433
TspRI	CASTG	4 cut(s)	182, 248, 307, 675
VpaK11BI	GGWCC	2 cut(s)	109, 658
XspI	CTAG	3 cut(s)	369, 384, 706

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.