Rh6CG368300

metal-nicotianamine transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0001164
Physical Location & Seq
Forward (+)
55579650 .. 55580069
420 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG368300.1

Sequence Viewer

Length: 420 bp
ATGTTCCACCAACTAAAATGGTATCACGTTGCGATAGCTTACATCATCGCTCTGGTTCTAGCCTTCTGTAATGCCTATGGTTGCGGCCTCACAGATTGGTCTCTTGCTTCCAACCACGGCAAAATCGCAATTCTCATCTTCAGTGCTTGGCTTGGCCGTGAAAAAGGTGGAGTCATTGCTGGCCTTGCTTCCTTTGGTGTAATGATGAGCATTGTCTCAACAGCCTCGGATCTCATGCAAGACTTCAAGACCGGATACCTAACTCTCTCTTCTCCTCGATCCATGTTCGTTAGCCAAGTTTTCGGGACAGCCATGGGGTGTCAGGTGTGTCATGTGACCTTTGATATTCTAGCTGGTTCTTCTACAAAGCTTACTGAGTTGGTGATCCAACAGGCTCATATCCAGCACCCTATGGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0008150 GO:0016020 GO:0022857 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
OPT

Protein Analysis

139

Amino Acids

15.06

Weight (kDa)

7.74

Isoelectric Point (pI)

27.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
OPT PF03169 1 - 137 1.5e-34 OPT oligopeptide transporter protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 84
AclWI GGATC 3 cut(s) 237, 273, 379
AcoI YGGCCR 1 cut(s) 154
AcuI CTGAAG 1 cut(s) 124
AgsI TTSAA 1 cut(s) 247
AluBI AGCT 3 cut(s) 38, 353, 370
AluI AGCT 3 cut(s) 38, 353, 370
Alw26I GTCTC 2 cut(s) 105, 220
AlwI GGATC 3 cut(s) 237, 273, 379
AoxI GGCC 4 cut(s) 85, 154, 181, 414
AsuHPI GGTGA 1 cut(s) 394
BceAI ACGGC 2 cut(s) 133, 141
BciVI GTATCC 1 cut(s) 248
BcoDI GTCTC 2 cut(s) 105, 220
BfaI CTAG 2 cut(s) 59, 350
BfuI GTATCC 1 cut(s) 248
BisI GCNGC 1 cut(s) 85
BlsI GCNGC 1 cut(s) 86
BsaI GGTCTC 1 cut(s) 105
BsaJI CCNNGG 3 cut(s) 115, 225, 312
BsaWI WCCGGW 1 cut(s) 251
Bse3DI GCAATG 1 cut(s) 174
BseDI CCNNGG 3 cut(s) 115, 225, 312
BseMI GCAATG 1 cut(s) 174
BseMII CTCAG 1 cut(s) 366
BseRI GAGGAG 1 cut(s) 264
BshFI GGCC 4 cut(s) 87, 156, 183, 416
BsiSI CCGG 1 cut(s) 252
BslFI GGGAC 1 cut(s) 319
BsmAI GTCTC 2 cut(s) 105, 220
BsmFI GGGAC 1 cut(s) 319
BsnI GGCC 4 cut(s) 87, 156, 183, 416
Bso31I GGTCTC 1 cut(s) 105
Bsp143I GATC 3 cut(s) 229, 278, 384
Bsp19I CCATGG 1 cut(s) 312
BspACI CCGC 1 cut(s) 84
BspANI GGCC 4 cut(s) 87, 156, 183, 416
BspCNI CTCAG 1 cut(s) 367
BspPI GGATC 3 cut(s) 237, 273, 379
BspTNI GGTCTC 1 cut(s) 105
BsrDI GCAATG 1 cut(s) 174
BssECI CCNNGG 3 cut(s) 115, 225, 312
BssMI GATC 3 cut(s) 229, 278, 384
BssT1I CCWWGG 1 cut(s) 312
Bst6I CTCTTC 1 cut(s) 274
BstC8I GCNNGC 1 cut(s) 181
BstDEI CTNAG 1 cut(s) 375
BstDSI CCRYGG 2 cut(s) 115, 312
BstKTI GATC 3 cut(s) 232, 281, 387
BstMAI GTCTC 2 cut(s) 105, 220
BstMBI GATC 3 cut(s) 229, 278, 384
BstMWI GCNNNNNNNGC 1 cut(s) 185
BstX2I RGATCY 1 cut(s) 229
BstYI RGATCY 1 cut(s) 229
BsuI GTATCC 1 cut(s) 248
BsuRI GGCC 4 cut(s) 87, 156, 183, 416
BtgI CCRYGG 2 cut(s) 115, 312
BtgZI GCGATG 1 cut(s) 31
BtsIMutI CAGTG 1 cut(s) 148
Cac8I GCNNGC 1 cut(s) 181
CviAII CATG 4 cut(s) 235, 283, 313, 332
DdeI CTNAG 1 cut(s) 375
DpnI GATC 3 cut(s) 231, 280, 386
DpnII GATC 3 cut(s) 229, 278, 384
EaeI YGGCCR 1 cut(s) 154
Eam1104I CTCTTC 1 cut(s) 274
EarI CTCTTC 1 cut(s) 274
Eco130I CCWWGG 1 cut(s) 312
Eco31I GGTCTC 1 cut(s) 105
Eco57I CTGAAG 1 cut(s) 124
EcoT14I CCWWGG 1 cut(s) 312
ErhI CCWWGG 1 cut(s) 312
FaeI CATG 4 cut(s) 238, 286, 316, 335
FaiI YATR 7 cut(s) 78, 236, 284, 314, 333, 399, 413
FaqI GGGAC 1 cut(s) 319
FatI CATG 4 cut(s) 234, 282, 312, 331
Fnu4HI GCNGC 1 cut(s) 85
Fsp4HI GCNGC 1 cut(s) 85
FspBI CTAG 2 cut(s) 59, 350
GluI GCNGC 1 cut(s) 85
HaeIII GGCC 4 cut(s) 87, 156, 183, 416
HapII CCGG 1 cut(s) 252
Hin1II CATG 4 cut(s) 238, 286, 316, 335
HindIII AAGCTT 1 cut(s) 368
HinfI GANTC 1 cut(s) 171
HpaII CCGG 1 cut(s) 252
HphI GGTGA 1 cut(s) 394
Hpy188I TCNGA 1 cut(s) 229
Hpy188III TCNNGA 2 cut(s) 247, 304
HpyAV CCTTC 1 cut(s) 73
HpyCH4IV ACGT 1 cut(s) 27
HpyCH4V TGCA 1 cut(s) 238
HpyF10VI GCNNNNNNNGC 1 cut(s) 185
HpyF3I CTNAG 1 cut(s) 375
HpySE526I ACGT 1 cut(s) 27
Hsp92II CATG 4 cut(s) 238, 286, 316, 335
Kzo9I GATC 3 cut(s) 229, 278, 384
LpnPI CCDG 7 cut(s) 38, 165, 265, 308, 339, 377, 416
MaeI CTAG 2 cut(s) 59, 350
MaeII ACGT 1 cut(s) 27
MaeIII GTNAC 1 cut(s) 334
MalI GATC 3 cut(s) 231, 280, 386
MboI GATC 3 cut(s) 229, 278, 384
MboII GAAGA 3 cut(s) 130, 261, 351
MflI RGATCY 1 cut(s) 229
MluCI AATT 1 cut(s) 129
MlyI GAGTC 1 cut(s) 180
MmeI TCCRAC 2 cut(s) 135, 412
MnlI CCTC 3 cut(s) 98, 235, 285
MspI CCGG 1 cut(s) 252
MwoI GCNNNNNNNGC 1 cut(s) 185
NcoI CCATGG 1 cut(s) 312
NdeII GATC 3 cut(s) 229, 278, 384
NlaIII CATG 4 cut(s) 238, 286, 316, 335
NmuCI GTSAC 1 cut(s) 334
PkrI GCNGC 1 cut(s) 86
PleI GAGTC 1 cut(s) 179
PpsI GAGTC 1 cut(s) 179
PsuI RGATCY 1 cut(s) 229
SatI GCNGC 1 cut(s) 85
Sau3AI GATC 3 cut(s) 229, 278, 384
SchI GAGTC 1 cut(s) 180
SetI ASST 8 cut(s) 30, 40, 169, 261, 327, 341, 355, 372
Sse9I AATT 1 cut(s) 129
SsiI CCGC 1 cut(s) 84
SspMI CTAG 2 cut(s) 59, 350
StyI CCWWGG 1 cut(s) 312
TaiI ACGT 1 cut(s) 30
TaqI TCGA 1 cut(s) 277
TasI AATT 1 cut(s) 129
TauI GCSGC 1 cut(s) 87
TscAI CASTG 1 cut(s) 148
TseFI GTSAC 1 cut(s) 334
Tsp45I GTSAC 1 cut(s) 334
TspRI CASTG 1 cut(s) 148
XspI CTAG 2 cut(s) 59, 350
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.