Rorug05G0119100

metal-nicotianamine transporter

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Forward (+)
10502873 .. 10503602
730 bp
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UTR
Exon/CDS
Intron
Rorug05G0119100.1

Sequence Viewer

Length: 396 bp
ATGGAGAAGAAAATGATGACTTTCGCTGGGCTGGTGATTATGGTCGTCGTCCTCAATGCATGTCCTGCAATTGGAGGGTGCGACGCAGAATTAGTGAAGTTGTTGCCCTGTGCCACGTTCGTTATGGGCCCTGCCGTAGGGAAGGCCCCTCCTGAGTGCTGTGAAGGTGTAAAAAATGTGCTTCATGGAGCTGATACTAATGAGAAGCGCAGGAGTCTTTGCCAATGTTTGAAAGACACAGCTGTTGGTGCTGAAGTTAAAATCACCCCTGAAAAACTTAAGAACGTTACTGACCCATGTGGCGTCGAAGTTCCTATTCCTGGGATCATTAGTTTCGACTGCAACACAATTCCGGTGTTTGAAAGGGATCAAATAGAACTTGGAGAAGAATATTAG
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

131

Amino Acids

14.02

Weight (kDa)

4.88

Isoelectric Point (pI)

38.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LTP_2 PF14368 19 - 105 4.9e-08 Probable lipid transfer
Tryp_alpha_amyl PF00234 27 - 114 2.9e-10 Protease inhibitor/seed storage/LTP family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 285
AclWI GGATC 2 cut(s) 332, 375
AcuI CTGAAG 1 cut(s) 273
AcyI GRCGYC 1 cut(s) 303
AfiI CCNNNNNNNGG 3 cut(s) 71, 137, 320
AflII CTTAAG 1 cut(s) 278
AgsI TTSAA 2 cut(s) 232, 362
AjnI CCWGG 1 cut(s) 319
AluBI AGCT 2 cut(s) 191, 242
AluI AGCT 2 cut(s) 191, 242
AlwI GGATC 2 cut(s) 332, 375
AoxI GGCC 2 cut(s) 127, 144
ApaI GGGCCC 1 cut(s) 131
AspLEI GCGC 1 cut(s) 210
AspS9I GGNCC 3 cut(s) 127, 128, 145
AsuHPI GGTGA 2 cut(s) 46, 256
BaeGI GKGCMC 1 cut(s) 131
BanII GRGCYC 1 cut(s) 131
BceAI ACGGC 1 cut(s) 119
BciT130I CCWGG 1 cut(s) 321
BfrI CTTAAG 1 cut(s) 278
Bme1390I CCNGG 1 cut(s) 321
BmgT120I GGNCC 3 cut(s) 127, 128, 145
BmiI GGNNCC 2 cut(s) 129, 147
BmrFI CCNGG 1 cut(s) 321
BsaHI GRCGYC 1 cut(s) 303
BsaJI CCNNGG 1 cut(s) 320
BsaWI WCCGGW 1 cut(s) 352
Bsc4I CCNNNNNNNGG 3 cut(s) 71, 137, 320
BseBI CCWGG 1 cut(s) 321
BseDI CCNNGG 1 cut(s) 320
BseLI CCNNNNNNNGG 3 cut(s) 71, 137, 320
BseMII CTCAG 1 cut(s) 144
BseSI GKGCMC 1 cut(s) 131
BseYI CCCAGC 1 cut(s) 26
BshFI GGCC 2 cut(s) 129, 146
BsiSI CCGG 1 cut(s) 353
BslI CCNNNNNNNGG 3 cut(s) 71, 137, 320
BsnI GGCC 2 cut(s) 129, 146
Bsp120I GGGCCC 1 cut(s) 127
Bsp1286I GDGCHC 1 cut(s) 131
Bsp143I GATC 2 cut(s) 324, 367
BspANI GGCC 2 cut(s) 129, 146
BspCNI CTCAG 1 cut(s) 145
BspLI GGNNCC 2 cut(s) 129, 147
BspPI GGATC 2 cut(s) 332, 375
BspTI CTTAAG 1 cut(s) 278
BssECI CCNNGG 1 cut(s) 320
BssMI GATC 2 cut(s) 324, 367
BssNI GRCGYC 1 cut(s) 303
Bst2UI CCWGG 1 cut(s) 321
BstACI GRCGYC 1 cut(s) 303
BstAFI CTTAAG 1 cut(s) 278
BstAPI GCANNNNNTGC 1 cut(s) 65
BstDEI CTNAG 1 cut(s) 153
BstENI CCTNNNNNAGG 1 cut(s) 135
BstHHI GCGC 1 cut(s) 210
BstKTI GATC 2 cut(s) 327, 370
BstMBI GATC 2 cut(s) 324, 367
BstMWI GCNNNNNNNGC 2 cut(s) 65, 248
BstNI CCWGG 1 cut(s) 321
BstNSI RCATGY 1 cut(s) 63
BstSCI CCNGG 1 cut(s) 319
BstSLI GKGCMC 1 cut(s) 131
BsuRI GGCC 2 cut(s) 129, 146
CfoI GCGC 1 cut(s) 210
Cfr13I GGNCC 3 cut(s) 127, 128, 145
CseI GACGC 2 cut(s) 92, 292
CviAII CATG 3 cut(s) 60, 185, 297
CviJI RGCY 5 cut(s) 31, 129, 146, 191, 242
CviKI_1 RGCY 5 cut(s) 31, 129, 146, 191, 242
DdeI CTNAG 1 cut(s) 153
DpnI GATC 2 cut(s) 326, 369
DpnII GATC 2 cut(s) 324, 367
Eco24I GRGCYC 1 cut(s) 131
Eco57I CTGAAG 1 cut(s) 273
EcoNI CCTNNNNNAGG 1 cut(s) 135
EcoO109I RGGNCCY 2 cut(s) 128, 145
EcoRII CCWGG 1 cut(s) 319
EcoT22I ATGCAT 1 cut(s) 61
EcoT38I GRGCYC 1 cut(s) 131
FaeI CATG 3 cut(s) 63, 188, 300
FaiI YATR 5 cut(s) 41, 61, 125, 186, 298
FatI CATG 3 cut(s) 59, 184, 296
FriOI GRGCYC 1 cut(s) 131
GlaI GCGC 1 cut(s) 209
GsaI CCCAGC 1 cut(s) 30
HaeIII GGCC 2 cut(s) 129, 146
HapII CCGG 1 cut(s) 353
HgaI GACGC 2 cut(s) 92, 292
HhaI GCGC 1 cut(s) 210
Hin1I GRCGYC 1 cut(s) 303
Hin1II CATG 3 cut(s) 63, 188, 300
Hin6I GCGC 1 cut(s) 208
HinP1I GCGC 1 cut(s) 208
HinfI GANTC 1 cut(s) 214
HpaII CCGG 1 cut(s) 353
HphI GGTGA 2 cut(s) 46, 256
Hpy188III TCNNGA 1 cut(s) 152
Hpy99I CGWCG 3 cut(s) 50, 86, 308
HpyAV CCTTC 2 cut(s) 136, 158
HpyCH4IV ACGT 2 cut(s) 116, 285
HpyCH4V TGCA 3 cut(s) 59, 68, 342
HpyF10VI GCNNNNNNNGC 2 cut(s) 65, 248
HpyF3I CTNAG 1 cut(s) 153
HpySE526I ACGT 2 cut(s) 116, 285
Hsp92I GRCGYC 1 cut(s) 303
Hsp92II CATG 3 cut(s) 63, 188, 300
HspAI GCGC 1 cut(s) 208
Kzo9I GATC 2 cut(s) 324, 367
LmnI GCTCC 1 cut(s) 188
MaeII ACGT 2 cut(s) 116, 285
MaeIII GTNAC 1 cut(s) 286
MalI GATC 2 cut(s) 326, 369
MboI GATC 2 cut(s) 324, 367
MboII GAAGA 1 cut(s) 19
MfeI CAATTG 1 cut(s) 69
MhlI GDGCHC 1 cut(s) 131
MluCI AATT 3 cut(s) 69, 89, 348
MlyI GAGTC 1 cut(s) 223
MnlI CCTC 3 cut(s) 62, 68, 159
Mph1103I ATGCAT 1 cut(s) 61
MseI TTAA 2 cut(s) 258, 279
MspA1I CMGCKG 1 cut(s) 242
MspCI CTTAAG 1 cut(s) 278
MspI CCGG 1 cut(s) 353
MspR9I CCNGG 1 cut(s) 321
MunI CAATTG 1 cut(s) 69
MvaI CCWGG 1 cut(s) 321
MwoI GCNNNNNNNGC 2 cut(s) 65, 248
NdeII GATC 2 cut(s) 324, 367
NlaIII CATG 3 cut(s) 63, 188, 300
NlaIV GGNNCC 2 cut(s) 129, 147
NsiI ATGCAT 1 cut(s) 61
NspI RCATGY 1 cut(s) 63
PleI GAGTC 1 cut(s) 222
PpsI GAGTC 1 cut(s) 222
Psp1406I AACGTT 1 cut(s) 285
Psp6I CCWGG 1 cut(s) 319
PspFI CCCAGC 1 cut(s) 26
PspGI CCWGG 1 cut(s) 319
PspN4I GGNNCC 2 cut(s) 129, 147
PspOMI GGGCCC 1 cut(s) 127
PspPI GGNCC 3 cut(s) 127, 128, 145
PvuII CAGCTG 1 cut(s) 242
SaqAI TTAA 2 cut(s) 258, 279
Sau3AI GATC 2 cut(s) 324, 367
Sau96I GGNCC 3 cut(s) 127, 128, 145
SchI GAGTC 1 cut(s) 223
ScrFI CCNGG 1 cut(s) 321
SduI GDGCHC 1 cut(s) 131
SetI ASST 5 cut(s) 119, 169, 193, 244, 288
SmlI CTYRAG 1 cut(s) 278
SmoI CTYRAG 1 cut(s) 278
Sse9I AATT 3 cut(s) 69, 89, 348
SspI AATATT 1 cut(s) 392
StyD4I CCNGG 1 cut(s) 319
TaiI ACGT 2 cut(s) 119, 288
TaqI TCGA 2 cut(s) 306, 336
TasI AATT 3 cut(s) 69, 89, 348
Tru1I TTAA 2 cut(s) 258, 279
Tru9I TTAA 2 cut(s) 258, 279
TspDTI ATGAA 1 cut(s) 173
Vha464I CTTAAG 1 cut(s) 278
XagI CCTNNNNNAGG 1 cut(s) 135
XceI RCATGY 1 cut(s) 63
XcmI CCANNNNNNNNNTGG 1 cut(s) 121
Zsp2I ATGCAT 1 cut(s) 61
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.