Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001164

Physical Location & Seq

Genomic Coordinates Forward (+)

56565718 .. 56566584

Gene Structure 867 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ26397

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGTTCCACCAACTAAAATGGTATCACGTTGCGATAGCTTACATCATCGCTCTGGTTCTAGCCTTCTGTAATGCCTATGGTTGCGGCCTCACAGATTGGTCTCTTGCTTCCAACCACGGCAAAATCGCAATTCTCATCTTCAGTGCTTGGCTTGGCCGTGAAAAAGGTGGAGTCATTGCTGGCCTTGCTTCCTTTGGTGTAATGATGAGCATTGTCTCAACAGCCTCGGATCTCATGCAAGACTTCAAGACCGGATACCTAACTCTCTCTTCTCCTCGATCCATGTTCGTTAGCCAAGTTTTCGGGACAGCCATGGGGTGCTCATATCCTGCACCCTATGGCCTAATGTACCGCGGTATTGCACTCCTCGGAGTTGAGGGCATCGGCTCACTCCCCAAACACTGCGCCACGCTTGCAGTCTCATTTTTTGCATTTGCCATTGCCATTAACATAGTAACTGAGATTTTGAAGCGTTACGAGACCAAGTACAAGATCTACAGATTTGTTCCGAACGCAATGGCCATGGCAGTCCCGTTCTATATCGGCTCCTACTTCATGATTGACGATTTAGCACCGGCGGTTGCGTCTGGTCTCATCTGTGGTGAGTCTATGTGGGGTGTTCCAGCGGCGATCCTATCTCTTGCCAATGTCAAAGCACCGATATGCATGAAGTTCCTCTCCTACTCGGACAACGATGGAGTTGATTCATTTTTATCTTCATCAGGATCTAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0008150 GO:0016020 GO:0022857 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

OPT

Protein Analysis

244

Amino Acids

26.32

Weight (kDa)

8.47

Isoelectric Point (pI)

32.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
OPT	PF03169	1 - 107	2.3e-31	OPT oligopeptide transporter protein
OPT	PF03169	109 - 188	1.4e-06	OPT oligopeptide transporter protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001164)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65730
fragaria_vesca	FvH4_1g25380 FvH4_4g36810
malus_domestica	MD13G1006700.v1.1 MD16G1001100.v1.1
prunus_persica	Prupe.1G346200_v2.0.a1 Prupe.1G346200_v2.0.a1
pyrus_communis	pycom13g00560 pycom16g00430
rosa_chinensis	RchiOBHm_Chr2g0123411 RchiOBHm_Chr4g0446541 RchiOBHm_Chr5g0030651 RchiOBHm_Chr5g0030671 RchiOBHm_Chr6g0294131
rosa_laevigata	RLG00000005650 RLG00000011896 RLG00000018750 RLG00000018751 RLG00000033236 RLG00000033243
rosa_multiflora	Rmu_co8173216.1_g000001 Rmu_sc0002840.1_g000001 Rmu_sc0003238.1_g000020 Rmu_sc0005037.1_g000008 Rmu_sc0005876.1_g000010 Rmu_sc0008328.1_g000001 Rmu_sc0022360.1_g000001 Rmu_ssc0000144.1_g000011 Rmu_ssc0000144.1_g000013
rosa_roxburghii	Rroxscaffold_1G00049650 Rroxscaffold_5G00386960 Rroxscaffold_7G00173620
rosa_rugosa	Rorug04G0372300 Rorug05G0119100 Rorug06G0241800
rosa_samantha	Rh2AG304200 Rh2BG312200 Rh2CG290700 Rh2DG328200 Rh4AG434000 Rh4BG443200 Rh4CG460500 Rh4DG441800 Rh5AG211400 Rh5AG211600 Rh5BG210500 Rh5CG234100 Rh5DG215400 Rh5DG215700 Rh6BG361000 Rh6CG368300 Rh6DG354900
rosa_wichuraiana	Rw2G024350 Rw4G037100 Rw5G019350 Rw5G019390 Rw6G030860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	354
AciI	CCGC	5 cut(s)	84, 352, 354, 578, 626
AclWI	GGATC	4 cut(s)	237, 273, 625, 733
AcoI	YGGCCR	2 cut(s)	154, 519
AcuI	CTGAAG	1 cut(s)	124
AfaI	GTAC	2 cut(s)	350, 488
AgsI	TTSAA	2 cut(s)	247, 469
AluBI	AGCT	1 cut(s)	38
AluI	AGCT	1 cut(s)	38
Alw21I	GWGCWC	1 cut(s)	323
Alw26I	GTCTC	5 cut(s)	105, 220, 424, 473, 596
AlwI	GGATC	4 cut(s)	237, 273, 625, 733
AoxI	GGCC	5 cut(s)	85, 154, 181, 340, 519
AspLEI	GCGC	1 cut(s)	407
AsuHPI	GGTGA	1 cut(s)	614
BalI	TGGCCA	1 cut(s)	521
Bbv12I	GWGCWC	1 cut(s)	323
BccI	CCATC	1 cut(s)	689
BceAI	ACGGC	2 cut(s)	133, 141
BciVI	GTATCC	1 cut(s)	248
BcoDI	GTCTC	5 cut(s)	105, 220, 424, 473, 596
BfaI	CTAG	2 cut(s)	59, 729
BfmI	CTRYAG	1 cut(s)	496
BfuI	GTATCC	1 cut(s)	248
BglII	AGATCT	1 cut(s)	492
BisI	GCNGC	2 cut(s)	85, 627
BlsI	GCNGC	2 cut(s)	86, 628
BmiI	GGNNCC	1 cut(s)	547
BmsI	GCATC	1 cut(s)	390
BsaI	GGTCTC	3 cut(s)	105, 473, 596
BsaJI	CCNNGG	6 cut(s)	115, 225, 312, 352, 367, 522
BsaWI	WCCGGW	1 cut(s)	251
Bse118I	RCCGGY	1 cut(s)	574
Bse3DI	GCAATG	3 cut(s)	174, 438, 522
BseDI	CCNNGG	6 cut(s)	115, 225, 312, 352, 367, 522
BseMI	GCAATG	3 cut(s)	174, 438, 522
BseMII	CTCAG	1 cut(s)	450
BseRI	GAGGAG	2 cut(s)	264, 356
BsgI	GTGCAG	1 cut(s)	315
Bsh1236I	CGCG	1 cut(s)	354
BshFI	GGCC	5 cut(s)	87, 156, 183, 342, 521
BsiHKAI	GWGCWC	1 cut(s)	323
BsiSI	CCGG	2 cut(s)	252, 575
BslFI	GGGAC	2 cut(s)	319, 515
BsmAI	GTCTC	5 cut(s)	105, 220, 424, 473, 596
BsmFI	GGGAC	2 cut(s)	319, 515
BsnI	GGCC	5 cut(s)	87, 156, 183, 342, 521
Bso31I	GGTCTC	3 cut(s)	105, 473, 596
Bsp1286I	GDGCHC	1 cut(s)	323
Bsp143I	GATC	5 cut(s)	229, 278, 492, 630, 725
Bsp19I	CCATGG	2 cut(s)	312, 522
BspACI	CCGC	5 cut(s)	84, 352, 354, 578, 626
BspANI	GGCC	5 cut(s)	87, 156, 183, 342, 521
BspCNI	CTCAG	1 cut(s)	451
BspFNI	CGCG	1 cut(s)	354
BspHI	TCATGA	1 cut(s)	555
BspLI	GGNNCC	1 cut(s)	547
BspPI	GGATC	4 cut(s)	237, 273, 625, 733
BspTNI	GGTCTC	3 cut(s)	105, 473, 596
BsrDI	GCAATG	3 cut(s)	174, 438, 522
BsrFI	RCCGGY	1 cut(s)	574
BssAI	RCCGGY	1 cut(s)	574
BssECI	CCNNGG	6 cut(s)	115, 225, 312, 352, 367, 522
BssMI	GATC	5 cut(s)	229, 278, 492, 630, 725
BssT1I	CCWWGG	2 cut(s)	312, 522
Bst6I	CTCTTC	1 cut(s)	274
BstC8I	GCNNGC	2 cut(s)	181, 414
BstDEI	CTNAG	1 cut(s)	459
BstDSI	CCRYGG	4 cut(s)	115, 312, 352, 522
BstFNI	CGCG	1 cut(s)	354
BstHHI	GCGC	1 cut(s)	407
BstKTI	GATC	5 cut(s)	232, 281, 495, 633, 728
BstMAI	GTCTC	5 cut(s)	105, 220, 424, 473, 596
BstMBI	GATC	5 cut(s)	229, 278, 492, 630, 725
BstMWI	GCNNNNNNNGC	2 cut(s)	185, 413
BstSFI	CTRYAG	1 cut(s)	496
BstUI	CGCG	1 cut(s)	354
BstX2I	RGATCY	3 cut(s)	229, 492, 725
BstYI	RGATCY	3 cut(s)	229, 492, 725
BsuI	GTATCC	1 cut(s)	248
BsuRI	GGCC	5 cut(s)	87, 156, 183, 342, 521
BtgI	CCRYGG	4 cut(s)	115, 312, 352, 522
BtgZI	GCGATG	1 cut(s)	31
BtsI	GCAGTG	1 cut(s)	400
BtsIMutI	CAGTG	2 cut(s)	148, 400
Cac8I	GCNNGC	2 cut(s)	181, 414
CciI	TCATGA	1 cut(s)	555
CfoI	GCGC	1 cut(s)	407
Cfr10I	RCCGGY	1 cut(s)	574
Cfr42I	CCGCGG	1 cut(s)	355
CseI	GACGC	1 cut(s)	573
Csp6I	GTAC	2 cut(s)	349, 487
CviAII	CATG	6 cut(s)	235, 283, 313, 523, 556, 667
CviQI	GTAC	2 cut(s)	349, 487
DdeI	CTNAG	1 cut(s)	459
DpnI	GATC	5 cut(s)	231, 280, 494, 632, 727
DpnII	GATC	5 cut(s)	229, 278, 492, 630, 725
EaeI	YGGCCR	2 cut(s)	154, 519
Eam1104I	CTCTTC	1 cut(s)	274
EarI	CTCTTC	1 cut(s)	274
Eco130I	CCWWGG	2 cut(s)	312, 522
Eco31I	GGTCTC	3 cut(s)	105, 473, 596
Eco57I	CTGAAG	1 cut(s)	124
EcoT14I	CCWWGG	2 cut(s)	312, 522
EcoT22I	ATGCAT	1 cut(s)	668
ErhI	CCWWGG	2 cut(s)	312, 522
FaeI	CATG	6 cut(s)	238, 286, 316, 526, 559, 670
FaqI	GGGAC	2 cut(s)	319, 515
FatI	CATG	6 cut(s)	234, 282, 312, 522, 555, 666
Fnu4HI	GCNGC	2 cut(s)	85, 627
Fsp4HI	GCNGC	2 cut(s)	85, 627
FspBI	CTAG	2 cut(s)	59, 729
GlaI	GCGC	1 cut(s)	406
GluI	GCNGC	2 cut(s)	85, 627
HaeIII	GGCC	5 cut(s)	87, 156, 183, 342, 521
HapII	CCGG	2 cut(s)	252, 575
HgaI	GACGC	1 cut(s)	573
HhaI	GCGC	1 cut(s)	407
Hin1II	CATG	6 cut(s)	238, 286, 316, 526, 559, 670
Hin6I	GCGC	1 cut(s)	405
HinP1I	GCGC	1 cut(s)	405
HinfI	GANTC	3 cut(s)	171, 605, 704
HpaII	CCGG	2 cut(s)	252, 575
HphI	GGTGA	1 cut(s)	614
Hpy188I	TCNGA	4 cut(s)	229, 371, 510, 688
Hpy188III	TCNNGA	4 cut(s)	247, 304, 556, 723
HpyAV	CCTTC	1 cut(s)	73
HpyCH4IV	ACGT	1 cut(s)	27
HpyCH4V	TGCA	6 cut(s)	238, 332, 362, 416, 431, 666
HpyF10VI	GCNNNNNNNGC	2 cut(s)	185, 413
HpyF3I	CTNAG	1 cut(s)	459
HpySE526I	ACGT	1 cut(s)	27
Hsp92II	CATG	6 cut(s)	238, 286, 316, 526, 559, 670
HspAI	GCGC	1 cut(s)	405
KspI	CCGCGG	1 cut(s)	355
Kzo9I	GATC	5 cut(s)	229, 278, 492, 630, 725
LmnI	GCTCC	1 cut(s)	551
LpnPI	CCDG	8 cut(s)	38, 165, 265, 342, 573, 588, 636, 708
LweI	GCATC	1 cut(s)	390
MaeI	CTAG	2 cut(s)	59, 729
MaeII	ACGT	1 cut(s)	27
MaeIII	GTNAC	2 cut(s)	454, 473
MalI	GATC	5 cut(s)	231, 280, 494, 632, 727
MboI	GATC	5 cut(s)	229, 278, 492, 630, 725
MboII	GAAGA	3 cut(s)	130, 261, 708
MflI	RGATCY	3 cut(s)	229, 492, 725
MhlI	GDGCHC	1 cut(s)	323
MlsI	TGGCCA	1 cut(s)	521
MluCI	AATT	1 cut(s)	129
MluNI	TGGCCA	1 cut(s)	521
MlyI	GAGTC	2 cut(s)	180, 614
MmeI	TCCRAC	1 cut(s)	135
MnlI	CCTC	6 cut(s)	98, 235, 285, 370, 377, 686
Mox20I	TGGCCA	1 cut(s)	521
Mph1103I	ATGCAT	1 cut(s)	668
MscI	TGGCCA	1 cut(s)	521
MseI	TTAA	1 cut(s)	447
MslI	CAYNNNNRTG	1 cut(s)	661
Msp20I	TGGCCA	1 cut(s)	521
MspA1I	CMGCKG	2 cut(s)	354, 626
MspI	CCGG	2 cut(s)	252, 575
MvnI	CGCG	1 cut(s)	354
MwoI	GCNNNNNNNGC	2 cut(s)	185, 413
NcoI	CCATGG	2 cut(s)	312, 522
NdeII	GATC	5 cut(s)	229, 278, 492, 630, 725
NlaIII	CATG	6 cut(s)	238, 286, 316, 526, 559, 670
NlaIV	GGNNCC	1 cut(s)	547
NsiI	ATGCAT	1 cut(s)	668
PagI	TCATGA	1 cut(s)	555
PfeI	GAWTC	1 cut(s)	704
PkrI	GCNGC	2 cut(s)	86, 628
PleI	GAGTC	2 cut(s)	179, 613
PpsI	GAGTC	2 cut(s)	179, 613
PspN4I	GGNNCC	1 cut(s)	547
PsuI	RGATCY	3 cut(s)	229, 492, 725
RsaI	GTAC	2 cut(s)	350, 488
RsaNI	GTAC	2 cut(s)	349, 487
RseI	CAYNNNNRTG	1 cut(s)	661
SacII	CCGCGG	1 cut(s)	355
SaqAI	TTAA	1 cut(s)	447
SatI	GCNGC	2 cut(s)	85, 627
Sau3AI	GATC	5 cut(s)	229, 278, 492, 630, 725
SchI	GAGTC	2 cut(s)	180, 614
SduI	GDGCHC	1 cut(s)	323
SetI	ASST	5 cut(s)	30, 40, 169, 261, 734
SfaNI	GCATC	1 cut(s)	390
SfcI	CTRYAG	1 cut(s)	496
Sfr303I	CCGCGG	1 cut(s)	355
SgrAI	CRCCGGYG	1 cut(s)	574
SgrBI	CCGCGG	1 cut(s)	355
SmiMI	CAYNNNNRTG	1 cut(s)	661
Sse9I	AATT	1 cut(s)	129
SsiI	CCGC	5 cut(s)	84, 352, 354, 578, 626
SspMI	CTAG	2 cut(s)	59, 729
StyI	CCWWGG	2 cut(s)	312, 522
TaiI	ACGT	1 cut(s)	30
TaqI	TCGA	1 cut(s)	277
TasI	AATT	1 cut(s)	129
TatI	WGTACW	1 cut(s)	486
TauI	GCSGC	2 cut(s)	87, 629
TfiI	GAWTC	1 cut(s)	704
Tru1I	TTAA	1 cut(s)	447
Tru9I	TTAA	1 cut(s)	447
TscAI	CASTG	2 cut(s)	148, 407
TspDTI	ATGAA	4 cut(s)	544, 683, 696, 708
TspRI	CASTG	2 cut(s)	148, 407
XspI	CTAG	2 cut(s)	59, 729
Zsp2I	ATGCAT	1 cut(s)	668

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.