RLG00000018750

metal-nicotianamine transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0001164
Physical Location & Seq
Forward (+)
35337979 .. 35338371
393 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000018750

Sequence Viewer

Length: 393 bp
ATGGAGACTGATGATTTCAAGAATGATCAAGCTGGAAAAAAAATGGTTCAGGCTACAGACTCGACTGAAAAGGCATTCAGAGACATAGAGGTGCCCCCATGGAACAAGCAAATAACTGTCAGGTCTATGGTCACAAGTTTTTTTCTTAGCATCATCTTCAACTTCATCGTGTGCAAGCTCAATCTTACCACTGGTGTAATACCATCTCTAAATGTCGCGGAGGGGCTGTTGGGTTTCGCCCTGCTGAAAGGATACACTGCCTTGCTTCAAAAGTTAGGTCTGTTGAAGCAGCCTTTCACTCGTCAAGAAAACACAGTGGTTCAAACCTGTGTTGTGGCGTCGTCTGGGATAGCTTTCAGCAGTGGCACACTGGCACGGCGAGTTATTTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0008150 GO:0016020 GO:0022857 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
OPT

Protein Analysis

131

Amino Acids

14.35

Weight (kDa)

9.26

Isoelectric Point (pI)

35.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
OPT PF03169 37 - 124 7.4e-18 OPT oligopeptide transporter protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 91
AccII CGCG 1 cut(s) 218
AciI CCGC 1 cut(s) 218
AcyI GRCGYC 1 cut(s) 338
AgsI TTSAA 5 cut(s) 19, 160, 269, 286, 323
AluBI AGCT 3 cut(s) 32, 178, 353
AluI AGCT 3 cut(s) 32, 178, 353
Alw26I GTCTC 1 cut(s) 75
ApeKI GCWGC 1 cut(s) 289
ArsI GACNNNNNNTTYG 2 cut(s) 262, 294
BaeGI GKGCMC 1 cut(s) 96
BanI GGYRCC 1 cut(s) 91
BbvI GCAGC 1 cut(s) 301
BccI CCATC 1 cut(s) 211
BciVI GTATCC 1 cut(s) 245
BclI TGATCA 1 cut(s) 25
BcoDI GTCTC 1 cut(s) 75
BfaI CTAG 1 cut(s) 391
BfmI CTRYAG 1 cut(s) 54
BfuI GTATCC 1 cut(s) 245
BisI GCNGC 1 cut(s) 290
BlsI GCNGC 1 cut(s) 291
BmiI GGNNCC 1 cut(s) 93
BmsI GCATC 1 cut(s) 159
BsaHI GRCGYC 1 cut(s) 338
BsaJI CCNNGG 1 cut(s) 98
BsaXI ACNNNNNCTCC 2 cut(s) 212, 242
Bse1I ACTGG 2 cut(s) 196, 375
BseDI CCNNGG 1 cut(s) 98
BseNI ACTGG 2 cut(s) 196, 375
BseSI GKGCMC 1 cut(s) 96
BseXI GCAGC 1 cut(s) 301
Bsh1236I CGCG 1 cut(s) 218
BshNI GGYRCC 1 cut(s) 91
BsmAI GTCTC 1 cut(s) 75
BsmI GAATGC 1 cut(s) 74
Bsp1286I GDGCHC 1 cut(s) 96
Bsp143I GATC 1 cut(s) 25
Bsp19I CCATGG 1 cut(s) 98
BspACI CCGC 1 cut(s) 218
BspFNI CGCG 1 cut(s) 218
BspLI GGNNCC 1 cut(s) 93
BspT107I GGYRCC 1 cut(s) 91
BsrI ACTGG 2 cut(s) 196, 375
BssECI CCNNGG 1 cut(s) 98
BssMI GATC 1 cut(s) 25
BssNI GRCGYC 1 cut(s) 338
BssT1I CCWWGG 1 cut(s) 98
Bst4CI ACNGT 2 cut(s) 118, 316
BstACI GRCGYC 1 cut(s) 338
BstC8I GCNNGC 1 cut(s) 176
BstDEI CTNAG 1 cut(s) 146
BstDSI CCRYGG 1 cut(s) 98
BstFNI CGCG 1 cut(s) 218
BstKTI GATC 1 cut(s) 28
BstMAI GTCTC 1 cut(s) 75
BstMBI GATC 1 cut(s) 25
BstSFI CTRYAG 1 cut(s) 54
BstSLI GKGCMC 1 cut(s) 96
BstUI CGCG 1 cut(s) 218
BstV1I GCAGC 1 cut(s) 301
BsuI GTATCC 1 cut(s) 245
BtgI CCRYGG 1 cut(s) 98
BtsI GCAGTG 2 cut(s) 255, 367
BtsIMutI CAGTG 5 cut(s) 189, 255, 321, 367, 368
Cac8I GCNNGC 1 cut(s) 176
CseI GACGC 1 cut(s) 327
CviAII CATG 1 cut(s) 99
CviJI RGCY 6 cut(s) 32, 53, 178, 226, 292, 353
CviKI_1 RGCY 6 cut(s) 32, 53, 178, 226, 292, 353
DdeI CTNAG 1 cut(s) 146
DpnI GATC 1 cut(s) 27
DpnII GATC 1 cut(s) 25
Eco130I CCWWGG 1 cut(s) 98
EcoT14I CCWWGG 1 cut(s) 98
ErhI CCWWGG 1 cut(s) 98
FaeI CATG 1 cut(s) 102
FaiI YATR 3 cut(s) 86, 100, 128
FatI CATG 1 cut(s) 98
FbaI TGATCA 1 cut(s) 25
Fnu4HI GCNGC 1 cut(s) 290
Fsp4HI GCNGC 1 cut(s) 290
FspBI CTAG 1 cut(s) 391
GluI GCNGC 1 cut(s) 290
HgaI GACGC 1 cut(s) 327
Hin1I GRCGYC 1 cut(s) 338
Hin1II CATG 1 cut(s) 102
HinfI GANTC 1 cut(s) 59
Hpy188I TCNGA 1 cut(s) 80
Hpy188III TCNNGA 2 cut(s) 19, 305
Hpy99I CGWCG 1 cut(s) 343
HpyCH4III ACNGT 2 cut(s) 118, 316
HpyCH4V TGCA 1 cut(s) 174
HpyF3I CTNAG 1 cut(s) 146
Hsp92I GRCGYC 1 cut(s) 338
Hsp92II CATG 1 cut(s) 102
Ksp22I TGATCA 1 cut(s) 25
Kzo9I GATC 1 cut(s) 25
LpnPI CCDG 8 cut(s) 18, 35, 106, 177, 254, 330, 340, 356
Lsp1109I GCAGC 1 cut(s) 301
LweI GCATC 1 cut(s) 159
MaeI CTAG 1 cut(s) 391
MaeIII GTNAC 1 cut(s) 130
MalI GATC 1 cut(s) 27
MboI GATC 1 cut(s) 25
MboII GAAGA 1 cut(s) 148
MhlI GDGCHC 1 cut(s) 96
MlyI GAGTC 1 cut(s) 53
MnlI CCTC 2 cut(s) 82, 214
MslI CAYNNNNRTG 1 cut(s) 89
Mva1269I GAATGC 1 cut(s) 74
MvnI CGCG 1 cut(s) 218
NcoI CCATGG 1 cut(s) 98
NdeII GATC 1 cut(s) 25
NlaIII CATG 1 cut(s) 102
NlaIV GGNNCC 1 cut(s) 93
NmuCI GTSAC 1 cut(s) 130
PctI GAATGC 1 cut(s) 74
PkrI GCNGC 1 cut(s) 291
PleI GAGTC 1 cut(s) 53
PpsI GAGTC 1 cut(s) 53
PspN4I GGNNCC 1 cut(s) 93
RseI CAYNNNNRTG 1 cut(s) 89
SatI GCNGC 1 cut(s) 290
Sau3AI GATC 1 cut(s) 25
SchI GAGTC 1 cut(s) 53
SduI GDGCHC 1 cut(s) 96
SetI ASST 7 cut(s) 34, 93, 125, 180, 280, 329, 355
SfaNI GCATC 1 cut(s) 159
SfcI CTRYAG 1 cut(s) 54
SmiMI CAYNNNNRTG 1 cut(s) 89
SsiI CCGC 1 cut(s) 218
SspMI CTAG 1 cut(s) 391
StyI CCWWGG 1 cut(s) 98
TaaI ACNGT 2 cut(s) 118, 316
TaqI TCGA 1 cut(s) 62
TscAI CASTG 5 cut(s) 196, 262, 321, 367, 375
TseFI GTSAC 1 cut(s) 130
TseI GCWGC 1 cut(s) 289
Tsp45I GTSAC 1 cut(s) 130
TspDTI ATGAA 1 cut(s) 154
TspRI CASTG 5 cut(s) 196, 262, 321, 367, 375
XspI CTAG 1 cut(s) 391
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.