RLG00000011896

metal-nicotianamine transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0001164
Physical Location & Seq
Reverse (-)
13611242 .. 13613929
2688 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000011896

Sequence Viewer

Length: 1257 bp
ATGATTTTGACAATGATCAAGCTGGAAAACAAATGGCTCAAGCTAAGAAGGACTCTGATTAAAAAGGCATTAAGAGACAAGGGAGGTGCCGCCATGGACAAAGCAAATAACTATGAGCTTAATCTTACAGCTAGTGTCATATGGTATGTCACGGCGGGGTTGTTGGGATTCGCCCTGCTGAAAGGATACACTGTCTTGCTTCAAAAGGTAGCCTTCAGCAGCGGCATGACGAGTTATTTACTATGGATAAGCCTTCTTGTAGCTGCTCAGGGAGATGCAGGCAACACTTTAATCAACATCAAGAGGCCTTCAATTCCATGGATGATGAATGGCCACCTCTTACATGGTGAACATAAGAAAGGTATCTGGTACAGTGCTCATCATGTGGTATCATGGGGAATCATGTGGTCTTTGATTGAACAAAAGAAAGGTATCTGGTACAGTGCTCATCTTTCTGCAAGTAGTCTTCATGGAATCCAAGAAGAAAAGAAAGTAGAGTTGTCATCGCCACCACCACTATCAATATCCGATATGGAAGCTGGATTGCCCTCATCAGAAATTGAGCTGAGTGAAAACTACGACGAGGAACGAAGAATTGATCGATTACTTTTTGAAAGACCAAATTCCGAGCTGGATTGCTGCTCTTACATCATCGCTCCGGTTCTAGCCTTCTGTAATGCCTATGGTTGCGGCCTCACAGATTGGTCTCTTGCTTCCAACTACGGCAAAATCGCATTTCTCATCTTCAGTGCTTGGCTTGGCCGTGAAAAAGGTGGTGTCATTGCTGGCCTTGCTTCTTGTGGTGTAATGTTGAGCATTGTCTCAACAGCCTCGGATCTCATGCAAGACTTCAAGACCAGATACCTAACTCTCTCTTCTCCTCGATCCATGTTCGTTAGCCAAGTTTTTGGGACAGCGATGGGGTGTGTCATGTCGCCTTTGATATTCTGGTTCTTCTACAAAGCTTACCGAGTTGGTGATCCAACAGGCTCATATCCTGCACCCTATGGCCTAATGTACCGCGGCATTGCACTCCTCAGAGTTCAGGGCTTCGGCTGGAAATTATGGAACAAAAAACAAGCTGAGGATTTAGCACCGGCGGTTGCGTCTGGTCTCATCTGTGGTGAGTCTAAGTGTGGTGTTCCAGCGGCGATCCTATCTCTTGCCAATGTCAAAGCACCGATATGCATGAAGTTCCTCTCTTACTCGGACAACGATAGAGTTGATTCATTTTTATCTTCATCAGGATCTAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0008150 GO:0016020 GO:0022857 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
OPT

Protein Analysis

419

Amino Acids

46.14

Weight (kDa)

8.97

Isoelectric Point (pI)

38.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
OPT PF03169 215 - 348 4e-35 OPT oligopeptide transporter protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 86
AccII CGCG 1 cut(s) 1023
AciI CCGC 8 cut(s) 90, 155, 222, 690, 1021, 1023, 1100, 1148
AclWI GGATC 5 cut(s) 843, 879, 974, 1147, 1255
AcoI YGGCCR 2 cut(s) 331, 760
AcsI RAATTY 1 cut(s) 622
AcuI CTGAAG 2 cut(s) 199, 730
AfaI GTAC 3 cut(s) 371, 440, 1019
AgsI TTSAA 5 cut(s) 203, 312, 419, 614, 853
Alw21I GWGCWC 2 cut(s) 379, 448
Alw26I GTCTC 4 cut(s) 69, 711, 826, 1118
AlwI GGATC 5 cut(s) 843, 879, 974, 1147, 1255
AoxI GGCC 6 cut(s) 305, 331, 691, 760, 787, 1009
ApeKI GCWGC 3 cut(s) 219, 263, 639
ApoI RAATTY 1 cut(s) 622
AsuHPI GGTGA 3 cut(s) 359, 989, 1136
BalI TGGCCA 1 cut(s) 333
BanI GGYRCC 1 cut(s) 86
BbsI GAAGAC 1 cut(s) 458
Bbv12I GWGCWC 2 cut(s) 379, 448
BbvCI CCTCAGC 1 cut(s) 1083
BbvI GCAGC 3 cut(s) 231, 250, 626
BccI CCATC 1 cut(s) 913
BceAI ACGGC 3 cut(s) 168, 739, 747
BciVI GTATCC 1 cut(s) 179
BclI TGATCA 1 cut(s) 15
BcoDI GTCTC 4 cut(s) 69, 711, 826, 1118
BfaI CTAG 3 cut(s) 132, 665, 1251
BfuI GTATCC 1 cut(s) 179
BisI GCNGC 8 cut(s) 90, 220, 223, 264, 640, 691, 1024, 1149
BlsI GCNGC 8 cut(s) 91, 221, 224, 265, 641, 692, 1025, 1150
BmiI GGNNCC 1 cut(s) 88
BmsI GCATC 1 cut(s) 265
BpiI GAAGAC 1 cut(s) 458
Bpu10I CCTNAGC 2 cut(s) 267, 1083
BpuEI CTTGAG 1 cut(s) 23
Bsa29I ATCGAT 1 cut(s) 601
BsaI GGTCTC 2 cut(s) 711, 1118
BsaJI CCNNGG 4 cut(s) 93, 317, 831, 1021
BsaWI WCCGGW 1 cut(s) 658
Bse118I RCCGGY 1 cut(s) 1096
Bse3DI GCAATG 2 cut(s) 780, 1026
BseCI ATCGAT 1 cut(s) 601
BseDI CCNNGG 4 cut(s) 93, 317, 831, 1021
BseGI GGATG 1 cut(s) 327
BseMI GCAATG 2 cut(s) 780, 1026
BseMII CTCAG 4 cut(s) 281, 557, 1051, 1074
BseRI GAGGAG 2 cut(s) 870, 1025
BseXI GCAGC 3 cut(s) 231, 250, 626
BsgI GTGCAG 1 cut(s) 984
Bsh1236I CGCG 1 cut(s) 1023
BshFI GGCC 6 cut(s) 307, 333, 693, 762, 789, 1011
BshNI GGYRCC 1 cut(s) 86
BshVI ATCGAT 1 cut(s) 601
BsiHKAI GWGCWC 2 cut(s) 379, 448
BsiSI CCGG 2 cut(s) 659, 1097
BslFI GGGAC 1 cut(s) 925
BsmAI GTCTC 4 cut(s) 69, 711, 826, 1118
BsmFI GGGAC 1 cut(s) 925
BsnI GGCC 6 cut(s) 307, 333, 693, 762, 789, 1011
Bso31I GGTCTC 2 cut(s) 711, 1118
Bsp1286I GDGCHC 2 cut(s) 379, 448
Bsp143I GATC 7 cut(s) 15, 598, 835, 884, 979, 1152, 1247
Bsp19I CCATGG 2 cut(s) 93, 317
BspACI CCGC 8 cut(s) 90, 155, 222, 690, 1021, 1023, 1100, 1148
BspANI GGCC 6 cut(s) 307, 333, 693, 762, 789, 1011
BspCNI CTCAG 4 cut(s) 280, 558, 1050, 1075
BspDI ATCGAT 1 cut(s) 601
BspFNI CGCG 1 cut(s) 1023
BspLI GGNNCC 1 cut(s) 88
BspPI GGATC 5 cut(s) 843, 879, 974, 1147, 1255
BspT107I GGYRCC 1 cut(s) 86
BspTNI GGTCTC 2 cut(s) 711, 1118
BsrDI GCAATG 2 cut(s) 780, 1026
BsrFI RCCGGY 1 cut(s) 1096
BssAI RCCGGY 1 cut(s) 1096
BssECI CCNNGG 4 cut(s) 93, 317, 831, 1021
BssMI GATC 7 cut(s) 15, 598, 835, 884, 979, 1152, 1247
BssT1I CCWWGG 2 cut(s) 93, 317
Bst4CI ACNGT 3 cut(s) 193, 374, 443
Bst6I CTCTTC 1 cut(s) 880
BstC8I GCNNGC 2 cut(s) 280, 787
BstDEI CTNAG 6 cut(s) 44, 267, 566, 1037, 1083, 1131
BstDSI CCRYGG 3 cut(s) 93, 317, 1021
BstF5I GGATG 1 cut(s) 327
BstFNI CGCG 1 cut(s) 1023
BstKTI GATC 7 cut(s) 18, 601, 838, 887, 982, 1155, 1250
BstMAI GTCTC 4 cut(s) 69, 711, 826, 1118
BstMBI GATC 7 cut(s) 15, 598, 835, 884, 979, 1152, 1247
BstMWI GCNNNNNNNGC 1 cut(s) 791
BstUI CGCG 1 cut(s) 1023
BstV1I GCAGC 3 cut(s) 231, 250, 626
BstV2I GAAGAC 1 cut(s) 458
BstX2I RGATCY 2 cut(s) 835, 1247
BstXI CCANNNNNNTGG 1 cut(s) 908
BstYI RGATCY 2 cut(s) 835, 1247
Bsu15I ATCGAT 1 cut(s) 601
BsuI GTATCC 1 cut(s) 179
BsuRI GGCC 6 cut(s) 307, 333, 693, 762, 789, 1011
BsuTUI ATCGAT 1 cut(s) 601
BtgI CCRYGG 3 cut(s) 93, 317, 1021
BtgZI GCGATG 3 cut(s) 489, 637, 932
BtsCI GGATG 1 cut(s) 327
BtsIMutI CAGTG 4 cut(s) 189, 379, 448, 754
Cac8I GCNNGC 2 cut(s) 280, 787
Cfr10I RCCGGY 1 cut(s) 1096
Cfr42I CCGCGG 1 cut(s) 1024
ClaI ATCGAT 1 cut(s) 601
CseI GACGC 1 cut(s) 1095
Csp6I GTAC 3 cut(s) 370, 439, 1018
CviQI GTAC 3 cut(s) 370, 439, 1018
DdeI CTNAG 6 cut(s) 44, 267, 566, 1037, 1083, 1131
DpnI GATC 7 cut(s) 17, 600, 837, 886, 981, 1154, 1249
DpnII GATC 7 cut(s) 15, 598, 835, 884, 979, 1152, 1247
EaeI YGGCCR 2 cut(s) 331, 760
Eam1104I CTCTTC 1 cut(s) 880
EarI CTCTTC 1 cut(s) 880
Eco130I CCWWGG 2 cut(s) 93, 317
Eco147I AGGCCT 1 cut(s) 307
Eco31I GGTCTC 2 cut(s) 711, 1118
Eco57I CTGAAG 2 cut(s) 199, 730
EcoT14I CCWWGG 2 cut(s) 93, 317
EcoT22I ATGCAT 1 cut(s) 1190
ErhI CCWWGG 2 cut(s) 93, 317
FalI AAGNNNNNCTT 2 cut(s) 197, 229
FaqI GGGAC 1 cut(s) 925
FauI CCCGC 1 cut(s) 148
FauNDI CATATG 1 cut(s) 140
FbaI TGATCA 1 cut(s) 15
Fnu4HI GCNGC 8 cut(s) 90, 220, 223, 264, 640, 691, 1024, 1149
FokI GGATG 1 cut(s) 334
Fsp4HI GCNGC 8 cut(s) 90, 220, 223, 264, 640, 691, 1024, 1149
FspBI CTAG 3 cut(s) 132, 665, 1251
GluI GCNGC 8 cut(s) 90, 220, 223, 264, 640, 691, 1024, 1149
HaeIII GGCC 6 cut(s) 307, 333, 693, 762, 789, 1011
HapII CCGG 2 cut(s) 659, 1097
HgaI GACGC 1 cut(s) 1095
HindIII AAGCTT 1 cut(s) 963
HinfI GANTC 6 cut(s) 52, 168, 399, 474, 1127, 1226
HpaII CCGG 2 cut(s) 659, 1097
HphI GGTGA 3 cut(s) 359, 989, 1136
Hpy166II GTNNAC 1 cut(s) 350
Hpy188I TCNGA 7 cut(s) 57, 529, 556, 628, 835, 1040, 1210
Hpy188III TCNNGA 3 cut(s) 301, 853, 1245
Hpy8I GTNNAC 1 cut(s) 350
Hpy99I CGWCG 1 cut(s) 584
HpyAV CCTTC 5 cut(s) 42, 223, 263, 318, 679
HpyCH4III ACNGT 3 cut(s) 193, 374, 443
HpyCH4V TGCA 6 cut(s) 278, 458, 844, 1001, 1031, 1188
HpyF10VI GCNNNNNNNGC 1 cut(s) 791
HpyF3I CTNAG 6 cut(s) 44, 267, 566, 1037, 1083, 1131
Ksp22I TGATCA 1 cut(s) 15
KspI CCGCGG 1 cut(s) 1024
Kzo9I GATC 7 cut(s) 15, 598, 835, 884, 979, 1152, 1247
LmnI GCTCC 1 cut(s) 661
Lsp1109I GCAGC 3 cut(s) 231, 250, 626
LweI GCATC 1 cut(s) 265
MaeI CTAG 3 cut(s) 132, 665, 1251
MaeIII GTNAC 1 cut(s) 148
MalI GATC 7 cut(s) 17, 600, 837, 886, 981, 1154, 1249
MboI GATC 7 cut(s) 15, 598, 835, 884, 979, 1152, 1247
MboII GAAGA 7 cut(s) 458, 494, 603, 736, 867, 946, 1230
MflI RGATCY 2 cut(s) 835, 1247
MhlI GDGCHC 2 cut(s) 379, 448
MlsI TGGCCA 1 cut(s) 333
MluCI AATT 5 cut(s) 312, 558, 594, 622, 1061
MluNI TGGCCA 1 cut(s) 333
MlyI GAGTC 2 cut(s) 46, 1136
MmeI TCCRAC 2 cut(s) 741, 1007
Mox20I TGGCCA 1 cut(s) 333
Mph1103I ATGCAT 1 cut(s) 1190
MscI TGGCCA 1 cut(s) 333
MseI TTAA 4 cut(s) 60, 71, 120, 290
MslI CAYNNNNRTG 1 cut(s) 1183
Msp20I TGGCCA 1 cut(s) 333
MspA1I CMGCKG 3 cut(s) 222, 1023, 1148
MspI CCGG 2 cut(s) 659, 1097
MvnI CGCG 1 cut(s) 1023
MwoI GCNNNNNNNGC 1 cut(s) 791
NcoI CCATGG 2 cut(s) 93, 317
NdeI CATATG 1 cut(s) 140
NdeII GATC 7 cut(s) 15, 598, 835, 884, 979, 1152, 1247
NlaIV GGNNCC 1 cut(s) 88
NmuCI GTSAC 1 cut(s) 148
NsiI ATGCAT 1 cut(s) 1190
PceI AGGCCT 1 cut(s) 307
PfeI GAWTC 4 cut(s) 168, 399, 474, 1226
PkrI GCNGC 8 cut(s) 91, 221, 224, 265, 641, 692, 1025, 1150
PleI GAGTC 2 cut(s) 46, 1135
PpsI GAGTC 2 cut(s) 46, 1135
PspN4I GGNNCC 1 cut(s) 88
PsuI RGATCY 2 cut(s) 835, 1247
RsaI GTAC 3 cut(s) 371, 440, 1019
RsaNI GTAC 3 cut(s) 370, 439, 1018
RseI CAYNNNNRTG 1 cut(s) 1183
SacII CCGCGG 1 cut(s) 1024
SaqAI TTAA 4 cut(s) 60, 71, 120, 290
SatI GCNGC 8 cut(s) 90, 220, 223, 264, 640, 691, 1024, 1149
Sau3AI GATC 7 cut(s) 15, 598, 835, 884, 979, 1152, 1247
SchI GAGTC 2 cut(s) 46, 1136
SduI GDGCHC 2 cut(s) 379, 448
SfaNI GCATC 1 cut(s) 265
Sfr303I CCGCGG 1 cut(s) 1024
SgrAI CRCCGGYG 1 cut(s) 1096
SgrBI CCGCGG 1 cut(s) 1024
SmiMI CAYNNNNRTG 1 cut(s) 1183
SmlI CTYRAG 1 cut(s) 38
SmoI CTYRAG 1 cut(s) 38
Sse9I AATT 5 cut(s) 312, 558, 594, 622, 1061
SseBI AGGCCT 1 cut(s) 307
SsiI CCGC 8 cut(s) 90, 155, 222, 690, 1021, 1023, 1100, 1148
SspMI CTAG 3 cut(s) 132, 665, 1251
StuI AGGCCT 1 cut(s) 307
StyI CCWWGG 2 cut(s) 93, 317
TaaI ACNGT 3 cut(s) 193, 374, 443
TaqI TCGA 2 cut(s) 601, 883
TasI AATT 5 cut(s) 312, 558, 594, 622, 1061
TauI GCSGC 5 cut(s) 92, 225, 693, 1026, 1151
TfiI GAWTC 4 cut(s) 168, 399, 474, 1226
Tru1I TTAA 4 cut(s) 60, 71, 120, 290
Tru9I TTAA 4 cut(s) 60, 71, 120, 290
TscAI CASTG 4 cut(s) 196, 379, 448, 754
TseFI GTSAC 1 cut(s) 148
TseI GCWGC 3 cut(s) 219, 263, 639
Tsp45I GTSAC 1 cut(s) 148
TspDTI ATGAA 5 cut(s) 341, 458, 1205, 1218, 1230
TspRI CASTG 4 cut(s) 196, 379, 448, 754
XapI RAATTY 1 cut(s) 622
XcmI CCANNNNNNNNNTGG 1 cut(s) 341
XspI CTAG 3 cut(s) 132, 665, 1251
Zsp2I ATGCAT 1 cut(s) 1190
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.