Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002840.1

Orthogroup ID

OG0001164

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1062

Gene Structure 1062 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002840.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1009 bp

atggagactgacgatttcgacaatgttcaagctggaaaacaaatggttcaggctagagactcgactgaaaaggcattcagagacacagaggtgcccccatggaccatgcaaataacggtcaggtctatggtcacaagcttttttcttagcatcatcttcaacttcatcgtgtgcaagctcaatcttaccaccggtgtaataccatctctaaacgtcgcagcggggctgttgggattcgcactgctgaaaggatacactgccttgcttcagaagttaggtctgttgaagcagcctttcactcgtcaagaaaacacagtggttcaaacctgtgttgtggcgtcgtctgggatagccttcagcagtggcacggcgagttatttactaggtatgagccctcaggtagctgctcagggagatgctggaaacactctaatcaacattaagaggctttcgattccctggatgacaggatatctcttcacagtcagcttcgctggccttttttcgataatagccttgagagagatgatgatcctcaaaagaaaactgacctacccaagtggaacagcaacagcacacctcatcaacagcttccacacccccaaaggagctaggatggcagcgagacaagtttctgctctcttcaagagctgctgcggcagctttgtctggtcttttttccagtggtttttcgcagcttcggatggctgtgggtttgctagctttccaatttttggtctaaaagcttataaacaaaggttttacttcgacttctcaaccacatatattggttgtggaatgatcacctcttacatggtgaacatatccatgctcgttggggctgtgatatcatggggaatcatgtggcctttgattgaacaaaagaaaggtatctggtatggagctcatctttctgcaagtagtcttcatggaatccaaggttacagggtctttatctccataggcatgatacttggtgatggactataccatgttatgtaccatgctg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0008150 GO:0016020 GO:0022857 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

OPT

Protein Analysis

336

Amino Acids

37.02

Weight (kDa)

9.42

Isoelectric Point (pI)

27.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001164)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65730
fragaria_vesca	FvH4_1g25380 FvH4_4g36810
malus_domestica	MD13G1006700.v1.1 MD16G1001100.v1.1
prunus_persica	Prupe.1G346200_v2.0.a1 Prupe.1G346200_v2.0.a1
pyrus_communis	pycom13g00560 pycom16g00430
rosa_chinensis	RchiOBHm_Chr2g0123411 RchiOBHm_Chr4g0446541 RchiOBHm_Chr5g0030651 RchiOBHm_Chr5g0030671 RchiOBHm_Chr6g0294131
rosa_laevigata	RLG00000005650 RLG00000011896 RLG00000018750 RLG00000018751 RLG00000033236 RLG00000033243
rosa_multiflora	Rmu_co8173216.1_g000001 Rmu_sc0002840.1_g000001 Rmu_sc0003238.1_g000020 Rmu_sc0005037.1_g000008 Rmu_sc0005876.1_g000010 Rmu_sc0008328.1_g000001 Rmu_sc0022360.1_g000001 Rmu_ssc0000144.1_g000011 Rmu_ssc0000144.1_g000013
rosa_roxburghii	Rroxscaffold_1G00049650 Rroxscaffold_5G00386960 Rroxscaffold_7G00173620
rosa_rugosa	Rorug04G0372300 Rorug05G0119100 Rorug06G0241800
rosa_samantha	Rh2AG304200 Rh2BG312200 Rh2CG290700 Rh2DG328200 Rh4AG434000 Rh4BG443200 Rh4CG460500 Rh4DG441800 Rh5AG211400 Rh5AG211600 Rh5BG210500 Rh5CG234100 Rh5DG215400 Rh5DG215700 Rh6BG361000 Rh6CG368300 Rh6DG354900
rosa_wichuraiana	Rw2G024350 Rw4G037100 Rw5G019350 Rw5G019390 Rw6G030860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	750
AccB1I	GGYRCC	1 cut(s)	91
AccB7I	CCANNNNNTGG	1 cut(s)	734
AciI	CCGC	2 cut(s)	221, 657
AclWI	GGATC	1 cut(s)	526
AcuI	CTGAAG	2 cut(s)	251, 340
AcyI	GRCGYC	1 cut(s)	338
AfaI	GTAC	1 cut(s)	1001
AfiI	CCNNNNNNNGG	1 cut(s)	734
AgeI	ACCGGT	1 cut(s)	191
AgsI	TTSAA	6 cut(s)	29, 160, 286, 323, 646, 878
AjnI	CCWGG	1 cut(s)	458
AleI	CACNNNNGTG	1 cut(s)	89
Alw21I	GWGCWC	1 cut(s)	907
Alw26I	GTCTC	3 cut(s)	51, 75, 619
AlwI	GGATC	1 cut(s)	526
AoxI	GGCC	2 cut(s)	496, 866
ApeKI	GCWGC	8 cut(s)	218, 289, 404, 620, 651, 654, 660, 695
AsiGI	ACCGGT	1 cut(s)	191
AspS9I	GGNCC	1 cut(s)	102
AsuHPI	GGTGA	3 cut(s)	796, 829, 989
AsuNHI	GCTAGC	1 cut(s)	719
AvaII	GGWCC	1 cut(s)	102
AxyI	CCTNAGG	1 cut(s)	396
BaeGI	GKGCMC	1 cut(s)	96
BanI	GGYRCC	1 cut(s)	91
BanII	GRGCYC	2 cut(s)	395, 907
BbsI	GAAGAC	1 cut(s)	917
Bbv12I	GWGCWC	1 cut(s)	907
BbvI	GCAGC	8 cut(s)	230, 301, 391, 632, 638, 641, 672, 707
BccI	CCATC	4 cut(s)	211, 610, 698, 974
BceAI	ACGGC	1 cut(s)	384
BciT130I	CCWGG	1 cut(s)	460
BciVI	GTATCC	1 cut(s)	245
BclI	TGATCA	1 cut(s)	801
BcoDI	GTCTC	3 cut(s)	51, 75, 619
BfaI	CTAG	4 cut(s)	54, 383, 612, 720
BfuI	GTATCC	1 cut(s)	245
BisI	GCNGC	9 cut(s)	219, 290, 405, 621, 652, 655, 658, 661, 696
BlsI	GCNGC	9 cut(s)	220, 291, 406, 622, 653, 656, 659, 662, 697
Bme1390I	CCNGG	1 cut(s)	460
Bme18I	GGWCC	1 cut(s)	102
BmgT120I	GGNCC	1 cut(s)	102
BmiI	GGNNCC	1 cut(s)	93
BmrFI	CCNGG	1 cut(s)	460
BmsI	GCATC	2 cut(s)	159, 406
BmtI	GCTAGC	1 cut(s)	723
BpiI	GAAGAC	1 cut(s)	917
Bpu10I	CCTNAGC	1 cut(s)	408
BpuEI	CTTGAG	1 cut(s)	538
BsaBI	GATNNNNATC	1 cut(s)	530
BsaHI	GRCGYC	1 cut(s)	338
BsaJI	CCNNGG	3 cut(s)	98, 458, 937
BsaWI	WCCGGW	1 cut(s)	191
Bsc4I	CCNNNNNNNGG	1 cut(s)	734
Bse118I	RCCGGY	1 cut(s)	191
Bse1I	ACTGG	1 cut(s)	682
Bse21I	CCTNAGG	1 cut(s)	396
Bse8I	GATNNNNATC	1 cut(s)	530
BseBI	CCWGG	1 cut(s)	460
BseDI	CCNNGG	3 cut(s)	98, 458, 937
BseGI	GGATG	3 cut(s)	468, 621, 709
BseJI	GATNNNNATC	1 cut(s)	530
BseLI	CCNNNNNNNGG	1 cut(s)	734
BseMII	CTCAG	2 cut(s)	410, 422
BseNI	ACTGG	1 cut(s)	682
BseSI	GKGCMC	1 cut(s)	96
BseXI	GCAGC	8 cut(s)	230, 301, 391, 632, 638, 641, 672, 707
BshFI	GGCC	2 cut(s)	498, 868
BshNI	GGYRCC	1 cut(s)	91
BshTI	ACCGGT	1 cut(s)	191
BsiHKAI	GWGCWC	1 cut(s)	907
BsiSI	CCGG	1 cut(s)	192
BslI	CCNNNNNNNGG	1 cut(s)	734
BsmAI	GTCTC	3 cut(s)	51, 75, 619
BsmI	GAATGC	1 cut(s)	74
BsnI	GGCC	2 cut(s)	498, 868
Bsp1286I	GDGCHC	3 cut(s)	96, 395, 907
Bsp143I	GATC	2 cut(s)	531, 801
Bsp19I	CCATGG	1 cut(s)	98
BspACI	CCGC	2 cut(s)	221, 657
BspANI	GGCC	2 cut(s)	498, 868
BspCNI	CTCAG	2 cut(s)	409, 421
BspLI	GGNNCC	1 cut(s)	93
BspOI	GCTAGC	1 cut(s)	723
BspPI	GGATC	1 cut(s)	526
BspT107I	GGYRCC	1 cut(s)	91
BsrFI	RCCGGY	1 cut(s)	191
BsrI	ACTGG	1 cut(s)	682
BssAI	RCCGGY	1 cut(s)	191
BssECI	CCNNGG	3 cut(s)	98, 458, 937
BssMI	GATC	2 cut(s)	531, 801
BssNI	GRCGYC	1 cut(s)	338
BssT1I	CCWWGG	2 cut(s)	98, 937
Bst2UI	CCWGG	1 cut(s)	460
Bst4CI	ACNGT	3 cut(s)	118, 316, 484
Bst6I	CTCTTC	2 cut(s)	482, 647
BstACI	GRCGYC	1 cut(s)	338
BstC8I	GCNNGC	3 cut(s)	176, 496, 721
BstDEI	CTNAG	3 cut(s)	146, 396, 408
BstDSI	CCRYGG	1 cut(s)	98
BstF5I	GGATG	3 cut(s)	468, 621, 709
BstKTI	GATC	2 cut(s)	534, 804
BstMAI	GTCTC	3 cut(s)	51, 75, 619
BstMBI	GATC	2 cut(s)	531, 801
BstMWI	GCNNNNNNNGC	4 cut(s)	495, 617, 657, 660
BstNI	CCWGG	1 cut(s)	460
BstSCI	CCNGG	1 cut(s)	458
BstSLI	GKGCMC	1 cut(s)	96
BstV1I	GCAGC	8 cut(s)	230, 301, 391, 632, 638, 641, 672, 707
BstV2I	GAAGAC	1 cut(s)	917
Bsu36I	CCTNAGG	1 cut(s)	396
BsuI	GTATCC	1 cut(s)	245
BsuRI	GGCC	2 cut(s)	498, 868
BtgI	CCRYGG	1 cut(s)	98
BtsCI	GGATG	3 cut(s)	468, 621, 709
BtsI	GCAGTG	3 cut(s)	239, 255, 367
BtsIMutI	CAGTG	5 cut(s)	239, 255, 321, 367, 689
Cac8I	GCNNGC	3 cut(s)	176, 496, 721
Cfr10I	RCCGGY	1 cut(s)	191
Cfr13I	GGNCC	1 cut(s)	102
CseI	GACGC	1 cut(s)	327
Csp6I	GTAC	1 cut(s)	1000
CspAI	ACCGGT	1 cut(s)	191
CspCI	CAANNNNNGTGG	2 cut(s)	769, 804
CviQI	GTAC	1 cut(s)	1000
DdeI	CTNAG	3 cut(s)	146, 396, 408
DpnI	GATC	2 cut(s)	533, 803
DpnII	GATC	2 cut(s)	531, 801
Eam1104I	CTCTTC	2 cut(s)	482, 647
EarI	CTCTTC	2 cut(s)	482, 647
Ecl136II	GAGCTC	1 cut(s)	905
Eco130I	CCWWGG	2 cut(s)	98, 937
Eco24I	GRGCYC	2 cut(s)	395, 907
Eco32I	GATATC	2 cut(s)	473, 849
Eco47I	GGWCC	1 cut(s)	102
Eco53kI	GAGCTC	1 cut(s)	905
Eco57I	CTGAAG	2 cut(s)	251, 340
Eco81I	CCTNAGG	1 cut(s)	396
EcoICRI	GAGCTC	1 cut(s)	905
EcoRII	CCWGG	1 cut(s)	458
EcoRV	GATATC	2 cut(s)	473, 849
EcoT14I	CCWWGG	2 cut(s)	98, 937
EcoT38I	GRGCYC	2 cut(s)	395, 907
ErhI	CCWWGG	2 cut(s)	98, 937
FauI	CCCGC	1 cut(s)	214
FbaI	TGATCA	1 cut(s)	801
Fnu4HI	GCNGC	9 cut(s)	219, 290, 405, 621, 652, 655, 658, 661, 696
FokI	GGATG	3 cut(s)	475, 628, 716
FriOI	GRGCYC	2 cut(s)	395, 907
Fsp4HI	GCNGC	9 cut(s)	219, 290, 405, 621, 652, 655, 658, 661, 696
FspBI	CTAG	4 cut(s)	54, 383, 612, 720
GluI	GCNGC	9 cut(s)	219, 290, 405, 621, 652, 655, 658, 661, 696
HaeIII	GGCC	2 cut(s)	498, 868
HapII	CCGG	1 cut(s)	192
HgaI	GACGC	1 cut(s)	327
Hin1I	GRCGYC	1 cut(s)	338
HindIII	AAGCTT	2 cut(s)	136, 744
HinfI	GANTC	5 cut(s)	59, 234, 454, 858, 933
HpaII	CCGG	1 cut(s)	192
HphI	GGTGA	3 cut(s)	796, 829, 989
Hpy166II	GTNNAC	1 cut(s)	820
Hpy188I	TCNGA	3 cut(s)	80, 270, 703
Hpy188III	TCNNGA	2 cut(s)	305, 646
Hpy8I	GTNNAC	1 cut(s)	820
Hpy99I	CGWCG	2 cut(s)	218, 343
HpyAV	CCTTC	1 cut(s)	364
HpyCH4III	ACNGT	3 cut(s)	118, 316, 484
HpyCH4IV	ACGT	1 cut(s)	213
HpyCH4V	TGCA	3 cut(s)	109, 174, 917
HpyF10VI	GCNNNNNNNGC	4 cut(s)	495, 617, 657, 660
HpyF3I	CTNAG	3 cut(s)	146, 396, 408
HpySE526I	ACGT	1 cut(s)	213
Hsp92I	GRCGYC	1 cut(s)	338
Ksp22I	TGATCA	1 cut(s)	801
Kzo9I	GATC	2 cut(s)	531, 801
LmnI	GCTCC	2 cut(s)	608, 902
Lsp1109I	GCAGC	8 cut(s)	230, 301, 391, 632, 638, 641, 672, 707
LweI	GCATC	2 cut(s)	159, 406
MaeI	CTAG	4 cut(s)	54, 383, 612, 720
MaeII	ACGT	1 cut(s)	213
MaeIII	GTNAC	2 cut(s)	130, 941
MalI	GATC	2 cut(s)	533, 803
MboI	GATC	2 cut(s)	531, 801
MboII	GAAGA	4 cut(s)	148, 469, 634, 917
MhlI	GDGCHC	3 cut(s)	96, 395, 907
MluCI	AATT	1 cut(s)	729
MlyI	GAGTC	1 cut(s)	53
MnlI	CCTC	6 cut(s)	82, 405, 438, 545, 590, 817
MseI	TTAA	1 cut(s)	441
MslI	CAYNNNNRTG	3 cut(s)	89, 827, 965
MspA1I	CMGCKG	1 cut(s)	221
MspI	CCGG	1 cut(s)	192
MspR9I	CCNGG	1 cut(s)	460
Mva1269I	GAATGC	1 cut(s)	74
MvaI	CCWGG	1 cut(s)	460
MwoI	GCNNNNNNNGC	4 cut(s)	495, 617, 657, 660
NcoI	CCATGG	1 cut(s)	98
NdeII	GATC	2 cut(s)	531, 801
NheI	GCTAGC	1 cut(s)	719
NlaIV	GGNNCC	1 cut(s)	93
NmuCI	GTSAC	1 cut(s)	130
OliI	CACNNNNGTG	1 cut(s)	89
PctI	GAATGC	1 cut(s)	74
PfeI	GAWTC	4 cut(s)	234, 454, 858, 933
PflMI	CCANNNNNTGG	1 cut(s)	734
PinAI	ACCGGT	1 cut(s)	191
PkrI	GCNGC	9 cut(s)	220, 291, 406, 622, 653, 656, 659, 662, 697
PleI	GAGTC	1 cut(s)	53
PpsI	GAGTC	1 cut(s)	53
PsiI	TTATAA	1 cut(s)	750
Psp124BI	GAGCTC	1 cut(s)	907
Psp6I	CCWGG	1 cut(s)	458
PspGI	CCWGG	1 cut(s)	458
PspN4I	GGNNCC	1 cut(s)	93
PspPI	GGNCC	1 cut(s)	102
RsaI	GTAC	1 cut(s)	1001
RsaNI	GTAC	1 cut(s)	1000
RseI	CAYNNNNRTG	3 cut(s)	89, 827, 965
SacI	GAGCTC	1 cut(s)	907
SaqAI	TTAA	1 cut(s)	441
SatI	GCNGC	9 cut(s)	219, 290, 405, 621, 652, 655, 658, 661, 696
Sau3AI	GATC	2 cut(s)	531, 801
Sau96I	GGNCC	1 cut(s)	102
SchI	GAGTC	1 cut(s)	53
ScrFI	CCNGG	1 cut(s)	460
SduI	GDGCHC	3 cut(s)	96, 395, 907
SfaNI	GCATC	2 cut(s)	159, 406
SgrAI	CRCCGGYG	1 cut(s)	191
SinI	GGWCC	1 cut(s)	102
SmiMI	CAYNNNNRTG	3 cut(s)	89, 827, 965
SmlI	CTYRAG	1 cut(s)	517
SmoI	CTYRAG	1 cut(s)	517
Sse9I	AATT	1 cut(s)	729
SsiI	CCGC	2 cut(s)	221, 657
SspMI	CTAG	4 cut(s)	54, 383, 612, 720
SstI	GAGCTC	1 cut(s)	907
StyD4I	CCNGG	1 cut(s)	458
StyI	CCWWGG	2 cut(s)	98, 937
TaaI	ACNGT	3 cut(s)	118, 316, 484
TaiI	ACGT	1 cut(s)	216
TaqI	TCGA	5 cut(s)	18, 62, 452, 506, 768
TasI	AATT	1 cut(s)	729
TauI	GCSGC	1 cut(s)	660
TfiI	GAWTC	4 cut(s)	234, 454, 858, 933
Tru1I	TTAA	1 cut(s)	441
Tru9I	TTAA	1 cut(s)	441
TscAI	CASTG	5 cut(s)	246, 262, 321, 367, 689
TseFI	GTSAC	1 cut(s)	130
TseI	GCWGC	8 cut(s)	218, 289, 404, 620, 651, 654, 660, 695
Tsp45I	GTSAC	1 cut(s)	130
TspDTI	ATGAA	2 cut(s)	154, 917
TspRI	CASTG	5 cut(s)	246, 262, 321, 367, 689
Van91I	CCANNNNNTGG	1 cut(s)	734
VpaK11BI	GGWCC	1 cut(s)	102
XspI	CTAG	4 cut(s)	54, 383, 612, 720

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.