Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0001164

Physical Location & Seq

Genomic Coordinates Forward (+)

59130397 .. 59132093

Gene Structure 1697 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG361000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGGTATGCCGCGGCGGGGCTATTGGGATTCGCACTGCTGAAAGGATACACTGTCTTGCTTCAAAAGTTAGGTATGTTGAAGTAGCCTTTCACTCGTCAAGAAAACACAGTGATTCAAATCTGTGTTGTGGGTTCGTCTGCAATAGCCTTCAGCAGCGGCATGACGAGTTATTTACTATGGATGAGCCCTCTTGTAGCTGCTCAGGGAGATGCAGGCAACACTTTAATCAGCATCAAGAGGCCTTCAATTCCATGGATGACGCTTACATCATCACCCCGGTTCTAGCCTTCTGTAATGCCTATGGTTGCGGCATCACAGATTGGTCTCTTGCTTCCAACTACGGCAAAATCGCAATTCTCATCTTCAGTGCTTGGCTTGGCCGTGAAAAAGGTGGTGTCATTGATGGCCTTGCTTCTTGTGGTGTAATGATAAGCATTGTCTCAACAGCCTCGGATCTCATGCAAGACTTCAAGACCGGATACCTAACTCTCTCTTCTCCTCGATCCATGTTCGTTAGCCAAGTTTTCGGGACAGCCATGGGGTGTGTCATGGCTCCTTTGATATTCTGGTTCTTCTACAAAGCTTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0008150 GO:0016020 GO:0022857 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

OPT

Protein Analysis

196

Amino Acids

21.67

Weight (kDa)

7.51

Isoelectric Point (pI)

31.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
OPT	PF03169	88 - 196	1.4e-31	OPT oligopeptide transporter protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001164)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65730
fragaria_vesca	FvH4_1g25380 FvH4_4g36810
malus_domestica	MD13G1006700.v1.1 MD16G1001100.v1.1
prunus_persica	Prupe.1G346200_v2.0.a1 Prupe.1G346200_v2.0.a1
pyrus_communis	pycom13g00560 pycom16g00430
rosa_chinensis	RchiOBHm_Chr2g0123411 RchiOBHm_Chr4g0446541 RchiOBHm_Chr5g0030651 RchiOBHm_Chr5g0030671 RchiOBHm_Chr6g0294131
rosa_laevigata	RLG00000005650 RLG00000011896 RLG00000018750 RLG00000018751 RLG00000033236 RLG00000033243
rosa_multiflora	Rmu_co8173216.1_g000001 Rmu_sc0002840.1_g000001 Rmu_sc0003238.1_g000020 Rmu_sc0005037.1_g000008 Rmu_sc0005876.1_g000010 Rmu_sc0008328.1_g000001 Rmu_sc0022360.1_g000001 Rmu_ssc0000144.1_g000011 Rmu_ssc0000144.1_g000013
rosa_roxburghii	Rroxscaffold_1G00049650 Rroxscaffold_5G00386960 Rroxscaffold_7G00173620
rosa_rugosa	Rorug04G0372300 Rorug05G0119100 Rorug06G0241800
rosa_samantha	Rh2AG304200 Rh2BG312200 Rh2CG290700 Rh2DG328200 Rh4AG434000 Rh4BG443200 Rh4CG460500 Rh4DG441800 Rh5AG211400 Rh5AG211600 Rh5BG210500 Rh5CG234100 Rh5DG215400 Rh5DG215700 Rh6BG361000 Rh6CG368300 Rh6DG354900
rosa_wichuraiana	Rw2G024350 Rw4G037100 Rw5G019350 Rw5G019390 Rw6G030860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	12
AciI	CCGC	5 cut(s)	10, 12, 15, 157, 309
AclWI	GGATC	2 cut(s)	462, 498
AcoI	YGGCCR	1 cut(s)	379
AcuI	CTGAAG	2 cut(s)	134, 349
AfiI	CCNNNNNNNGG	1 cut(s)	16
AgsI	TTSAA	5 cut(s)	63, 80, 117, 247, 472
AluBI	AGCT	2 cut(s)	198, 584
AluI	AGCT	2 cut(s)	198, 584
Alw26I	GTCTC	2 cut(s)	330, 445
AlwI	GGATC	2 cut(s)	462, 498
AoxI	GGCC	3 cut(s)	240, 379, 406
ApeKI	GCWGC	2 cut(s)	154, 198
AsuC2I	CCSGG	1 cut(s)	278
AsuHPI	GGTGA	1 cut(s)	265
BanII	GRGCYC	1 cut(s)	189
BbvI	GCAGC	2 cut(s)	166, 185
BccI	CCATC	1 cut(s)	398
BceAI	ACGGC	2 cut(s)	358, 366
BciVI	GTATCC	2 cut(s)	39, 473
BcnI	CCSGG	1 cut(s)	278
BcoDI	GTCTC	2 cut(s)	330, 445
BfaI	CTAG	1 cut(s)	284
BfuI	GTATCC	2 cut(s)	39, 473
BisI	GCNGC	6 cut(s)	10, 13, 155, 158, 199, 310
BlsI	GCNGC	6 cut(s)	11, 14, 156, 159, 200, 311
Bme1390I	CCNGG	1 cut(s)	278
BmiI	GGNNCC	1 cut(s)	555
BmrFI	CCNGG	1 cut(s)	278
BmsI	GCATC	3 cut(s)	200, 241, 321
Bpu10I	CCTNAGC	1 cut(s)	202
BpuMI	CCSGG	1 cut(s)	278
BsaBI	GATNNNNATC	1 cut(s)	117
BsaI	GGTCTC	1 cut(s)	330
BsaJI	CCNNGG	5 cut(s)	10, 252, 276, 450, 537
BsaWI	WCCGGW	1 cut(s)	476
Bsc4I	CCNNNNNNNGG	1 cut(s)	16
Bse8I	GATNNNNATC	1 cut(s)	117
BseDI	CCNNGG	5 cut(s)	10, 252, 276, 450, 537
BseGI	GGATG	2 cut(s)	187, 262
BseJI	GATNNNNATC	1 cut(s)	117
BseLI	CCNNNNNNNGG	1 cut(s)	16
BseMII	CTCAG	1 cut(s)	216
BseRI	GAGGAG	1 cut(s)	489
BseXI	GCAGC	2 cut(s)	166, 185
Bsh1236I	CGCG	1 cut(s)	12
BshFI	GGCC	3 cut(s)	242, 381, 408
BsiSI	CCGG	2 cut(s)	278, 477
BslFI	GGGAC	1 cut(s)	544
BslI	CCNNNNNNNGG	1 cut(s)	16
BsmAI	GTCTC	2 cut(s)	330, 445
BsmFI	GGGAC	1 cut(s)	544
BsnI	GGCC	3 cut(s)	242, 381, 408
Bso31I	GGTCTC	1 cut(s)	330
Bsp1286I	GDGCHC	1 cut(s)	189
Bsp143I	GATC	2 cut(s)	454, 503
Bsp19I	CCATGG	2 cut(s)	252, 537
BspACI	CCGC	5 cut(s)	10, 12, 15, 157, 309
BspANI	GGCC	3 cut(s)	242, 381, 408
BspCNI	CTCAG	1 cut(s)	215
BspFNI	CGCG	1 cut(s)	12
BspLI	GGNNCC	1 cut(s)	555
BspPI	GGATC	2 cut(s)	462, 498
BspTNI	GGTCTC	1 cut(s)	330
BssECI	CCNNGG	5 cut(s)	10, 252, 276, 450, 537
BssMI	GATC	2 cut(s)	454, 503
BssT1I	CCWWGG	2 cut(s)	252, 537
Bst4CI	ACNGT	2 cut(s)	53, 110
Bst6I	CTCTTC	1 cut(s)	499
BstC8I	GCNNGC	1 cut(s)	215
BstDEI	CTNAG	1 cut(s)	202
BstDSI	CCRYGG	3 cut(s)	10, 252, 537
BstF5I	GGATG	2 cut(s)	187, 262
BstFNI	CGCG	1 cut(s)	12
BstKTI	GATC	2 cut(s)	457, 506
BstMAI	GTCTC	2 cut(s)	330, 445
BstMBI	GATC	2 cut(s)	454, 503
BstSCI	CCNGG	1 cut(s)	276
BstUI	CGCG	1 cut(s)	12
BstV1I	GCAGC	2 cut(s)	166, 185
BstX2I	RGATCY	1 cut(s)	454
BstYI	RGATCY	1 cut(s)	454
BsuI	GTATCC	2 cut(s)	39, 473
BsuRI	GGCC	3 cut(s)	242, 381, 408
BtgI	CCRYGG	3 cut(s)	10, 252, 537
BtsCI	GGATG	2 cut(s)	187, 262
BtsI	GCAGTG	1 cut(s)	33
BtsIMutI	CAGTG	4 cut(s)	33, 49, 115, 373
Cac8I	GCNNGC	1 cut(s)	215
Cfr42I	CCGCGG	1 cut(s)	13
CseI	GACGC	1 cut(s)	269
CviAII	CATG	6 cut(s)	161, 253, 460, 508, 538, 550
DdeI	CTNAG	1 cut(s)	202
DpnI	GATC	2 cut(s)	456, 505
DpnII	GATC	2 cut(s)	454, 503
EaeI	YGGCCR	1 cut(s)	379
Eam1104I	CTCTTC	1 cut(s)	499
EarI	CTCTTC	1 cut(s)	499
Eco130I	CCWWGG	2 cut(s)	252, 537
Eco147I	AGGCCT	1 cut(s)	242
Eco24I	GRGCYC	1 cut(s)	189
Eco31I	GGTCTC	1 cut(s)	330
Eco57I	CTGAAG	2 cut(s)	134, 349
EcoT14I	CCWWGG	2 cut(s)	252, 537
EcoT38I	GRGCYC	1 cut(s)	189
ErhI	CCWWGG	2 cut(s)	252, 537
FaeI	CATG	6 cut(s)	164, 256, 463, 511, 541, 553
FaqI	GGGAC	1 cut(s)	544
FatI	CATG	6 cut(s)	160, 252, 459, 507, 537, 549
FauI	CCCGC	1 cut(s)	8
Fnu4HI	GCNGC	6 cut(s)	10, 13, 155, 158, 199, 310
FokI	GGATG	2 cut(s)	194, 269
FriOI	GRGCYC	1 cut(s)	189
Fsp4HI	GCNGC	6 cut(s)	10, 13, 155, 158, 199, 310
FspBI	CTAG	1 cut(s)	284
GluI	GCNGC	6 cut(s)	10, 13, 155, 158, 199, 310
HaeIII	GGCC	3 cut(s)	242, 381, 408
HapII	CCGG	2 cut(s)	278, 477
HgaI	GACGC	1 cut(s)	269
Hin1II	CATG	6 cut(s)	164, 256, 463, 511, 541, 553
HindIII	AAGCTT	1 cut(s)	582
HinfI	GANTC	2 cut(s)	28, 113
HpaII	CCGG	2 cut(s)	278, 477
HphI	GGTGA	1 cut(s)	265
Hpy188I	TCNGA	1 cut(s)	454
Hpy188III	TCNNGA	4 cut(s)	99, 236, 472, 529
HpyAV	CCTTC	3 cut(s)	158, 253, 298
HpyCH4III	ACNGT	2 cut(s)	53, 110
HpyCH4V	TGCA	3 cut(s)	141, 213, 463
HpyF3I	CTNAG	1 cut(s)	202
Hsp92II	CATG	6 cut(s)	164, 256, 463, 511, 541, 553
KspI	CCGCGG	1 cut(s)	13
Kzo9I	GATC	2 cut(s)	454, 503
LmnI	GCTCC	1 cut(s)	559
LpnPI	CCDG	5 cut(s)	189, 199, 291, 490, 553
Lsp1109I	GCAGC	2 cut(s)	166, 185
LweI	GCATC	3 cut(s)	200, 241, 321
MaeI	CTAG	1 cut(s)	284
MalI	GATC	2 cut(s)	456, 505
MboI	GATC	2 cut(s)	454, 503
MboII	GAAGA	3 cut(s)	355, 486, 565
MflI	RGATCY	1 cut(s)	454
MhlI	GDGCHC	1 cut(s)	189
MluCI	AATT	2 cut(s)	247, 354
MmeI	TCCRAC	1 cut(s)	360
MnlI	CCTC	4 cut(s)	199, 232, 460, 510
MseI	TTAA	1 cut(s)	225
MspA1I	CMGCKG	2 cut(s)	12, 157
MspI	CCGG	2 cut(s)	278, 477
MspR9I	CCNGG	1 cut(s)	278
MvnI	CGCG	1 cut(s)	12
NciI	CCSGG	1 cut(s)	278
NcoI	CCATGG	2 cut(s)	252, 537
NdeII	GATC	2 cut(s)	454, 503
NlaIII	CATG	6 cut(s)	164, 256, 463, 511, 541, 553
NlaIV	GGNNCC	1 cut(s)	555
PceI	AGGCCT	1 cut(s)	242
PfeI	GAWTC	2 cut(s)	28, 113
PkrI	GCNGC	6 cut(s)	11, 14, 156, 159, 200, 311
PspN4I	GGNNCC	1 cut(s)	555
PsuI	RGATCY	1 cut(s)	454
SacII	CCGCGG	1 cut(s)	13
SaqAI	TTAA	1 cut(s)	225
SatI	GCNGC	6 cut(s)	10, 13, 155, 158, 199, 310
Sau3AI	GATC	2 cut(s)	454, 503
ScrFI	CCNGG	1 cut(s)	278
SduI	GDGCHC	1 cut(s)	189
SetI	ASST	5 cut(s)	74, 200, 394, 486, 586
SfaNI	GCATC	3 cut(s)	200, 241, 321
Sfr303I	CCGCGG	1 cut(s)	13
SgrBI	CCGCGG	1 cut(s)	13
Sse9I	AATT	2 cut(s)	247, 354
SseBI	AGGCCT	1 cut(s)	242
SsiI	CCGC	5 cut(s)	10, 12, 15, 157, 309
SspMI	CTAG	1 cut(s)	284
StuI	AGGCCT	1 cut(s)	242
StyD4I	CCNGG	1 cut(s)	276
StyI	CCWWGG	2 cut(s)	252, 537
TaaI	ACNGT	2 cut(s)	53, 110
TaqI	TCGA	1 cut(s)	502
TasI	AATT	2 cut(s)	247, 354
TauI	GCSGC	4 cut(s)	12, 15, 160, 312
TfiI	GAWTC	2 cut(s)	28, 113
Tru1I	TTAA	1 cut(s)	225
Tru9I	TTAA	1 cut(s)	225
TscAI	CASTG	4 cut(s)	40, 56, 115, 373
TseI	GCWGC	2 cut(s)	154, 198
TspRI	CASTG	4 cut(s)	40, 56, 115, 373
XspI	CTAG	1 cut(s)	284

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.