Rroxscaffold_7G00213640

Protein of unknown function (DUF1005)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0016745
Physical Location & Seq
Forward (+)
64119742 .. 64121547
1806 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00213640.1

Sequence Viewer

Length: 1329 bp
ATGGATCCGTGCCCGTTCGTACGGATCCTCATCGGAGACTTGACCCTCAAGTTTCCCACCGTCTCCAAACCCTCTTTCTCCACCGTCCACCCTTCCTCCTCTCCCTGCTTCTGCAAAATCAAGCTCACCAACTTCCCCCACCAGTTCTCCGCCGTCCCCCTCATCCTCGACGACTCCGCCTCCGCCGCTCAGACCACCACCACCTCCGCCGCCGCCCGCTCCCACTCCCTCAACGCCTGCTTTAACCTCACTAAACCCCAAATCGAAACCCTATCCTCCAAGCGCCCCAGCCTCTCCATCTCCATCTACACCGGCCGCCGCGGCGCCACCTGCGGCCTCAACTCCGCCAAGCTCCTCGGCCGCGTCACCGTCCCGCTCGCCGAGCTCTCCACCGCCGTGTCCCGCCCCGTCGTCTACCAGAACGGCTGGATTGGAATCGGTGGCAAGAAGTCCGGGTCCGGATCCTCTCAGTCGCAATTCTTTTTAAGCGTCCGGGCCGAACCCGACCCGAGATTCGTGTTCAAGTTCGACGGAGAACCCGAGTGTAGCCCTCAGGTTTTCCAGGTCCAGGGAAATGTAAAGCAGCCGGTCTTCACTTGCAAATTTGGGTTCAGAAACGCCTCCGATATGCAATCACGGTCAATGTCCGAGCCGGGCACCCCAAGGAATTGGTTAGTGCCGTTTATGGGAGGCAACCAAAAGGAGCAGAGCGCGAAAGAGAGGAAAGGCTGGTCGCTGACGATCCACGACCTCTCCGGCTCGCCGGTCGCGGCGGCGTCTATGGTGACTCCCTTCGTCGCCTCTCCCGGCTCGCAGCGCGTGAGCCGGTCCAACCCCGGCGCGTGGCTGATTTTACGACCGGAGGACGGCACGTGGAAGCCGTGGGGCCGACTCGAGACGTGGCTGGAGCGCGGCGGCTCCGACACCGTCGGGTACAAGTTCGAGCTGCTCAGCACGATTCTGGCCAACTCCACCGTCAGCGCGTCGAACGGCGGGAAGTTCACGATCGACTTGACGTCGAGTCTGACGCCGGTGAACAGCCCGCACAGCAGCTTCGGGTCAGGGTCGGGTTCGTCGAGGCCCGGGTCGGGGTCCGGGTCGGACTTCGGGTTCGGGTTGATACCTCAGCTGCTGCAGAGAGGGTTTGTGATGTCGTCGACGGTGGAGGGAATCGGGAAGTGTAGCAAGCCGGAGGTGGAGGTCGGAGTGCAGCACGTGACATGCACGGAGGACGCGGCCGCTTACGTGGCGTTGGCGGCAGCGATGGATCTGAGCATGGATGCTTGCCGGCCGTTTTCACATAAGCTCCGGAAGGAGCTGAGGCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1005

Protein Analysis

442

Amino Acids

47.3

Weight (kDa)

9.37

Isoelectric Point (pI)

49.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1005 PF06219 1 - 441 3.9e-187 Protein of unknown function (DUF1005)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016745)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g03010
malus_domestica MD05G1108400.v1.1
prunus_persica Prupe.8G152100_v2.0.a1
pyrus_communis pycom05g10440
rosa_chinensis RchiOBHm_Chr6g0247801
rosa_laevigata RLG00000015178
rosa_roxburghii Rroxscaffold_180G00433230 Rroxscaffold_7G00213640
rosa_rugosa Rorug05G0529000
rosa_samantha Rh6AG043800 Rh6BG038600 Rh6CG037300 Rh6DG034400
rosa_wichuraiana Rw6G003800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 338
AatII GACGTC 1 cut(s) 1019
Acc36I ACCTGC 1 cut(s) 338
AccB1I GGYRCC 2 cut(s) 323, 656
AccBSI CCGCTC 3 cut(s) 188, 219, 376
AccI GTMKAC 2 cut(s) 414, 1157
AccII CGCG 9 cut(s) 321, 363, 713, 770, 819, 842, 912, 983, 1235
AccIII TCCGGA 2 cut(s) 458, 1308
AclWI GGATC 7 cut(s) 12, 19, 32, 456, 469, 736, 1275
AcoI YGGCCR 5 cut(s) 313, 358, 963, 1236, 1289
AcsI RAATTY 1 cut(s) 602
AcvI CACGTG 2 cut(s) 873, 1216
AcyI GRCGYC 4 cut(s) 324, 776, 1016, 1028
AfaI GTAC 2 cut(s) 21, 935
AfiI CCNNNNNNNGG 6 cut(s) 568, 686, 843, 866, 1088, 1089
AgsI TTSAA 1 cut(s) 523
AhdI GACNNNNNGTC 2 cut(s) 1015, 1020
AjiI CACGTC 1 cut(s) 900
AjnI CCWGG 2 cut(s) 561, 567
AjuI GAANNNNNNNTTGG 2 cut(s) 59, 91
AleI CACNNNNGTG 1 cut(s) 395
AloI GAACNNNNNNTCC 2 cut(s) 1094, 1126
AluBI AGCT 8 cut(s) 124, 352, 385, 946, 1053, 1129, 1306, 1318
AluI AGCT 8 cut(s) 124, 352, 385, 946, 1053, 1129, 1306, 1318
Alw21I GWGCWC 1 cut(s) 387
Alw26I GTCTC 3 cut(s) 30, 67, 890
AlwI GGATC 7 cut(s) 12, 19, 32, 456, 469, 736, 1275
AlwNI CAGNNNCTG 1 cut(s) 1132
Ama87I CYCGRG 4 cut(s) 508, 539, 893, 1082
Aor13HI TCCGGA 2 cut(s) 458, 1308
AoxI GGCC 9 cut(s) 313, 334, 358, 495, 886, 963, 1079, 1236, 1289
ApeKI GCWGC 8 cut(s) 583, 814, 946, 1050, 1129, 1132, 1210, 1259
ApoI RAATTY 1 cut(s) 602
ArsI GACNNNNNNTTYG 4 cut(s) 497, 529, 1094, 1126
AspLEI GCGC 7 cut(s) 285, 326, 713, 819, 842, 912, 983
AspS9I GGNCC 7 cut(s) 456, 495, 565, 828, 886, 1080, 1092
AsuC2I CCSGG 8 cut(s) 454, 494, 654, 807, 837, 1083, 1084, 1096
AsuHPI GGTGA 4 cut(s) 118, 358, 796, 1045
AvaI CYCGRG 4 cut(s) 508, 539, 893, 1082
AvaII GGWCC 4 cut(s) 456, 565, 828, 1092
AxyI CCTNAGG 1 cut(s) 552
BaeGI GKGCMC 2 cut(s) 14, 659
BalI TGGCCA 1 cut(s) 965
BamHI GGATCC 3 cut(s) 4, 24, 461
BanI GGYRCC 2 cut(s) 323, 656
BanII GRGCYC 1 cut(s) 387
BbrPI CACGTG 2 cut(s) 873, 1216
BbsI GAAGAC 1 cut(s) 583
Bbv12I GWGCWC 1 cut(s) 387
BbvCI CCTCAGC 2 cut(s) 1125, 1319
BbvI GCAGC 8 cut(s) 595, 826, 933, 1062, 1116, 1119, 1222, 1271
BccI CCATC 3 cut(s) 305, 311, 1258
BceAI ACGGC 8 cut(s) 137, 380, 439, 664, 865, 883, 1006, 1276
BciT130I CCWGG 2 cut(s) 563, 569
BcnI CCSGG 8 cut(s) 454, 494, 654, 807, 837, 1083, 1084, 1096
BcoDI GTCTC 3 cut(s) 30, 67, 890
BfmI CTRYAG 1 cut(s) 1133
BfoI RGCGCY 2 cut(s) 286, 327
BfuAI ACCTGC 1 cut(s) 338
BglI GCCNNNNNGGC 1 cut(s) 321
BlpI GCTNAGC 1 cut(s) 950
Bme18I GGWCC 4 cut(s) 456, 565, 828, 1092
BmeRI GACNNNNNGTC 2 cut(s) 1015, 1020
BmeT110I CYCGRG 4 cut(s) 508, 539, 893, 1082
BmgBI CACGTC 1 cut(s) 900
BmgT120I GGNCC 7 cut(s) 456, 495, 565, 828, 886, 1080, 1092
BmiI GGNNCC 9 cut(s) 6, 26, 325, 457, 463, 658, 887, 919, 1093
BmsI GCATC 1 cut(s) 1270
BpiI GAAGAC 1 cut(s) 583
BpmI CTGGAG 1 cut(s) 926
Bpu10I CCTNAGC 2 cut(s) 1125, 1319
Bpu1102I GCTNAGC 1 cut(s) 950
BpuEI CTTGAG 1 cut(s) 32
BpuMI CCSGG 8 cut(s) 454, 494, 654, 807, 837, 1083, 1084, 1096
BsaAI YACGTR 3 cut(s) 873, 1216, 1246
BsaBI GATNNNNATC 2 cut(s) 29, 434
BsaHI GRCGYC 4 cut(s) 324, 776, 1016, 1028
BsaJI CCNNGG 7 cut(s) 319, 355, 568, 662, 835, 881, 1082
BsaWI WCCGGW 3 cut(s) 458, 859, 1308
Bsc4I CCNNNNNNNGG 6 cut(s) 568, 686, 843, 866, 1088, 1089
Bse118I RCCGGY 6 cut(s) 311, 586, 763, 825, 1030, 1287
Bse1I ACTGG 1 cut(s) 142
Bse21I CCTNAGG 1 cut(s) 552
Bse8I GATNNNNATC 2 cut(s) 29, 434
BseAI TCCGGA 2 cut(s) 458, 1308
BseBI CCWGG 2 cut(s) 563, 569
BseDI CCNNGG 7 cut(s) 319, 355, 568, 662, 835, 881, 1082
BseGI GGATG 2 cut(s) 162, 1285
BseJI GATNNNNATC 2 cut(s) 29, 434
BseLI CCNNNNNNNGG 6 cut(s) 568, 686, 843, 866, 1088, 1089
BseMII CTCAG 7 cut(s) 203, 482, 566, 964, 1139, 1262, 1310
BseNI ACTGG 1 cut(s) 142
BseRI GAGGAG 2 cut(s) 88, 344
BseSI GKGCMC 2 cut(s) 14, 659
BseX3I CGGCCG 4 cut(s) 313, 358, 1236, 1289
BseXI GCAGC 8 cut(s) 595, 826, 933, 1062, 1116, 1119, 1222, 1271
BseYI CCCAGC 1 cut(s) 287
BsgI GTGCAG 1 cut(s) 1229
Bsh1236I CGCG 9 cut(s) 321, 363, 713, 770, 819, 842, 912, 983, 1235
Bsh1285I CGRYCG 7 cut(s) 316, 361, 768, 860, 1008, 1239, 1292
BshFI GGCC 9 cut(s) 315, 336, 360, 497, 888, 965, 1081, 1238, 1291
BshNI GGYRCC 2 cut(s) 323, 656
BsiEI CGRYCG 7 cut(s) 316, 361, 768, 860, 1008, 1239, 1292
BsiHKAI GWGCWC 1 cut(s) 387
BsiHKCI CYCGRG 4 cut(s) 508, 539, 893, 1082
BsiWI CGTACG 1 cut(s) 19
BslFI GGGAC 3 cut(s) 140, 356, 385
BslI CCNNNNNNNGG 6 cut(s) 568, 686, 843, 866, 1088, 1089
BsmAI GTCTC 3 cut(s) 30, 67, 890
BsmBI CGTCTC 2 cut(s) 67, 890
BsmFI GGGAC 3 cut(s) 140, 356, 385
BsnI GGCC 9 cut(s) 315, 336, 360, 497, 888, 965, 1081, 1238, 1291
BsoBI CYCGRG 4 cut(s) 508, 539, 893, 1082
Bsp1286I GDGCHC 3 cut(s) 14, 387, 659
Bsp13I TCCGGA 2 cut(s) 458, 1308
Bsp143I GATC 6 cut(s) 4, 24, 461, 741, 1005, 1267
Bsp1720I GCTNAGC 1 cut(s) 950
BspANI GGCC 9 cut(s) 315, 336, 360, 497, 888, 965, 1081, 1238, 1291
BspCNI CTCAG 7 cut(s) 202, 481, 565, 963, 1138, 1263, 1311
BspEI TCCGGA 2 cut(s) 458, 1308
BspFNI CGCG 9 cut(s) 321, 363, 713, 770, 819, 842, 912, 983, 1235
BspLI GGNNCC 9 cut(s) 6, 26, 325, 457, 463, 658, 887, 919, 1093
BspMAI CTGCAG 1 cut(s) 1137
BspMI ACCTGC 1 cut(s) 338
BspPI GGATC 7 cut(s) 12, 19, 32, 456, 469, 736, 1275
BspT107I GGYRCC 2 cut(s) 323, 656
BsrBI CCGCTC 3 cut(s) 188, 219, 376
BsrFI RCCGGY 6 cut(s) 311, 586, 763, 825, 1030, 1287
BsrI ACTGG 1 cut(s) 142
BssAI RCCGGY 6 cut(s) 311, 586, 763, 825, 1030, 1287
BssECI CCNNGG 7 cut(s) 319, 355, 568, 662, 835, 881, 1082
BssMI GATC 6 cut(s) 4, 24, 461, 741, 1005, 1267
BssNI GRCGYC 4 cut(s) 324, 776, 1016, 1028
BssT1I CCWWGG 1 cut(s) 662
Bst2UI CCWGG 2 cut(s) 563, 569
Bst4CI ACNGT 7 cut(s) 61, 85, 370, 639, 928, 976, 1162
BstACI GRCGYC 4 cut(s) 324, 776, 1016, 1028
BstBAI YACGTR 3 cut(s) 873, 1216, 1246
BstC8I GCNNGC 9 cut(s) 217, 238, 378, 761, 812, 1043, 1187, 1285, 1289
BstDEI CTNAG 7 cut(s) 189, 468, 552, 950, 1125, 1271, 1319
BstDSI CCRYGG 2 cut(s) 319, 881
BstF5I GGATG 2 cut(s) 162, 1285
BstFNI CGCG 9 cut(s) 321, 363, 713, 770, 819, 842, 912, 983, 1235
BstH2I RGCGCY 2 cut(s) 286, 327
BstHHI GCGC 7 cut(s) 285, 326, 713, 819, 842, 912, 983
BstKTI GATC 6 cut(s) 7, 27, 464, 744, 1008, 1270
BstMAI GTCTC 3 cut(s) 30, 67, 890
BstMBI GATC 6 cut(s) 4, 24, 461, 741, 1005, 1267
BstMCI CGRYCG 7 cut(s) 316, 361, 768, 860, 1008, 1239, 1292
BstMWI GCNNNNNNNGC 8 cut(s) 185, 321, 330, 382, 816, 1047, 1247, 1256
BstNI CCWGG 2 cut(s) 563, 569
BstNSI RCATGY 1 cut(s) 1224
BstSFI CTRYAG 1 cut(s) 1133
BstSLI GKGCMC 2 cut(s) 14, 659
BstUI CGCG 9 cut(s) 321, 363, 713, 770, 819, 842, 912, 983, 1235
BstV1I GCAGC 8 cut(s) 595, 826, 933, 1062, 1116, 1119, 1222, 1271
BstV2I GAAGAC 1 cut(s) 583
BstX2I RGATCY 4 cut(s) 4, 24, 461, 1267
BstXI CCANNNNNNTGG 1 cut(s) 669
BstYI RGATCY 4 cut(s) 4, 24, 461, 1267
BstZI CGGCCG 4 cut(s) 313, 358, 1236, 1289
Bsu36I CCTNAGG 1 cut(s) 552
BsuRI GGCC 9 cut(s) 315, 336, 360, 497, 888, 965, 1081, 1238, 1291
BtgI CCRYGG 2 cut(s) 319, 881
BtgZI GCGATG 1 cut(s) 1277
BtrI CACGTC 1 cut(s) 900
BtsCI GGATG 2 cut(s) 162, 1285
BveI ACCTGC 1 cut(s) 338
Cac8I GCNNGC 9 cut(s) 217, 238, 378, 761, 812, 1043, 1187, 1285, 1289
CaiI CAGNNNCTG 1 cut(s) 1132
CciNI GCGGCCGC 1 cut(s) 1236
CfoI GCGC 7 cut(s) 285, 326, 713, 819, 842, 912, 983
Cfr10I RCCGGY 6 cut(s) 311, 586, 763, 825, 1030, 1287
Cfr13I GGNCC 7 cut(s) 456, 495, 565, 828, 886, 1080, 1092
Cfr42I CCGCGG 1 cut(s) 322
Cfr9I CCCGGG 1 cut(s) 1082
CseI GACGC 6 cut(s) 352, 478, 765, 972, 1036, 1241
Csp6I GTAC 2 cut(s) 20, 934
CviAII CATG 2 cut(s) 1221, 1276
CviQI GTAC 2 cut(s) 20, 934
DdeI CTNAG 7 cut(s) 189, 468, 552, 950, 1125, 1271, 1319
DinI GGCGCC 1 cut(s) 325
DpnI GATC 6 cut(s) 6, 26, 463, 743, 1007, 1269
DpnII GATC 6 cut(s) 4, 24, 461, 741, 1005, 1267
DriI GACNNNNNGTC 2 cut(s) 1015, 1020
EaeI YGGCCR 5 cut(s) 313, 358, 963, 1236, 1289
EagI CGGCCG 4 cut(s) 313, 358, 1236, 1289
Eam1105I GACNNNNNGTC 2 cut(s) 1015, 1020
EciI GGCGGA 5 cut(s) 139, 166, 172, 196, 334
Ecl136II GAGCTC 1 cut(s) 385
EclXI CGGCCG 4 cut(s) 313, 358, 1236, 1289
Eco130I CCWWGG 1 cut(s) 662
Eco24I GRGCYC 1 cut(s) 387
Eco47I GGWCC 4 cut(s) 456, 565, 828, 1092
Eco52I CGGCCG 4 cut(s) 313, 358, 1236, 1289
Eco53kI GAGCTC 1 cut(s) 385
Eco72I CACGTG 2 cut(s) 873, 1216
Eco81I CCTNAGG 1 cut(s) 552
Eco88I CYCGRG 4 cut(s) 508, 539, 893, 1082
EcoICRI GAGCTC 1 cut(s) 385
EcoRII CCWGG 2 cut(s) 561, 567
EcoT14I CCWWGG 1 cut(s) 662
EcoT38I GRGCYC 1 cut(s) 387
EgeI GGCGCC 1 cut(s) 325
EheI GGCGCC 1 cut(s) 325
ErhI CCWWGG 1 cut(s) 662
Esp3I CGTCTC 2 cut(s) 67, 890
FaeI CATG 2 cut(s) 1224, 1279
FaiI YATR 6 cut(s) 629, 686, 782, 1222, 1277, 1302
FaqI GGGAC 3 cut(s) 140, 356, 385
FatI CATG 2 cut(s) 1220, 1275
FauI CCCGC 5 cut(s) 224, 381, 410, 986, 1050
FblI GTMKAC 2 cut(s) 414, 1157
FokI GGATG 2 cut(s) 149, 1292
FriOI GRGCYC 1 cut(s) 387
GlaI GCGC 7 cut(s) 284, 325, 712, 818, 841, 911, 982
GsaI CCCAGC 1 cut(s) 291
GsuI CTGGAG 1 cut(s) 926
HaeII RGCGCY 2 cut(s) 286, 327
HaeIII GGCC 9 cut(s) 315, 336, 360, 497, 888, 965, 1081, 1238, 1291
HgaI GACGC 6 cut(s) 352, 478, 765, 972, 1036, 1241
HhaI GCGC 7 cut(s) 285, 326, 713, 819, 842, 912, 983
Hin1I GRCGYC 4 cut(s) 324, 776, 1016, 1028
Hin1II CATG 2 cut(s) 1224, 1279
Hin6I GCGC 7 cut(s) 283, 324, 711, 817, 840, 910, 981
HinP1I GCGC 7 cut(s) 283, 324, 711, 817, 840, 910, 981
HincII GTYRAC 1 cut(s) 1158
HindII GTYRAC 1 cut(s) 1158
HinfI GANTC 8 cut(s) 173, 435, 513, 787, 891, 958, 1021, 1170
HphI GGTGA 4 cut(s) 118, 358, 796, 1045
Hpy166II GTNNAC 5 cut(s) 88, 415, 1002, 1036, 1158
Hpy188III TCNNGA 5 cut(s) 459, 895, 1003, 1174, 1309
Hpy8I GTNNAC 5 cut(s) 88, 415, 1002, 1036, 1158
HpyAV CCTTC 3 cut(s) 102, 802, 1306
HpyCH4III ACNGT 7 cut(s) 61, 85, 370, 639, 928, 976, 1162
HpyCH4IV ACGT 5 cut(s) 872, 899, 1016, 1215, 1245
HpyCH4V TGCA 6 cut(s) 114, 600, 631, 1135, 1210, 1224
HpyF10VI GCNNNNNNNGC 8 cut(s) 185, 321, 330, 382, 816, 1047, 1247, 1256
HpyF3I CTNAG 7 cut(s) 189, 468, 552, 950, 1125, 1271, 1319
HpySE526I ACGT 5 cut(s) 872, 899, 1016, 1215, 1245
Hsp92I GRCGYC 4 cut(s) 324, 776, 1016, 1028
Hsp92II CATG 2 cut(s) 1224, 1279
HspAI GCGC 7 cut(s) 283, 324, 711, 817, 840, 910, 981
KasI GGCGCC 1 cut(s) 323
Kpn2I TCCGGA 2 cut(s) 458, 1308
KroI GCCGGC 1 cut(s) 1287
KroNI GCCGGC 1 cut(s) 1289
KspI CCGCGG 1 cut(s) 322
Kzo9I GATC 6 cut(s) 4, 24, 461, 741, 1005, 1267
LmnI GCTCC 7 cut(s) 224, 357, 703, 907, 923, 1311, 1315
Lsp1109I GCAGC 8 cut(s) 595, 826, 933, 1062, 1116, 1119, 1222, 1271
LweI GCATC 1 cut(s) 1270
MaeII ACGT 5 cut(s) 872, 899, 1016, 1215, 1245
MaeIII GTNAC 3 cut(s) 364, 784, 1216
MalI GATC 6 cut(s) 6, 26, 463, 743, 1007, 1269
MbiI CCGCTC 3 cut(s) 188, 219, 376
MboI GATC 6 cut(s) 4, 24, 461, 741, 1005, 1267
MboII GAAGA 1 cut(s) 583
MflI RGATCY 4 cut(s) 4, 24, 461, 1267
MhlI GDGCHC 3 cut(s) 14, 387, 659
MlsI TGGCCA 1 cut(s) 965
MluCI AATT 3 cut(s) 476, 602, 667
MluNI TGGCCA 1 cut(s) 965
Mly113I GGCGCC 1 cut(s) 324
MlyI GAGTC 4 cut(s) 167, 781, 885, 1030
MmeI TCCRAC 4 cut(s) 855, 945, 1080, 1183
Mox20I TGGCCA 1 cut(s) 965
MroI TCCGGA 2 cut(s) 458, 1308
MroNI GCCGGC 1 cut(s) 1287
MscI TGGCCA 1 cut(s) 965
MseI TTAA 2 cut(s) 243, 485
MslI CAYNNNNRTG 1 cut(s) 395
Msp20I TGGCCA 1 cut(s) 965
MspA1I CMGCKG 2 cut(s) 321, 1129
MvaI CCWGG 2 cut(s) 563, 569
MvnI CGCG 9 cut(s) 321, 363, 713, 770, 819, 842, 912, 983, 1235
MwoI GCNNNNNNNGC 8 cut(s) 185, 321, 330, 382, 816, 1047, 1247, 1256
NaeI GCCGGC 1 cut(s) 1289
NarI GGCGCC 1 cut(s) 324
NciI CCSGG 8 cut(s) 454, 494, 654, 807, 837, 1083, 1084, 1096
NdeII GATC 6 cut(s) 4, 24, 461, 741, 1005, 1267
NgoMIV GCCGGC 1 cut(s) 1287
NlaIII CATG 2 cut(s) 1224, 1279
NlaIV GGNNCC 9 cut(s) 6, 26, 325, 457, 463, 658, 887, 919, 1093
NmeAIII GCCGAG 2 cut(s) 336, 406
NmuCI GTSAC 3 cut(s) 364, 784, 1216
NotI GCGGCCGC 1 cut(s) 1236
NspI RCATGY 1 cut(s) 1224
OliI CACNNNNGTG 1 cut(s) 395
PaeR7I CTCGAG 1 cut(s) 893
PaqCI CACCTGC 1 cut(s) 338
PcsI WCGNNNNNNNCGW 3 cut(s) 537, 878, 1073
PdiI GCCGGC 1 cut(s) 1289
PfeI GAWTC 4 cut(s) 435, 513, 958, 1170
Pfl23II CGTACG 1 cut(s) 19
PflFI GACNNNGTC 1 cut(s) 926
Ple19I CGATCG 1 cut(s) 1008
PleI GAGTC 4 cut(s) 167, 781, 885, 1029
PluTI GGCGCC 1 cut(s) 327
PmaCI CACGTG 2 cut(s) 873, 1216
PmlI CACGTG 2 cut(s) 873, 1216
PpsI GAGTC 4 cut(s) 167, 781, 885, 1029
Ppu21I YACGTR 3 cut(s) 873, 1216, 1246
Psp124BI GAGCTC 1 cut(s) 387
Psp6I CCWGG 2 cut(s) 561, 567
PspCI CACGTG 2 cut(s) 873, 1216
PspFI CCCAGC 1 cut(s) 287
PspGI CCWGG 2 cut(s) 561, 567
PspLI CGTACG 1 cut(s) 19
PspN4I GGNNCC 9 cut(s) 6, 26, 325, 457, 463, 658, 887, 919, 1093
PspPI GGNCC 7 cut(s) 456, 495, 565, 828, 886, 1080, 1092
PstI CTGCAG 1 cut(s) 1137
PstNI CAGNNNCTG 1 cut(s) 1132
PsuI RGATCY 4 cut(s) 4, 24, 461, 1267
PsyI GACNNNGTC 1 cut(s) 926
PvuI CGATCG 1 cut(s) 1008
PvuII CAGCTG 1 cut(s) 1129
RsaI GTAC 2 cut(s) 21, 935
RsaNI GTAC 2 cut(s) 20, 934
RseI CAYNNNNRTG 1 cut(s) 395
SacI GAGCTC 1 cut(s) 387
SacII CCGCGG 1 cut(s) 322
SalI GTCGAC 1 cut(s) 1156
SaqAI TTAA 2 cut(s) 243, 485
Sau3AI GATC 6 cut(s) 4, 24, 461, 741, 1005, 1267
Sau96I GGNCC 7 cut(s) 456, 495, 565, 828, 886, 1080, 1092
SchI GAGTC 4 cut(s) 167, 781, 885, 1030
SduI GDGCHC 3 cut(s) 14, 387, 659
SfaNI GCATC 1 cut(s) 1270
SfcI CTRYAG 1 cut(s) 1133
SfoI GGCGCC 1 cut(s) 325
Sfr274I CTCGAG 1 cut(s) 893
Sfr303I CCGCGG 1 cut(s) 322
SgrAI CRCCGGYG 1 cut(s) 1030
SgrBI CCGCGG 1 cut(s) 322
SgrDI CGTCGACG 1 cut(s) 1156
SinI GGWCC 4 cut(s) 456, 565, 828, 1092
SlaI CTCGAG 1 cut(s) 893
SmaI CCCGGG 1 cut(s) 1084
SmiMI CAYNNNNRTG 1 cut(s) 395
SmlI CTYRAG 2 cut(s) 47, 893
SmoI CTYRAG 2 cut(s) 47, 893
Sse9I AATT 3 cut(s) 476, 602, 667
SspDI GGCGCC 1 cut(s) 323
SstI GAGCTC 1 cut(s) 387
StyI CCWWGG 1 cut(s) 662
TaaI ACNGT 7 cut(s) 61, 85, 370, 639, 928, 976, 1162
TaiI ACGT 5 cut(s) 875, 902, 1019, 1218, 1248
TasI AATT 3 cut(s) 476, 602, 667
TfiI GAWTC 4 cut(s) 435, 513, 958, 1170
Tru1I TTAA 2 cut(s) 243, 485
Tru9I TTAA 2 cut(s) 243, 485
TseFI GTSAC 3 cut(s) 364, 784, 1216
TseI GCWGC 8 cut(s) 583, 814, 946, 1050, 1129, 1132, 1210, 1259
Tsp45I GTSAC 3 cut(s) 364, 784, 1216
TspGWI ACGGA 3 cut(s) 37, 546, 1241
TspMI CCCGGG 1 cut(s) 1082
Tth111I GACNNNGTC 1 cut(s) 926
VpaK11BI GGWCC 4 cut(s) 456, 565, 828, 1092
XapI RAATTY 1 cut(s) 602
XceI RCATGY 1 cut(s) 1224
XhoI CTCGAG 1 cut(s) 893
XmaI CCCGGG 1 cut(s) 1082
XmiI GTMKAC 2 cut(s) 414, 1157
ZraI GACGTC 1 cut(s) 1017
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.