Rw6G003800

Protein of unknown function (DUF1005)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0016745
Physical Location & Seq
Reverse (-)
6195831 .. 6197756
1926 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G003800.1

Sequence Viewer

Length: 1332 bp
ATGGATCCGTGCCCGTTCGTACGGATCCTCATCGGAGACTTGACCCTCAAGTTTCCCAGCGTCTCCAAACCCTCCTTCTCCACCGTCCACCCTTCCTCCTCTCCCTGCTTCTGCAAAATCAAGCTCACCAACTTCCCCCACCAGTTCTCCGCCGTCCCCCTCATCCTCGACGACTCCGCCTCCGCCTCTCAGACCACCACCACCACCACCTCCGCCGCCCGCTCCCACTCCCTCAACGCCTGCTTCAACCTCACCAAGCCCCAAATCGAAACCCTCGCCTCCAAGCGCCCCAGCCTCTCCATCTCGATCTACACCGGCCGCCGCGGCGCCTCCTGCGGCCTCAACTCCGCCAAGCTCCTCGGCCGCGTCACCGTCCCGCTCGCCGAGCTCTCCACCGCCGTGTCCCGCCCCGTCGTCTACCAGAACGGCTGGATTGGAATCGGTGGCAAGAAGTCCGGGTCCTCTCAGTCGCAGTTCTTTTTAAGCGTCCGGGCCGAACCCGACCCGAGATTCGTGTTCAAGTTCGACGGAGAACCCGAGTGTAGCCCCCAGGTTTTCCAGGTCCAGGGAAATGTAAAGCAGCCGGTCTTCACTTGCAAATTTGGCTTCAGAAACGCCTCCGATTTGCAATCACGGTCAATGTCGGAGCCGGGTACCCCAAGGAATTGGTTAGTGCCGTTTATGGGAGGCAGCCAAAAGGAGCAGAGCGCGAAAGAGAGGAAAGGCTGGTCGTTGACGATCCATGACCTCTCCGGCTCGCCGGTCGCGGCGGCGTCTATGGTGACTCCCTTCGTCGCCTCCCCCGGCTCGCAGCGCGTGAGCCGGTCCAACCCCGGCGCGTGGCTGATTCTGAGACCGGAGGACGGCACGTGGAAGCCGTGGGGCCGACTCGAGACGTGGCTGGAGCGCGGCGGCTCCGACACCGTCGGGTACAAGTTCGAGCTGCTCAGCACGATTCTGGCCAACTCCACCGTCAGCGCGTCGAACGGCGGGAAGTTCACGATCGACTTGACGTCGAGTCTGACGCCGGTGAACAGTCCGCACAGCAGCTTCGACTTCGGGTCCGGGTCGGGTTCGTCGAGGCCCGGGTCGGGGTCCGGGTCGGACTTCGGGTTCGGGTTGATACCTCAGCTGCTGCAGAGAGGGTTTGTGATGTCGTCGACGGTGGAGGGGATCGGGAAGTGTAGCAAGCCGGAGGTGGAGGTCGGAGTGCAGCACGTGACATGCACGGAGGACGCGGCCGCTTACGTGGCGTTGGCGGCGGCGATGGATCTGAGCATGGATGCTTGCCGGCCGTTTTCACATAAGCTCCGGAAGGAGCTGAGGCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1005

Protein Analysis

443

Amino Acids

47.48

Weight (kDa)

9.3

Isoelectric Point (pI)

52.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1005 PF06219 1 - 442 3.8e-186 Protein of unknown function (DUF1005)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016745)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g03010
malus_domestica MD05G1108400.v1.1
prunus_persica Prupe.8G152100_v2.0.a1
pyrus_communis pycom05g10440
rosa_chinensis RchiOBHm_Chr6g0247801
rosa_laevigata RLG00000015178
rosa_roxburghii Rroxscaffold_180G00433230 Rroxscaffold_7G00213640
rosa_rugosa Rorug05G0529000
rosa_samantha Rh6AG043800 Rh6BG038600 Rh6CG037300 Rh6DG034400
rosa_wichuraiana Rw6G003800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1016
Acc65I GGTACC 1 cut(s) 653
AccB1I GGYRCC 2 cut(s) 326, 653
AccBSI CCGCTC 2 cut(s) 222, 379
AccI GTMKAC 2 cut(s) 417, 1160
AccII CGCG 9 cut(s) 324, 366, 710, 767, 816, 839, 909, 980, 1238
AccIII TCCGGA 1 cut(s) 1311
AclWI GGATC 6 cut(s) 12, 19, 32, 733, 1181, 1278
AcoI YGGCCR 5 cut(s) 316, 361, 960, 1239, 1292
AcsI RAATTY 1 cut(s) 599
AcuI CTGAAG 1 cut(s) 592
AcvI CACGTG 2 cut(s) 870, 1219
AcyI GRCGYC 4 cut(s) 327, 773, 1013, 1025
AfaI GTAC 3 cut(s) 21, 655, 932
AfiI CCNNNNNNNGG 6 cut(s) 565, 683, 840, 863, 1091, 1092
AgsI TTSAA 2 cut(s) 247, 520
AhdI GACNNNNNGTC 3 cut(s) 1012, 1017, 1060
AjiI CACGTC 1 cut(s) 897
AjnI CCWGG 3 cut(s) 549, 558, 564
AjuI GAANNNNNNNTTGG 2 cut(s) 59, 91
AleI CACNNNNGTG 1 cut(s) 398
AloI GAACNNNNNNTCC 2 cut(s) 1097, 1129
AluBI AGCT 8 cut(s) 124, 355, 388, 943, 1050, 1132, 1309, 1321
AluI AGCT 8 cut(s) 124, 355, 388, 943, 1050, 1132, 1309, 1321
Alw21I GWGCWC 1 cut(s) 390
Alw26I GTCTC 4 cut(s) 30, 67, 847, 887
AlwI GGATC 6 cut(s) 12, 19, 32, 733, 1181, 1278
AlwNI CAGNNNCTG 1 cut(s) 1135
Ama87I CYCGRG 4 cut(s) 505, 536, 890, 1085
Aor13HI TCCGGA 1 cut(s) 1311
AoxI GGCC 9 cut(s) 316, 337, 361, 492, 883, 960, 1082, 1239, 1292
ApeKI GCWGC 8 cut(s) 580, 690, 811, 943, 1047, 1132, 1135, 1213
ApoI RAATTY 1 cut(s) 599
ArsI GACNNNNNNTTYG 4 cut(s) 494, 526, 1097, 1129
Asp718I GGTACC 1 cut(s) 653
AspLEI GCGC 7 cut(s) 288, 329, 710, 816, 839, 909, 980
AspS9I GGNCC 8 cut(s) 459, 492, 562, 825, 883, 1062, 1083, 1095
AsuC2I CCSGG 9 cut(s) 457, 491, 651, 804, 834, 1066, 1086, 1087, 1099
AsuHPI GGTGA 5 cut(s) 118, 244, 361, 793, 1042
AvaI CYCGRG 4 cut(s) 505, 536, 890, 1085
AvaII GGWCC 5 cut(s) 459, 562, 825, 1062, 1095
BaeGI GKGCMC 1 cut(s) 14
BalI TGGCCA 1 cut(s) 962
BamHI GGATCC 2 cut(s) 4, 24
BanI GGYRCC 2 cut(s) 326, 653
BanII GRGCYC 1 cut(s) 390
BbrPI CACGTG 2 cut(s) 870, 1219
BbsI GAAGAC 1 cut(s) 580
Bbv12I GWGCWC 1 cut(s) 390
BbvCI CCTCAGC 2 cut(s) 1128, 1322
BbvI GCAGC 8 cut(s) 592, 702, 823, 930, 1059, 1119, 1122, 1225
BccI CCATC 2 cut(s) 308, 1261
BceAI ACGGC 8 cut(s) 137, 383, 442, 661, 862, 880, 1003, 1279
BciT130I CCWGG 3 cut(s) 551, 560, 566
BcnI CCSGG 9 cut(s) 457, 491, 651, 804, 834, 1066, 1086, 1087, 1099
BcoDI GTCTC 4 cut(s) 30, 67, 847, 887
BfmI CTRYAG 1 cut(s) 1136
BfoI RGCGCY 2 cut(s) 289, 330
BglI GCCNNNNNGGC 1 cut(s) 324
BlpI GCTNAGC 1 cut(s) 947
Bme18I GGWCC 5 cut(s) 459, 562, 825, 1062, 1095
BmeRI GACNNNNNGTC 3 cut(s) 1012, 1017, 1060
BmeT110I CYCGRG 4 cut(s) 505, 536, 890, 1085
BmgBI CACGTC 1 cut(s) 897
BmgT120I GGNCC 8 cut(s) 459, 492, 562, 825, 883, 1062, 1083, 1095
BmsI GCATC 1 cut(s) 1273
BpiI GAAGAC 1 cut(s) 580
BpmI CTGGAG 1 cut(s) 923
Bpu10I CCTNAGC 2 cut(s) 1128, 1322
Bpu1102I GCTNAGC 1 cut(s) 947
BpuEI CTTGAG 1 cut(s) 32
BpuMI CCSGG 9 cut(s) 457, 491, 651, 804, 834, 1066, 1086, 1087, 1099
BsaAI YACGTR 3 cut(s) 870, 1219, 1249
BsaBI GATNNNNATC 2 cut(s) 29, 437
BsaHI GRCGYC 4 cut(s) 327, 773, 1013, 1025
BsaI GGTCTC 1 cut(s) 847
BsaJI CCNNGG 9 cut(s) 322, 358, 549, 565, 659, 802, 832, 878, 1085
BsaWI WCCGGW 2 cut(s) 856, 1311
BsaXI ACNNNNNCTCC 8 cut(s) 80, 110, 131, 161, 164, 194, 1293, 1323
Bsc4I CCNNNNNNNGG 6 cut(s) 565, 683, 840, 863, 1091, 1092
Bse118I RCCGGY 6 cut(s) 314, 583, 760, 822, 1027, 1290
Bse1I ACTGG 1 cut(s) 142
Bse8I GATNNNNATC 2 cut(s) 29, 437
BseAI TCCGGA 1 cut(s) 1311
BseBI CCWGG 3 cut(s) 551, 560, 566
BseDI CCNNGG 9 cut(s) 322, 358, 549, 565, 659, 802, 832, 878, 1085
BseGI GGATG 2 cut(s) 162, 1288
BseJI GATNNNNATC 2 cut(s) 29, 437
BseLI CCNNNNNNNGG 6 cut(s) 565, 683, 840, 863, 1091, 1092
BseMII CTCAG 7 cut(s) 203, 479, 842, 961, 1142, 1265, 1313
BseNI ACTGG 1 cut(s) 142
BseRI GAGGAG 2 cut(s) 88, 347
BseSI GKGCMC 1 cut(s) 14
BseX3I CGGCCG 4 cut(s) 316, 361, 1239, 1292
BseXI GCAGC 8 cut(s) 592, 702, 823, 930, 1059, 1119, 1122, 1225
BseYI CCCAGC 2 cut(s) 56, 290
BsgI GTGCAG 1 cut(s) 1232
Bsh1236I CGCG 9 cut(s) 324, 366, 710, 767, 816, 839, 909, 980, 1238
Bsh1285I CGRYCG 6 cut(s) 319, 364, 765, 1005, 1242, 1295
BshFI GGCC 9 cut(s) 318, 339, 363, 494, 885, 962, 1084, 1241, 1294
BshNI GGYRCC 2 cut(s) 326, 653
BsiEI CGRYCG 6 cut(s) 319, 364, 765, 1005, 1242, 1295
BsiHKAI GWGCWC 1 cut(s) 390
BsiHKCI CYCGRG 4 cut(s) 505, 536, 890, 1085
BsiWI CGTACG 1 cut(s) 19
BslFI GGGAC 3 cut(s) 140, 359, 388
BslI CCNNNNNNNGG 6 cut(s) 565, 683, 840, 863, 1091, 1092
BsmAI GTCTC 4 cut(s) 30, 67, 847, 887
BsmBI CGTCTC 2 cut(s) 67, 887
BsmFI GGGAC 3 cut(s) 140, 359, 388
BsnI GGCC 9 cut(s) 318, 339, 363, 494, 885, 962, 1084, 1241, 1294
Bso31I GGTCTC 1 cut(s) 847
BsoBI CYCGRG 4 cut(s) 505, 536, 890, 1085
Bsp1286I GDGCHC 2 cut(s) 14, 390
Bsp13I TCCGGA 1 cut(s) 1311
Bsp143I GATC 7 cut(s) 4, 24, 306, 738, 1002, 1173, 1270
Bsp1720I GCTNAGC 1 cut(s) 947
BspANI GGCC 9 cut(s) 318, 339, 363, 494, 885, 962, 1084, 1241, 1294
BspCNI CTCAG 7 cut(s) 202, 478, 843, 960, 1141, 1266, 1314
BspEI TCCGGA 1 cut(s) 1311
BspFNI CGCG 9 cut(s) 324, 366, 710, 767, 816, 839, 909, 980, 1238
BspMAI CTGCAG 1 cut(s) 1140
BspPI GGATC 6 cut(s) 12, 19, 32, 733, 1181, 1278
BspT107I GGYRCC 2 cut(s) 326, 653
BspTNI GGTCTC 1 cut(s) 847
BsrBI CCGCTC 2 cut(s) 222, 379
BsrFI RCCGGY 6 cut(s) 314, 583, 760, 822, 1027, 1290
BsrI ACTGG 1 cut(s) 142
BssAI RCCGGY 6 cut(s) 314, 583, 760, 822, 1027, 1290
BssECI CCNNGG 9 cut(s) 322, 358, 549, 565, 659, 802, 832, 878, 1085
BssMI GATC 7 cut(s) 4, 24, 306, 738, 1002, 1173, 1270
BssNI GRCGYC 4 cut(s) 327, 773, 1013, 1025
BssT1I CCWWGG 1 cut(s) 659
Bst2UI CCWGG 3 cut(s) 551, 560, 566
Bst4CI ACNGT 7 cut(s) 85, 373, 636, 925, 973, 1037, 1165
BstACI GRCGYC 4 cut(s) 327, 773, 1013, 1025
BstBAI YACGTR 3 cut(s) 870, 1219, 1249
BstC8I GCNNGC 8 cut(s) 220, 241, 381, 758, 809, 1190, 1288, 1292
BstDEI CTNAG 7 cut(s) 189, 465, 851, 947, 1128, 1274, 1322
BstDSI CCRYGG 2 cut(s) 322, 878
BstF5I GGATG 2 cut(s) 162, 1288
BstFNI CGCG 9 cut(s) 324, 366, 710, 767, 816, 839, 909, 980, 1238
BstH2I RGCGCY 2 cut(s) 289, 330
BstHHI GCGC 7 cut(s) 288, 329, 710, 816, 839, 909, 980
BstKTI GATC 7 cut(s) 7, 27, 309, 741, 1005, 1176, 1273
BstMAI GTCTC 4 cut(s) 30, 67, 847, 887
BstMBI GATC 7 cut(s) 4, 24, 306, 738, 1002, 1173, 1270
BstMCI CGRYCG 6 cut(s) 319, 364, 765, 1005, 1242, 1295
BstMWI GCNNNNNNNGC 7 cut(s) 324, 333, 385, 603, 813, 1250, 1259
BstNI CCWGG 3 cut(s) 551, 560, 566
BstNSI RCATGY 1 cut(s) 1227
BstSFI CTRYAG 1 cut(s) 1136
BstSLI GKGCMC 1 cut(s) 14
BstUI CGCG 9 cut(s) 324, 366, 710, 767, 816, 839, 909, 980, 1238
BstV1I GCAGC 8 cut(s) 592, 702, 823, 930, 1059, 1119, 1122, 1225
BstV2I GAAGAC 1 cut(s) 580
BstX2I RGATCY 3 cut(s) 4, 24, 1270
BstXI CCANNNNNNTGG 1 cut(s) 666
BstYI RGATCY 3 cut(s) 4, 24, 1270
BstZI CGGCCG 4 cut(s) 316, 361, 1239, 1292
BsuRI GGCC 9 cut(s) 318, 339, 363, 494, 885, 962, 1084, 1241, 1294
BtgI CCRYGG 2 cut(s) 322, 878
BtgZI GCGATG 1 cut(s) 1280
BtrI CACGTC 1 cut(s) 897
BtsCI GGATG 2 cut(s) 162, 1288
Cac8I GCNNGC 8 cut(s) 220, 241, 381, 758, 809, 1190, 1288, 1292
CaiI CAGNNNCTG 1 cut(s) 1135
CciNI GCGGCCGC 1 cut(s) 1239
CfoI GCGC 7 cut(s) 288, 329, 710, 816, 839, 909, 980
Cfr10I RCCGGY 6 cut(s) 314, 583, 760, 822, 1027, 1290
Cfr13I GGNCC 8 cut(s) 459, 492, 562, 825, 883, 1062, 1083, 1095
Cfr42I CCGCGG 1 cut(s) 325
Cfr9I CCCGGG 1 cut(s) 1085
CseI GACGC 7 cut(s) 49, 355, 475, 762, 969, 1033, 1244
Csp6I GTAC 3 cut(s) 20, 654, 931
CviAII CATG 3 cut(s) 743, 1224, 1279
CviQI GTAC 3 cut(s) 20, 654, 931
DdeI CTNAG 7 cut(s) 189, 465, 851, 947, 1128, 1274, 1322
DinI GGCGCC 1 cut(s) 328
DpnI GATC 7 cut(s) 6, 26, 308, 740, 1004, 1175, 1272
DpnII GATC 7 cut(s) 4, 24, 306, 738, 1002, 1173, 1270
DriI GACNNNNNGTC 3 cut(s) 1012, 1017, 1060
EaeI YGGCCR 5 cut(s) 316, 361, 960, 1239, 1292
EagI CGGCCG 4 cut(s) 316, 361, 1239, 1292
Eam1105I GACNNNNNGTC 3 cut(s) 1012, 1017, 1060
EciI GGCGGA 5 cut(s) 139, 166, 172, 202, 337
Ecl136II GAGCTC 1 cut(s) 388
EclXI CGGCCG 4 cut(s) 316, 361, 1239, 1292
Eco130I CCWWGG 1 cut(s) 659
Eco24I GRGCYC 1 cut(s) 390
Eco31I GGTCTC 1 cut(s) 847
Eco47I GGWCC 5 cut(s) 459, 562, 825, 1062, 1095
Eco52I CGGCCG 4 cut(s) 316, 361, 1239, 1292
Eco53kI GAGCTC 1 cut(s) 388
Eco57I CTGAAG 1 cut(s) 592
Eco72I CACGTG 2 cut(s) 870, 1219
Eco88I CYCGRG 4 cut(s) 505, 536, 890, 1085
EcoICRI GAGCTC 1 cut(s) 388
EcoO109I RGGNCCY 1 cut(s) 459
EcoRII CCWGG 3 cut(s) 549, 558, 564
EcoT14I CCWWGG 1 cut(s) 659
EcoT38I GRGCYC 1 cut(s) 390
EgeI GGCGCC 1 cut(s) 328
EheI GGCGCC 1 cut(s) 328
ErhI CCWWGG 1 cut(s) 659
Esp3I CGTCTC 2 cut(s) 67, 887
FaeI CATG 3 cut(s) 746, 1227, 1282
FaiI YATR 6 cut(s) 683, 744, 779, 1225, 1280, 1305
FaqI GGGAC 3 cut(s) 140, 359, 388
FatI CATG 3 cut(s) 742, 1223, 1278
FauI CCCGC 4 cut(s) 227, 384, 413, 983
FblI GTMKAC 2 cut(s) 417, 1160
FokI GGATG 2 cut(s) 149, 1295
FriOI GRGCYC 1 cut(s) 390
GlaI GCGC 7 cut(s) 287, 328, 709, 815, 838, 908, 979
GsaI CCCAGC 2 cut(s) 60, 294
GsuI CTGGAG 1 cut(s) 923
HaeII RGCGCY 2 cut(s) 289, 330
HaeIII GGCC 9 cut(s) 318, 339, 363, 494, 885, 962, 1084, 1241, 1294
HgaI GACGC 7 cut(s) 49, 355, 475, 762, 969, 1033, 1244
HhaI GCGC 7 cut(s) 288, 329, 710, 816, 839, 909, 980
Hin1I GRCGYC 4 cut(s) 327, 773, 1013, 1025
Hin1II CATG 3 cut(s) 746, 1227, 1282
Hin6I GCGC 7 cut(s) 286, 327, 708, 814, 837, 907, 978
HinP1I GCGC 7 cut(s) 286, 327, 708, 814, 837, 907, 978
HincII GTYRAC 2 cut(s) 735, 1161
HindII GTYRAC 2 cut(s) 735, 1161
HinfI GANTC 8 cut(s) 173, 438, 510, 784, 847, 888, 955, 1018
HphI GGTGA 5 cut(s) 118, 244, 361, 793, 1042
Hpy166II GTNNAC 6 cut(s) 88, 418, 735, 999, 1033, 1161
Hpy188III TCNNGA 5 cut(s) 304, 892, 1000, 1177, 1312
Hpy8I GTNNAC 6 cut(s) 88, 418, 735, 999, 1033, 1161
HpyAV CCTTC 4 cut(s) 85, 102, 799, 1309
HpyCH4III ACNGT 7 cut(s) 85, 373, 636, 925, 973, 1037, 1165
HpyCH4IV ACGT 5 cut(s) 869, 896, 1013, 1218, 1248
HpyCH4V TGCA 6 cut(s) 114, 597, 628, 1138, 1213, 1227
HpyF10VI GCNNNNNNNGC 7 cut(s) 324, 333, 385, 603, 813, 1250, 1259
HpyF3I CTNAG 7 cut(s) 189, 465, 851, 947, 1128, 1274, 1322
HpySE526I ACGT 5 cut(s) 869, 896, 1013, 1218, 1248
Hsp92I GRCGYC 4 cut(s) 327, 773, 1013, 1025
Hsp92II CATG 3 cut(s) 746, 1227, 1282
HspAI GCGC 7 cut(s) 286, 327, 708, 814, 837, 907, 978
KasI GGCGCC 1 cut(s) 326
Kpn2I TCCGGA 1 cut(s) 1311
KpnI GGTACC 1 cut(s) 657
KroI GCCGGC 1 cut(s) 1290
KroNI GCCGGC 1 cut(s) 1292
KspI CCGCGG 1 cut(s) 325
Kzo9I GATC 7 cut(s) 4, 24, 306, 738, 1002, 1173, 1270
LmnI GCTCC 8 cut(s) 227, 360, 646, 700, 904, 920, 1314, 1318
Lsp1109I GCAGC 8 cut(s) 592, 702, 823, 930, 1059, 1119, 1122, 1225
LweI GCATC 1 cut(s) 1273
MaeII ACGT 5 cut(s) 869, 896, 1013, 1218, 1248
MaeIII GTNAC 3 cut(s) 367, 781, 1219
MalI GATC 7 cut(s) 6, 26, 308, 740, 1004, 1175, 1272
MbiI CCGCTC 2 cut(s) 222, 379
MboI GATC 7 cut(s) 4, 24, 306, 738, 1002, 1173, 1270
MboII GAAGA 1 cut(s) 580
MflI RGATCY 3 cut(s) 4, 24, 1270
MhlI GDGCHC 2 cut(s) 14, 390
MlsI TGGCCA 1 cut(s) 962
MluCI AATT 2 cut(s) 599, 664
MluNI TGGCCA 1 cut(s) 962
Mly113I GGCGCC 1 cut(s) 327
MlyI GAGTC 4 cut(s) 167, 778, 882, 1027
MmeI TCCRAC 5 cut(s) 624, 852, 942, 1083, 1186
Mox20I TGGCCA 1 cut(s) 962
MroI TCCGGA 1 cut(s) 1311
MroNI GCCGGC 1 cut(s) 1290
MscI TGGCCA 1 cut(s) 962
MseI TTAA 1 cut(s) 482
MslI CAYNNNNRTG 1 cut(s) 398
Msp20I TGGCCA 1 cut(s) 962
MspA1I CMGCKG 2 cut(s) 324, 1132
MvaI CCWGG 3 cut(s) 551, 560, 566
MvnI CGCG 9 cut(s) 324, 366, 710, 767, 816, 839, 909, 980, 1238
MwoI GCNNNNNNNGC 7 cut(s) 324, 333, 385, 603, 813, 1250, 1259
NaeI GCCGGC 1 cut(s) 1292
NarI GGCGCC 1 cut(s) 327
NciI CCSGG 9 cut(s) 457, 491, 651, 804, 834, 1066, 1086, 1087, 1099
NdeII GATC 7 cut(s) 4, 24, 306, 738, 1002, 1173, 1270
NgoMIV GCCGGC 1 cut(s) 1290
NlaIII CATG 3 cut(s) 746, 1227, 1282
NmeAIII GCCGAG 2 cut(s) 339, 409
NmuCI GTSAC 3 cut(s) 367, 781, 1219
NotI GCGGCCGC 1 cut(s) 1239
NspI RCATGY 1 cut(s) 1227
OliI CACNNNNGTG 1 cut(s) 398
PaeR7I CTCGAG 1 cut(s) 890
PcsI WCGNNNNNNNCGW 3 cut(s) 534, 875, 1076
PdiI GCCGGC 1 cut(s) 1292
PfeI GAWTC 4 cut(s) 438, 510, 847, 955
Pfl23II CGTACG 1 cut(s) 19
PflFI GACNNNGTC 1 cut(s) 923
Ple19I CGATCG 1 cut(s) 1005
PleI GAGTC 4 cut(s) 167, 778, 882, 1026
PluTI GGCGCC 1 cut(s) 330
PmaCI CACGTG 2 cut(s) 870, 1219
PmlI CACGTG 2 cut(s) 870, 1219
PpsI GAGTC 4 cut(s) 167, 778, 882, 1026
Ppu21I YACGTR 3 cut(s) 870, 1219, 1249
PpuMI RGGWCCY 1 cut(s) 459
Psp124BI GAGCTC 1 cut(s) 390
Psp5II RGGWCCY 1 cut(s) 459
Psp6I CCWGG 3 cut(s) 549, 558, 564
PspCI CACGTG 2 cut(s) 870, 1219
PspFI CCCAGC 2 cut(s) 56, 290
PspGI CCWGG 3 cut(s) 549, 558, 564
PspLI CGTACG 1 cut(s) 19
PspPI GGNCC 8 cut(s) 459, 492, 562, 825, 883, 1062, 1083, 1095
PspPPI RGGWCCY 1 cut(s) 459
PstI CTGCAG 1 cut(s) 1140
PstNI CAGNNNCTG 1 cut(s) 1135
PsuI RGATCY 3 cut(s) 4, 24, 1270
PsyI GACNNNGTC 1 cut(s) 923
PvuI CGATCG 1 cut(s) 1005
PvuII CAGCTG 1 cut(s) 1132
RsaI GTAC 3 cut(s) 21, 655, 932
RsaNI GTAC 3 cut(s) 20, 654, 931
RseI CAYNNNNRTG 1 cut(s) 398
SacI GAGCTC 1 cut(s) 390
SacII CCGCGG 1 cut(s) 325
SalI GTCGAC 1 cut(s) 1159
SaqAI TTAA 1 cut(s) 482
Sau3AI GATC 7 cut(s) 4, 24, 306, 738, 1002, 1173, 1270
Sau96I GGNCC 8 cut(s) 459, 492, 562, 825, 883, 1062, 1083, 1095
SchI GAGTC 4 cut(s) 167, 778, 882, 1027
SduI GDGCHC 2 cut(s) 14, 390
SfaNI GCATC 1 cut(s) 1273
SfcI CTRYAG 1 cut(s) 1136
SfoI GGCGCC 1 cut(s) 328
Sfr274I CTCGAG 1 cut(s) 890
Sfr303I CCGCGG 1 cut(s) 325
SgrAI CRCCGGYG 1 cut(s) 1027
SgrBI CCGCGG 1 cut(s) 325
SgrDI CGTCGACG 1 cut(s) 1159
SinI GGWCC 5 cut(s) 459, 562, 825, 1062, 1095
SlaI CTCGAG 1 cut(s) 890
SmaI CCCGGG 1 cut(s) 1087
SmiMI CAYNNNNRTG 1 cut(s) 398
SmlI CTYRAG 2 cut(s) 47, 890
SmoI CTYRAG 2 cut(s) 47, 890
Sse9I AATT 2 cut(s) 599, 664
SspDI GGCGCC 1 cut(s) 326
SstI GAGCTC 1 cut(s) 390
StyI CCWWGG 1 cut(s) 659
TaaI ACNGT 7 cut(s) 85, 373, 636, 925, 973, 1037, 1165
TaiI ACGT 5 cut(s) 872, 899, 1016, 1221, 1251
TasI AATT 2 cut(s) 599, 664
TfiI GAWTC 4 cut(s) 438, 510, 847, 955
Tru1I TTAA 1 cut(s) 482
Tru9I TTAA 1 cut(s) 482
TseFI GTSAC 3 cut(s) 367, 781, 1219
TseI GCWGC 8 cut(s) 580, 690, 811, 943, 1047, 1132, 1135, 1213
Tsp45I GTSAC 3 cut(s) 367, 781, 1219
TspGWI ACGGA 3 cut(s) 37, 543, 1244
TspMI CCCGGG 1 cut(s) 1085
Tth111I GACNNNGTC 1 cut(s) 923
VpaK11BI GGWCC 5 cut(s) 459, 562, 825, 1062, 1095
XapI RAATTY 1 cut(s) 599
XceI RCATGY 1 cut(s) 1227
XhoI CTCGAG 1 cut(s) 890
XmaI CCCGGG 1 cut(s) 1085
XmiI GTMKAC 2 cut(s) 417, 1160
ZraI GACGTC 1 cut(s) 1014
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.