Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0009493

Physical Location & Seq

Genomic Coordinates Reverse (-)

3574216 .. 3576251

Gene Structure 2036 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0022000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGAGAGAACTTATCGAAGGAAGCCATAATTACTTTTCTAGAGAACTAGTTGAGGCTCAATTTGCGGCAGAACTAATTGACCCTGCTGTGAAGGGAACACTAAATGTTCTGAAATCATGCAAAAAATTTCCAACTGTCAAGCGAGTGGTTTTGACATCTTCTATGGCTTCACTATGGTATCTTCTTTCAAAGACTTTAGCTGAGGAGGCTGCTTGGAAATTTGCTGAAGGAAATGGGATTGACTTGGTTTCAATAAATCCGGGGTTTGTGATAGGACCACTCTTACAGCCGACAATTAATTTGACCGTGGAGATGATTCAGAATCTCATAACTGGCAAGGCAGTGCCCGCTTCAAATTACAGATTGATTGATGTTAGAGATGTTGCCTTGGCTCATATTCAAGCATTTGAAGTTCCTTCAGCTACAGGAAGGTATTGTTTGGTCAGCCATGCTGCGCACATTTCTGAGGTTCTAGAGATTATACAACAACTTTATCCCACTCTGCACATTCCTGAAAGATGTGAGGATGACAATCCTCTTTTGCTTCCTTCTGACCCACAGTTTCAAGTATCCAAGGAGAAGGCAAAAGGTCTGGGAATTGGTTTTTATCCATTTGAAGTAACTCTGAAGGACACTATTGAAAGCCTGAAGGAGAAGGGCTTTCTCAACATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Vps62

Protein Analysis

224

Amino Acids

24.84

Weight (kDa)

5.58

Isoelectric Point (pI)

39.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009493)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44260 AT2G44260
fragaria_vesca	FvH4_7g01900
malus_domestica	MD07G1000300.v1.1 MD07G1000600.v1.1
prunus_persica	Prupe.2G001300_v2.0.a1 Prupe.8G213300_v2.0.a1
pyrus_communis	pycom07g00030 pycom07g00050 pycom1315g00030
rosa_chinensis	RchiOBHm_Chr1g0318501
rosa_laevigata	RLG00000030531
rosa_multiflora	Rmu_co8465999.1_g000001 Rmu_sc0002545.1_g000069 Rmu_sc0008280.1_g000005
rosa_roxburghii	Rroxscaffold_4G00329070
rosa_rugosa	Rorug01G0022000
rosa_samantha	Rh1AG034300 Rh1BG030400 Rh1CG033900 Rh1DG036800
rosa_wichuraiana	Rw1G002720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	456
AciI	CCGC	2 cut(s)	65, 348
AcsI	RAATTY	2 cut(s)	125, 218
AcuI	CTGAAG	4 cut(s)	246, 402, 647, 668
AgsI	TTSAA	8 cut(s)	189, 252, 354, 401, 410, 566, 617, 641
AhlI	ACTAGT	1 cut(s)	46
AluBI	AGCT	2 cut(s)	200, 422
AluI	AGCT	2 cut(s)	200, 422
ApeKI	GCWGC	2 cut(s)	209, 452
ApoI	RAATTY	2 cut(s)	125, 218
ArsI	GACNNNNNNTTYG	2 cut(s)	283, 315
AseI	ATTAAT	1 cut(s)	297
AspLEI	GCGC	1 cut(s)	457
AspS9I	GGNCC	1 cut(s)	275
AsuC2I	CCSGG	1 cut(s)	261
AvaII	GGWCC	1 cut(s)	275
BaeGI	GKGCMC	1 cut(s)	348
BaeI	ACNNNNGTAYC	2 cut(s)	161, 194
BbvCI	CCTCAGC	1 cut(s)	201
BbvI	GCAGC	2 cut(s)	196, 439
BciVI	GTATCC	1 cut(s)	580
BcnI	CCSGG	1 cut(s)	261
BcuI	ACTAGT	1 cut(s)	46
BfaI	CTAG	3 cut(s)	39, 47, 473
BfmI	CTRYAG	1 cut(s)	423
BfuI	GTATCC	1 cut(s)	580
BisI	GCNGC	3 cut(s)	66, 210, 453
BlsI	GCNGC	3 cut(s)	67, 211, 454
Bme1390I	CCNGG	1 cut(s)	261
Bme18I	GGWCC	1 cut(s)	275
BmgT120I	GGNCC	1 cut(s)	275
BmrFI	CCNGG	1 cut(s)	261
Bpu10I	CCTNAGC	1 cut(s)	201
BpuMI	CCSGG	1 cut(s)	261
BsaBI	GATNNNNATC	1 cut(s)	531
BsaJI	CCNNGG	4 cut(s)	260, 306, 387, 573
Bse1I	ACTGG	1 cut(s)	337
Bse8I	GATNNNNATC	1 cut(s)	531
BseDI	CCNNGG	4 cut(s)	260, 306, 387, 573
BseGI	GGATG	1 cut(s)	532
BseJI	GATNNNNATC	1 cut(s)	531
BseMII	CTCAG	2 cut(s)	192, 456
BseNI	ACTGG	1 cut(s)	337
BseRI	GAGGAG	1 cut(s)	218
BseSI	GKGCMC	1 cut(s)	348
BseXI	GCAGC	7 cut(s)	196, 313, 439, 768, 799, 928, 1366
BsgI	GTGCAG	1 cut(s)	488
BsiSI	CCGG	1 cut(s)	260
Bsp1286I	GDGCHC	1 cut(s)	348
BspACI	CCGC	2 cut(s)	65, 348
BspCNI	CTCAG	2 cut(s)	193, 457
BsrI	ACTGG	1 cut(s)	337
BssECI	CCNNGG	4 cut(s)	260, 306, 387, 573
BssT1I	CCWWGG	2 cut(s)	387, 573
Bst4CI	ACNGT	3 cut(s)	136, 307, 561
BstC8I	GCNNGC	1 cut(s)	348
BstDEI	CTNAG	2 cut(s)	201, 465
BstDSI	CCRYGG	1 cut(s)	306
BstF5I	GGATG	1 cut(s)	532
BstHHI	GCGC	1 cut(s)	457
BstMWI	GCNNNNNNNGC	3 cut(s)	62, 206, 347
BstSCI	CCNGG	1 cut(s)	259
BstSFI	CTRYAG	1 cut(s)	423
BstSLI	GKGCMC	1 cut(s)	348
BstV1I	GCAGC	2 cut(s)	196, 439
BsuI	GTATCC	1 cut(s)	580
BtgI	CCRYGG	1 cut(s)	306
BtsCI	GGATG	1 cut(s)	532
BtsI	GCAGTG	1 cut(s)	348
BtsIMutI	CAGTG	1 cut(s)	348
Cac8I	GCNNGC	1 cut(s)	348
CfoI	GCGC	1 cut(s)	457
Cfr13I	GGNCC	1 cut(s)	275
CviAII	CATG	2 cut(s)	117, 449
DdeI	CTNAG	2 cut(s)	201, 465
Eco130I	CCWWGG	2 cut(s)	387, 573
Eco47I	GGWCC	1 cut(s)	275
Eco57I	CTGAAG	4 cut(s)	246, 402, 647, 668
EcoT14I	CCWWGG	2 cut(s)	387, 573
ErhI	CCWWGG	2 cut(s)	387, 573
FaeI	CATG	2 cut(s)	120, 452
FaiI	YATR	8 cut(s)	27, 118, 164, 175, 329, 396, 450, 482
FatI	CATG	2 cut(s)	116, 448
FauI	CCCGC	1 cut(s)	355
Fnu4HI	GCNGC	3 cut(s)	66, 210, 453
FokI	GGATG	1 cut(s)	539
Fsp4HI	GCNGC	3 cut(s)	66, 210, 453
FspBI	CTAG	3 cut(s)	39, 47, 473
FspI	TGCGCA	1 cut(s)	456
GlaI	GCGC	1 cut(s)	456
GluI	GCNGC	3 cut(s)	66, 210, 453
HapII	CCGG	1 cut(s)	260
HhaI	GCGC	1 cut(s)	457
Hin1II	CATG	2 cut(s)	120, 452
Hin6I	GCGC	1 cut(s)	455
HinP1I	GCGC	1 cut(s)	455
HinfI	GANTC	2 cut(s)	316, 322
HpaII	CCGG	1 cut(s)	260
Hpy188I	TCNGA	5 cut(s)	111, 321, 466, 553, 627
Hpy188III	TCNNGA	3 cut(s)	39, 473, 512
HpyCH4III	ACNGT	3 cut(s)	136, 307, 561
HpyCH4V	TGCA	2 cut(s)	120, 505
HpyF10VI	GCNNNNNNNGC	3 cut(s)	62, 206, 347
HpyF3I	CTNAG	2 cut(s)	201, 465
Hsp92II	CATG	2 cut(s)	120, 452
HspAI	GCGC	1 cut(s)	455
LpnPI	CCDG	7 cut(s)	96, 273, 318, 411, 525, 578, 659
Lsp1109I	GCAGC	2 cut(s)	196, 439
MaeI	CTAG	3 cut(s)	39, 47, 473
MaeIII	GTNAC	1 cut(s)	619
MboII	GAAGA	2 cut(s)	150, 173
MhlI	GDGCHC	1 cut(s)	348
MluCI	AATT	9 cut(s)	28, 59, 75, 125, 218, 294, 298, 355, 597
MmeI	TCCRAC	1 cut(s)	155
MnlI	CCTC	6 cut(s)	46, 196, 199, 460, 517, 546
MseI	TTAA	1 cut(s)	297
MspI	CCGG	1 cut(s)	260
MspR9I	CCNGG	1 cut(s)	261
MwoI	GCNNNNNNNGC	3 cut(s)	62, 206, 347
NciI	CCSGG	1 cut(s)	261
NlaIII	CATG	2 cut(s)	120, 452
NsbI	TGCGCA	1 cut(s)	456
PfeI	GAWTC	2 cut(s)	316, 322
PkrI	GCNGC	3 cut(s)	67, 211, 454
PshBI	ATTAAT	1 cut(s)	297
PspPI	GGNCC	1 cut(s)	275
SaqAI	TTAA	1 cut(s)	297
SatI	GCNGC	3 cut(s)	66, 210, 453
Sau96I	GGNCC	1 cut(s)	275
ScrFI	CCNGG	1 cut(s)	261
SduI	GDGCHC	1 cut(s)	348
SetI	ASST	5 cut(s)	202, 424, 434, 471, 592
SfcI	CTRYAG	1 cut(s)	423
SinI	GGWCC	1 cut(s)	275
SpeI	ACTAGT	1 cut(s)	46
Sse9I	AATT	9 cut(s)	28, 59, 75, 125, 218, 294, 298, 355, 597
SsiI	CCGC	2 cut(s)	65, 348
SspMI	CTAG	3 cut(s)	39, 47, 473
StyD4I	CCNGG	1 cut(s)	259
StyI	CCWWGG	2 cut(s)	387, 573
TaaI	ACNGT	3 cut(s)	136, 307, 561
TaqI	TCGA	1 cut(s)	15
TasI	AATT	9 cut(s)	28, 59, 75, 125, 218, 294, 298, 355, 597
TauI	GCSGC	1 cut(s)	68
TfiI	GAWTC	2 cut(s)	316, 322
Tru1I	TTAA	1 cut(s)	297
Tru9I	TTAA	1 cut(s)	297
TscAI	CASTG	1 cut(s)	348
TseI	GCWGC	2 cut(s)	209, 452
TspRI	CASTG	1 cut(s)	348
VpaK11BI	GGWCC	1 cut(s)	275
VspI	ATTAAT	1 cut(s)	297
XapI	RAATTY	2 cut(s)	125, 218
XbaI	TCTAGA	2 cut(s)	38, 472
XspI	CTAG	3 cut(s)	39, 47, 473

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.