Rorug01G0092100

Component of the EKC KEOPS complex that is required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. The complex is probably involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37. Likely plays a direct catalytic role in this reaction, but requires other protein(s) of the complex to fulfill this activity

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
Physical Location & Seq
Forward (+)
15040390 .. 15043893
3504 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0092100.1

Sequence Viewer

Length: 1734 bp
ATGAAGCGTCGATTCAAAATGTGCAGCGATTCAAATCTGACGAAGCTCCACCGTCTGATCGACGATTCTCTCCGTCCGTACACAGAACCAGATGTCGTTTCGGTGACGAAGGAGGGAGAAATTCTGGTCAGTCTCTCTCAGATTCTTCGGCAAGTGAAGCTCTGGATTGGAGAAGTTGATTCCGATTCTGATAATGGAGTGGTGATTGGATTGGATTTTGAGAATGAGTGTATGTGTCTGAGTAAAATCTTAACTTACTTGGTAAGTTTGTTTTTTAACTTTGATGGAGAGTCAATATGTGAAGCATCTGGGCTAGCTGCTGTCTCCGAATTCGTGGCGGCTTCGGGAAGCCACTGGGATGCCTTTATTCGTTTGTTGTGTGATTGTATGGATTTGGCAATTACTGCGGCAGTTTCATGTTCTACATCGACTTTGGCAACTGGAGCTAGTGATCTTTGTTCTAGTTCATTGAGTTTAATTCTCGTGCTGAAACCTAAGGTGAAAAATGGTGACTGGTCTGTAGCGGCTGGTGTTGTTCGGGTGCTACGTGATATACTGAAGTATTTGAAGTCTGAGGATGATGACGAACTTGTTAAAGTGTTCATTGAGGCTGTTAATTCTTTTCTTTCAACAGTGCCTTGGGATTTATTGCATGAGATTCGTGTTGGTCCAAATGCTGATGCTCTGAAATGCTCCAGGGCAGATGTTTCATTCCAAAGAACCTTGTTTCTAGGAAACTTGATTCAGTTTCTCTGTTCCTTGGTCGAGCAAGGCAGTGTTGTGCTAATGATCAGGCTCATTGTCCAAACTTGTCCAGAATCCTCAATTCTTGTTTCATGGTTGCAACTTATCCATTATTACTTTGAAGAGCTTTTGCGGCAACCCATTTCTACTCTGGAGTGTAATCAGGAAGATTGTATGGAAGGCTCTCCATTTCTATCCAGTGTTTCTGATTCAGAAGTAAATAAGTTGCAGTGTTGTGGAAGAAAGGAAGGACTGTTGGAGCTTAATAACTGGCTTCAAGGACATCTTCCAACTGATATGTTTGTGGACCATGAAATGTATTTTGAAAAATGTGCAGACTTTGCCAAATCCTTCCTCCAACTATATATCAAAGAGGATGATGTATTATTCAGAGTGCTCTTGCAATTGCTTTGTGTACCTTGTCCTGCAGAGAAACAGTTTGAAGAGGAAAGGGGATCATTTCAGGATTCAAAGGGCAATGTGCTTTTCTTTGTTTCAGATCTTTTCAATCCTGTACTCTTATTCCATCTATTTCTTGTAGAGTTAAGCTATGACCATCAAGTGCTTCTTGATTACCTTATTACAAAAGATACTGGAATCAGTTGTGCAGAATATCTTTTAAGGTGCTTGCGTAAAGTGTGTGATTCATGGAGCTTATTTGTGGAATTTCCACCGAGTGGACAAGCTATTAATCGATCATCTTGCAAGAAAAGAAAAGTTTCATTGAATGGGTCGAGTTTCTGTGGAGCAGATTTGTTTGCGCTAGTGAAAGACTCTGGAGGTTTGTTTCTTGAAGATGAATGTGGCGATGAAAACAAATATGATTTCATGCACACTCGAGAGAATTTCCAAAAAACCAAAGAGTGCTTAATTTCGTTGAAAAATTCGATTGAAAGTCTCCACCGAAAGAATCTATTTCCCGACAATCCTAATGCTCTTTTGAACCGCTTAATGAGGTTTCAGGAACTCTGTTTCGAGGAGGAAAAATAA

Protein Analysis

577

Amino Acids

65.24

Weight (kDa)

4.85

Isoelectric Point (pI)

46.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LINES_N PF14694 347 - 470 2e-09 Lines N-terminus
LINES_C PF14695 534 - 570 2.8e-12 Lines C-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0014229)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G22720 AT4G22720
fragaria_vesca FvH4_3g16550 FvH4_3g16550
malus_domestica MD17G1219400.v1.1
prunus_persica Prupe.1G196300_v2.0.a1
pyrus_communis pycom17g22410
rosa_chinensis RchiOBHm_Chr1g0331181
rosa_laevigata RLG00000029747
rosa_multiflora Rmu_sc0005711.1_g000004
rosa_roxburghii Rroxscaffold_4G00319280
rosa_rugosa Rorug01G0092100
rosa_samantha Rh1AG116100 Rh1BG087800 Rh1CG111600 Rh1DG120500
rosa_wichuraiana Rw1G009330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1421
AciI CCGC 5 cut(s) 338, 407, 524, 877, 1690
AclWI GGATC 1 cut(s) 1207
AcsI RAATTY 5 cut(s) 120, 329, 1409, 1588, 1627
AcuI CTGAAG 1 cut(s) 578
AdeI CACNNNGTG 1 cut(s) 1421
AfaI GTAC 3 cut(s) 80, 1161, 1260
AfiI CCNNNNNNNGG 1 cut(s) 1421
AjnI CCWGG 1 cut(s) 695
AluBI AGCT 9 cut(s) 46, 160, 317, 446, 871, 1006, 1293, 1398, 1430
AluI AGCT 9 cut(s) 46, 160, 317, 446, 871, 1006, 1293, 1398, 1430
Alw21I GWGCWC 1 cut(s) 1143
Alw26I GTCTC 3 cut(s) 137, 328, 1646
AlwI GGATC 1 cut(s) 1207
Ama87I CYCGRG 1 cut(s) 1581
ApeKI GCWGC 2 cut(s) 24, 317
ApoI RAATTY 5 cut(s) 120, 329, 1409, 1588, 1627
AseI ATTAAT 1 cut(s) 1434
Asp700I GAANNNNTTC 1 cut(s) 1462
AspLEI GCGC 1 cut(s) 1507
AspS9I GGNCC 2 cut(s) 668, 1051
AsuHPI GGTGA 4 cut(s) 115, 214, 511, 521
AsuNHI GCTAGC 1 cut(s) 313
AvaI CYCGRG 1 cut(s) 1581
AvaII GGWCC 2 cut(s) 668, 1051
AxyI CCTNAGG 1 cut(s) 495
BauI CACGAG 1 cut(s) 482
Bbv12I GWGCWC 1 cut(s) 1143
BbvI GCAGC 2 cut(s) 36, 304
BccI CCATC 3 cut(s) 278, 1278, 1308
BcgI CGANNNNNNTGC 4 cut(s) 641, 675, 1428, 1462
BciT130I CCWGG 1 cut(s) 697
BclI TGATCA 1 cut(s) 789
BcoDI GTCTC 3 cut(s) 137, 328, 1646
BfaI CTAG 5 cut(s) 314, 447, 462, 731, 1508
BfmI CTRYAG 2 cut(s) 519, 1170
BglII AGATCT 1 cut(s) 1243
BisI GCNGC 6 cut(s) 25, 318, 339, 408, 525, 878
BlsI GCNGC 6 cut(s) 26, 319, 340, 409, 526, 879
Bme1390I CCNGG 1 cut(s) 697
Bme18I GGWCC 2 cut(s) 668, 1051
BmeT110I CYCGRG 1 cut(s) 1581
BmgT120I GGNCC 2 cut(s) 668, 1051
BmrFI CCNGG 1 cut(s) 697
BmrI ACTGGG 1 cut(s) 364
BmsI GCATC 3 cut(s) 314, 349, 670
BmtI GCTAGC 1 cut(s) 317
BmuI ACTGGG 1 cut(s) 364
BpmI CTGGAG 4 cut(s) 462, 679, 917, 1542
Bsa29I ATCGAT 1 cut(s) 1438
BsaAI YACGTR 1 cut(s) 548
BsaBI GATNNNNATC 1 cut(s) 33
BsaJI CCNNGG 3 cut(s) 638, 696, 759
Bsc4I CCNNNNNNNGG 1 cut(s) 1421
Bse1I ACTGG 6 cut(s) 359, 445, 518, 942, 1019, 1342
Bse21I CCTNAGG 1 cut(s) 495
Bse3DI GCAATG 1 cut(s) 1228
Bse8I GATNNNNATC 1 cut(s) 33
BseBI CCWGG 1 cut(s) 697
BseCI ATCGAT 1 cut(s) 1438
BseDI CCNNGG 3 cut(s) 638, 696, 759
BseGI GGATG 3 cut(s) 364, 583, 1126
BseJI GATNNNNATC 1 cut(s) 33
BseLI CCNNNNNNNGG 1 cut(s) 1421
BseMI GCAATG 1 cut(s) 1228
BseMII CTCAG 3 cut(s) 152, 230, 564
BseNI ACTGG 6 cut(s) 359, 445, 518, 942, 1019, 1342
BseXI GCAGC 2 cut(s) 36, 304
BsgI GTGCAG 3 cut(s) 43, 1098, 1371
BshVI ATCGAT 1 cut(s) 1438
BsiHKAI GWGCWC 1 cut(s) 1143
BsiHKCI CYCGRG 1 cut(s) 1581
BslI CCNNNNNNNGG 1 cut(s) 1421
BsmAI GTCTC 3 cut(s) 137, 328, 1646
BsoBI CYCGRG 1 cut(s) 1581
Bsp1286I GDGCHC 1 cut(s) 1143
Bsp143I GATC 6 cut(s) 57, 451, 789, 1199, 1243, 1439
BspACI CCGC 5 cut(s) 338, 407, 524, 877, 1690
BspCNI CTCAG 3 cut(s) 151, 231, 565
BspDI ATCGAT 1 cut(s) 1438
BspMAI CTGCAG 1 cut(s) 1174
BspOI GCTAGC 1 cut(s) 317
BspPI GGATC 1 cut(s) 1207
BspQI GCTCTTC 1 cut(s) 861
BsrDI GCAATG 1 cut(s) 1228
BsrI ACTGG 6 cut(s) 359, 445, 518, 942, 1019, 1342
BssECI CCNNGG 3 cut(s) 638, 696, 759
BssMI GATC 6 cut(s) 57, 451, 789, 1199, 1243, 1439
BssSI CACGAG 1 cut(s) 482
BssT1I CCWWGG 2 cut(s) 638, 759
Bst2BI CACGAG 1 cut(s) 482
Bst2UI CCWGG 1 cut(s) 697
Bst4CI ACNGT 4 cut(s) 53, 634, 999, 1182
Bst6I CTCTTC 2 cut(s) 861, 1182
BstAPI GCANNNNNTGC 2 cut(s) 404, 1085
BstBAI YACGTR 1 cut(s) 548
BstC8I GCNNGC 2 cut(s) 315, 1373
BstDEI CTNAG 4 cut(s) 138, 239, 495, 573
BstF5I GGATG 3 cut(s) 364, 583, 1126
BstHHI GCGC 1 cut(s) 1507
BstKTI GATC 6 cut(s) 60, 454, 792, 1202, 1246, 1442
BstMAI GTCTC 3 cut(s) 137, 328, 1646
BstMBI GATC 6 cut(s) 57, 451, 789, 1199, 1243, 1439
BstMWI GCNNNNNNNGC 5 cut(s) 157, 404, 443, 877, 1085
BstNI CCWGG 1 cut(s) 697
BstSCI CCNGG 1 cut(s) 695
BstSFI CTRYAG 2 cut(s) 519, 1170
BstV1I GCAGC 2 cut(s) 36, 304
BstX2I RGATCY 1 cut(s) 1243
BstYI RGATCY 1 cut(s) 1243
Bsu15I ATCGAT 1 cut(s) 1438
Bsu36I CCTNAGG 1 cut(s) 495
BsuTUI ATCGAT 1 cut(s) 1438
BtgZI GCGATG 1 cut(s) 1566
BtsCI GGATG 3 cut(s) 364, 583, 1126
BtsI GCAGTG 2 cut(s) 781, 980
BtsIMutI CAGTG 5 cut(s) 352, 639, 781, 949, 980
Cac8I GCNNGC 2 cut(s) 315, 1373
CfoI GCGC 1 cut(s) 1507
Cfr13I GGNCC 2 cut(s) 668, 1051
ClaI ATCGAT 1 cut(s) 1438
Csp6I GTAC 3 cut(s) 79, 1160, 1259
CviAII CATG 6 cut(s) 417, 653, 837, 1055, 1392, 1573
CviQI GTAC 3 cut(s) 79, 1160, 1259
DdeI CTNAG 4 cut(s) 138, 239, 495, 573
DpnI GATC 6 cut(s) 59, 453, 791, 1201, 1245, 1441
DpnII GATC 6 cut(s) 57, 451, 789, 1199, 1243, 1439
DraIII CACNNNGTG 1 cut(s) 1421
Eam1104I CTCTTC 2 cut(s) 861, 1182
EarI CTCTTC 2 cut(s) 861, 1182
Eco130I CCWWGG 2 cut(s) 638, 759
Eco47I GGWCC 2 cut(s) 668, 1051
Eco57I CTGAAG 1 cut(s) 578
Eco81I CCTNAGG 1 cut(s) 495
Eco88I CYCGRG 1 cut(s) 1581
EcoRI GAATTC 1 cut(s) 329
EcoRII CCWGG 1 cut(s) 695
EcoT14I CCWWGG 2 cut(s) 638, 759
ErhI CCWWGG 2 cut(s) 638, 759
FaeI CATG 6 cut(s) 420, 656, 840, 1058, 1395, 1576
FalI AAGNNNNNCTT 4 cut(s) 1014, 1046, 1296, 1328
FatI CATG 6 cut(s) 416, 652, 836, 1054, 1391, 1572
FbaI TGATCA 1 cut(s) 789
Fnu4HI GCNGC 6 cut(s) 25, 318, 339, 408, 525, 878
FokI GGATG 3 cut(s) 371, 590, 1133
Fsp4HI GCNGC 6 cut(s) 25, 318, 339, 408, 525, 878
FspBI CTAG 5 cut(s) 314, 447, 462, 731, 1508
GlaI GCGC 1 cut(s) 1506
GluI GCNGC 6 cut(s) 25, 318, 339, 408, 525, 878
GsuI CTGGAG 4 cut(s) 462, 679, 917, 1542
HhaI GCGC 1 cut(s) 1507
Hin1II CATG 6 cut(s) 420, 656, 840, 1058, 1395, 1576
Hin6I GCGC 1 cut(s) 1505
HinP1I GCGC 1 cut(s) 1505
HphI GGTGA 4 cut(s) 115, 214, 511, 521
Hpy166II GTNNAC 4 cut(s) 81, 1051, 1160, 1424
Hpy8I GTNNAC 4 cut(s) 81, 1051, 1160, 1424
Hpy99I CGWCG 2 cut(s) 12, 65
HpyAV CCTTC 4 cut(s) 103, 917, 986, 1105
HpyCH4III ACNGT 4 cut(s) 53, 634, 999, 1182
HpyCH4IV ACGT 1 cut(s) 547
HpyF10VI GCNNNNNNNGC 5 cut(s) 157, 404, 443, 877, 1085
HpyF3I CTNAG 4 cut(s) 138, 239, 495, 573
HpySE526I ACGT 1 cut(s) 547
Hsp92II CATG 6 cut(s) 420, 656, 840, 1058, 1395, 1576
HspAI GCGC 1 cut(s) 1505
Ksp22I TGATCA 1 cut(s) 789
Kzo9I GATC 6 cut(s) 57, 451, 789, 1199, 1243, 1439
LguI GCTCTTC 1 cut(s) 861
LmnI GCTCC 6 cut(s) 51, 443, 698, 1003, 1395, 1490
Lsp1109I GCAGC 2 cut(s) 36, 304
LweI GCATC 3 cut(s) 314, 349, 670
MaeI CTAG 5 cut(s) 314, 447, 462, 731, 1508
MaeII ACGT 1 cut(s) 547
MaeIII GTNAC 2 cut(s) 103, 509
MalI GATC 6 cut(s) 59, 453, 791, 1201, 1245, 1441
MboI GATC 6 cut(s) 57, 451, 789, 1199, 1243, 1439
MboII GAAGA 7 cut(s) 137, 878, 923, 996, 1022, 1199, 1550
MfeI CAATTG 1 cut(s) 1148
MflI RGATCY 1 cut(s) 1243
MhlI GDGCHC 1 cut(s) 1143
MlyI GAGTC 2 cut(s) 299, 1511
MmeI TCCRAC 3 cut(s) 981, 1058, 1126
MroXI GAANNNNTTC 1 cut(s) 1462
MslI CAYNNNNRTG 1 cut(s) 357
MspR9I CCNGG 1 cut(s) 697
MunI CAATTG 1 cut(s) 1148
MvaI CCWGG 1 cut(s) 697
MwoI GCNNNNNNNGC 5 cut(s) 157, 404, 443, 877, 1085
NdeII GATC 6 cut(s) 57, 451, 789, 1199, 1243, 1439
NheI GCTAGC 1 cut(s) 313
NlaIII CATG 6 cut(s) 420, 656, 840, 1058, 1395, 1576
NmuCI GTSAC 2 cut(s) 103, 509
PaeR7I CTCGAG 1 cut(s) 1581
PciSI GCTCTTC 1 cut(s) 861
PcsI WCGNNNNNNNCGW 1 cut(s) 544
PdmI GAANNNNTTC 1 cut(s) 1462
PflMI CCANNNNNTGG 1 cut(s) 1421
PkrI GCNGC 6 cut(s) 26, 319, 340, 409, 526, 879
PleI GAGTC 2 cut(s) 298, 1511
PpsI GAGTC 2 cut(s) 298, 1511
Ppu21I YACGTR 1 cut(s) 548
PshBI ATTAAT 1 cut(s) 1434
Psp6I CCWGG 1 cut(s) 695
PspGI CCWGG 1 cut(s) 695
PspPI GGNCC 2 cut(s) 668, 1051
PstI CTGCAG 1 cut(s) 1174
PsuI RGATCY 1 cut(s) 1243
RsaI GTAC 3 cut(s) 80, 1161, 1260
RsaNI GTAC 3 cut(s) 79, 1160, 1259
RseI CAYNNNNRTG 1 cut(s) 357
SapI GCTCTTC 1 cut(s) 861
SatI GCNGC 6 cut(s) 25, 318, 339, 408, 525, 878
Sau3AI GATC 6 cut(s) 57, 451, 789, 1199, 1243, 1439
Sau96I GGNCC 2 cut(s) 668, 1051
SchI GAGTC 2 cut(s) 299, 1511
ScrFI CCNGG 1 cut(s) 697
SduI GDGCHC 1 cut(s) 1143
SfaNI GCATC 3 cut(s) 314, 349, 670
SfcI CTRYAG 2 cut(s) 519, 1170
Sfr274I CTCGAG 1 cut(s) 1581
SinI GGWCC 2 cut(s) 668, 1051
SlaI CTCGAG 1 cut(s) 1581
SmiMI CAYNNNNRTG 1 cut(s) 357
SmlI CTYRAG 1 cut(s) 1581
SmoI CTYRAG 1 cut(s) 1581
SsiI CCGC 5 cut(s) 338, 407, 524, 877, 1690
SspMI CTAG 5 cut(s) 314, 447, 462, 731, 1508
StyD4I CCNGG 1 cut(s) 695
StyI CCWWGG 2 cut(s) 638, 759
TaaI ACNGT 4 cut(s) 53, 634, 999, 1182
TaiI ACGT 1 cut(s) 550
TaqI TCGA 9 cut(s) 10, 60, 428, 765, 1438, 1478, 1582, 1631, 1719
TatI WGTACW 1 cut(s) 1258
TauI GCSGC 4 cut(s) 341, 410, 527, 880
TscAI CASTG 5 cut(s) 359, 639, 781, 949, 980
TseFI GTSAC 2 cut(s) 103, 509
TseI GCWGC 2 cut(s) 24, 317
Tsp45I GTSAC 2 cut(s) 103, 509
TspGWI ACGGA 2 cut(s) 62, 66
TspRI CASTG 5 cut(s) 359, 639, 781, 949, 980
Van91I CCANNNNNTGG 1 cut(s) 1421
VpaK11BI GGWCC 2 cut(s) 668, 1051
VspI ATTAAT 1 cut(s) 1434
XapI RAATTY 5 cut(s) 120, 329, 1409, 1588, 1627
XcmI CCANNNNNNNNNTGG 1 cut(s) 892
XhoI CTCGAG 1 cut(s) 1581
XmnI GAANNNNTTC 1 cut(s) 1462
XspI CTAG 5 cut(s) 314, 447, 462, 731, 1508
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.