Rw1G009330

Component of the EKC KEOPS complex that is required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. The complex is probably involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37. Likely plays a direct catalytic role in this reaction, but requires other protein(s) of the complex to fulfill this activity

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
Physical Location & Seq
Reverse (-)
20504170 .. 20505971
1802 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G009330.1

Sequence Viewer

Length: 1074 bp
ATGAATTCTTCTACAATAATGAAGAAACAGATTGCTCTAGGGTTTGAGGGTTCAGCAAACAAGATCGGTGTTGGCGTTGTGACCTTAGATGGCACAATTTTGTCAAACCCACGCCACACATACATTACCCCTCCTGGCCAAGGTTTCCTTCCCCGTGAAACTGCACAACACCATCTCCAATACATTCTGCCATTAATTAAATCTGCTTTGGAAACTGCAAAAGTAACCCCTCAAGAGATCGATTGCCTTTGTTACACCAAGGGTCCTGGAATGGGAGCACCACTTCAAGTTGCTGCCATTGTTGTTAGGGTTCTTTCACAGCTGTGGAAGAAGCCCATTGTTGCAGTCAATCATTGTGTTGCTCATATTGAGATGGGAAGGATTGTGACTGGTGCGGATGATCCTGTTGTGTTGTATGTAAGTGGTGGGAACACACAGGTAATTGCATATAGTGAAGGAAGGTATCGAATCTTTGGAGAGACCATTGATATTGCTGTTGGAAATTGCTTGGATCGGTTTGCTAGGGTATTAGAACTCTCCAATGATCCAGCCCCCGGATATAACATTGAGCAGCTTGCAAAGAAAGGAGAACAGTTTATAGACCTTCCTTATGCTGTCAAAGGGATGGATGTGTCTTTTAGTGGAATTCTGAGCTACATTGAAGCCACTGCTGTGGAGAAATTAAAAAATGACGAGTGCACCCCTGCAGACCTGTGCTACTCACTACAGGAAAATGTGTTCGCAATGCTTGTTGAGATAACAGAACGTGCAATGGCACATTGTGACAAGAGAGATGTACTTATTGTTGGTGGTGTGGGTTGCAATGAGCGCCTGCAAGAGATGATGAAAACCATGTGTGCTGAACGGGGTGGAAGATTGTTTGCAACTGATGATAGGTATTGTATTGATAATGGGGCAATGATTGCTTATACTGGTCTTCTTGCTTTTGCTCATGGAACATCAACCCCGTTGGAGGAATCAACTTTCACGCAACGGTTCCGGACTGATGAAGTGGAAGCAATCTGGAGAGTAAAAGAGGAGTCAGCAAAAGTTTCAGGGTATGGGAGTAGCTAA

Protein Analysis

357

Amino Acids

39.01

Weight (kDa)

5.48

Isoelectric Point (pI)

30.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TsaD PF00814 38 - 310 5.6e-85 tRNA N6-adenosine threonylcarbamoyltransferase
HypF_C_2 PF22521 184 - 303 2.5e-06 Carbamoyltransferase, Kae1-like Domain, second subdomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014229)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G22720 AT4G22720
fragaria_vesca FvH4_3g16550 FvH4_3g16550
malus_domestica MD17G1219400.v1.1
prunus_persica Prupe.1G196300_v2.0.a1
pyrus_communis pycom17g22410
rosa_chinensis RchiOBHm_Chr1g0331181
rosa_laevigata RLG00000029747
rosa_multiflora Rmu_sc0005711.1_g000004
rosa_roxburghii Rroxscaffold_4G00319280
rosa_rugosa Rorug01G0092100
rosa_samantha Rh1AG116100 Rh1BG087800 Rh1CG111600 Rh1DG120500
rosa_wichuraiana Rw1G009330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 999
AciI CCGC 1 cut(s) 395
AclWI GGATC 3 cut(s) 395, 519, 539
AcoI YGGCCR 1 cut(s) 136
AcsI RAATTY 2 cut(s) 4, 645
AdeI CACNNNGTG 1 cut(s) 782
AfaI GTAC 1 cut(s) 798
AfiI CCNNNNNNNGG 4 cut(s) 140, 272, 554, 973
AgsI TTSAA 2 cut(s) 287, 662
AjnI CCWGG 2 cut(s) 133, 265
AjuI GAANNNNNNNTTGG 2 cut(s) 132, 164
AleI CACNNNNGTG 2 cut(s) 322, 671
AloI GAACNNNNNNTCC 2 cut(s) 722, 754
AluBI AGCT 4 cut(s) 322, 574, 654, 1071
AluI AGCT 4 cut(s) 322, 574, 654, 1071
Alw21I GWGCWC 2 cut(s) 280, 701
Alw26I GTCTC 1 cut(s) 473
Alw44I GTGCAC 1 cut(s) 697
AlwI GGATC 3 cut(s) 395, 519, 539
Aor13HI TCCGGA 1 cut(s) 999
AoxI GGCC 1 cut(s) 136
ApaLI GTGCAC 1 cut(s) 697
ApeKI GCWGC 2 cut(s) 293, 571
ApoI RAATTY 2 cut(s) 4, 645
AseI ATTAAT 1 cut(s) 194
AspLEI GCGC 1 cut(s) 831
AspS9I GGNCC 1 cut(s) 263
AsuC2I CCSGG 1 cut(s) 555
AvaII GGWCC 1 cut(s) 263
BaeGI GKGCMC 1 cut(s) 701
BalI TGGCCA 1 cut(s) 138
BbsI GAAGAC 1 cut(s) 929
Bbv12I GWGCWC 2 cut(s) 280, 701
BbvI GCAGC 2 cut(s) 280, 583
BccI CCATC 4 cut(s) 83, 180, 367, 619
BciT130I CCWGG 2 cut(s) 135, 267
BcnI CCSGG 1 cut(s) 555
BcoDI GTCTC 1 cut(s) 473
BfaI CTAG 2 cut(s) 38, 522
BfmI CTRYAG 2 cut(s) 705, 725
BfoI RGCGCY 1 cut(s) 832
BisI GCNGC 2 cut(s) 294, 572
BlsI GCNGC 2 cut(s) 295, 573
Bme1390I CCNGG 3 cut(s) 135, 267, 555
Bme18I GGWCC 1 cut(s) 263
BmgT120I GGNCC 1 cut(s) 263
BmiI GGNNCC 2 cut(s) 264, 998
BmrFI CCNGG 3 cut(s) 135, 267, 555
BpiI GAAGAC 1 cut(s) 929
BpmI CTGGAG 1 cut(s) 1045
BpuEI CTTGAG 1 cut(s) 216
BpuMI CCSGG 1 cut(s) 555
Bsa29I ATCGAT 1 cut(s) 240
BsaI GGTCTC 1 cut(s) 473
BsaJI CCNNGG 3 cut(s) 139, 258, 553
BsaWI WCCGGW 1 cut(s) 999
BsaXI ACNNNNNCTCC 2 cut(s) 159, 189
Bsc4I CCNNNNNNNGG 4 cut(s) 140, 272, 554, 973
Bse1I ACTGG 2 cut(s) 394, 937
Bse3DI GCAATG 4 cut(s) 750, 777, 829, 924
BseAI TCCGGA 1 cut(s) 999
BseBI CCWGG 2 cut(s) 135, 267
BseCI ATCGAT 1 cut(s) 240
BseDI CCNNGG 3 cut(s) 139, 258, 553
BseGI GGATG 3 cut(s) 403, 630, 634
BseLI CCNNNNNNNGG 4 cut(s) 140, 272, 554, 973
BseMI GCAATG 4 cut(s) 750, 777, 829, 924
BseMII CTCAG 1 cut(s) 641
BseNI ACTGG 2 cut(s) 394, 937
BseRI GAGGAG 1 cut(s) 1052
BseSI GKGCMC 1 cut(s) 701
BseXI GCAGC 2 cut(s) 280, 583
BsgI GTGCAG 1 cut(s) 147
BshFI GGCC 1 cut(s) 138
BshVI ATCGAT 1 cut(s) 240
BsiHKAI GWGCWC 2 cut(s) 280, 701
BsiSI CCGG 2 cut(s) 555, 1000
BslI CCNNNNNNNGG 4 cut(s) 140, 272, 554, 973
BsmAI GTCTC 1 cut(s) 473
BsnI GGCC 1 cut(s) 138
Bso31I GGTCTC 1 cut(s) 473
Bsp1286I GDGCHC 2 cut(s) 280, 701
Bsp13I TCCGGA 1 cut(s) 999
Bsp143I GATC 5 cut(s) 63, 237, 400, 511, 544
BspACI CCGC 1 cut(s) 395
BspANI GGCC 1 cut(s) 138
BspCNI CTCAG 1 cut(s) 642
BspDI ATCGAT 1 cut(s) 240
BspEI TCCGGA 1 cut(s) 999
BspLI GGNNCC 2 cut(s) 264, 998
BspMAI CTGCAG 1 cut(s) 709
BspPI GGATC 3 cut(s) 395, 519, 539
BspTNI GGTCTC 1 cut(s) 473
BsrDI GCAATG 4 cut(s) 750, 777, 829, 924
BsrI ACTGG 2 cut(s) 394, 937
BssECI CCNNGG 3 cut(s) 139, 258, 553
BssMI GATC 5 cut(s) 63, 237, 400, 511, 544
BssT1I CCWWGG 2 cut(s) 139, 258
Bst2UI CCWGG 2 cut(s) 135, 267
Bst4CI ACNGT 2 cut(s) 594, 996
BstAPI GCANNNNNTGC 1 cut(s) 923
BstC8I GCNNGC 2 cut(s) 576, 833
BstDEI CTNAG 2 cut(s) 85, 650
BstENI CCTNNNNNAGG 1 cut(s) 138
BstF5I GGATG 3 cut(s) 403, 630, 634
BstH2I RGCGCY 1 cut(s) 832
BstHHI GCGC 1 cut(s) 831
BstKTI GATC 5 cut(s) 66, 240, 403, 514, 547
BstMAI GTCTC 1 cut(s) 473
BstMBI GATC 5 cut(s) 63, 237, 400, 511, 544
BstMWI GCNNNNNNNGC 2 cut(s) 828, 923
BstNI CCWGG 2 cut(s) 135, 267
BstSCI CCNGG 3 cut(s) 133, 265, 553
BstSFI CTRYAG 2 cut(s) 705, 725
BstSLI GKGCMC 1 cut(s) 701
BstV1I GCAGC 2 cut(s) 280, 583
BstV2I GAAGAC 1 cut(s) 929
BstXI CCANNNNNNTGG 1 cut(s) 673
Bsu15I ATCGAT 1 cut(s) 240
BsuRI GGCC 1 cut(s) 138
BsuTUI ATCGAT 1 cut(s) 240
BtsCI GGATG 3 cut(s) 403, 630, 634
BtsI GCAGTG 1 cut(s) 666
BtsIMutI CAGTG 1 cut(s) 666
Cac8I GCNNGC 2 cut(s) 576, 833
CfoI GCGC 1 cut(s) 831
Cfr13I GGNCC 1 cut(s) 263
ClaI ATCGAT 1 cut(s) 240
Csp6I GTAC 1 cut(s) 797
CviAII CATG 2 cut(s) 853, 953
CviJI RGCY 8 cut(s) 138, 322, 334, 551, 574, 654, 665, 1071
CviKI_1 RGCY 8 cut(s) 138, 322, 334, 551, 574, 654, 665, 1071
CviQI GTAC 1 cut(s) 797
DdeI CTNAG 2 cut(s) 85, 650
DpnI GATC 5 cut(s) 65, 239, 402, 513, 546
DpnII GATC 5 cut(s) 63, 237, 400, 511, 544
DraIII CACNNNGTG 1 cut(s) 782
EaeI YGGCCR 1 cut(s) 136
Eco130I CCWWGG 2 cut(s) 139, 258
Eco31I GGTCTC 1 cut(s) 473
Eco47I GGWCC 1 cut(s) 263
EcoNI CCTNNNNNAGG 1 cut(s) 138
EcoO109I RGGNCCY 1 cut(s) 263
EcoRI GAATTC 2 cut(s) 4, 645
EcoRII CCWGG 2 cut(s) 133, 265
EcoT14I CCWWGG 2 cut(s) 139, 258
ErhI CCWWGG 2 cut(s) 139, 258
FaeI CATG 2 cut(s) 856, 956
FalI AAGNNNNNCTT 2 cut(s) 132, 164
FatI CATG 2 cut(s) 852, 952
Fnu4HI GCNGC 2 cut(s) 294, 572
FokI GGATG 3 cut(s) 410, 637, 641
Fsp4HI GCNGC 2 cut(s) 294, 572
FspBI CTAG 2 cut(s) 38, 522
GlaI GCGC 1 cut(s) 830
GluI GCNGC 2 cut(s) 294, 572
GsuI CTGGAG 1 cut(s) 1045
HaeII RGCGCY 1 cut(s) 832
HaeIII GGCC 1 cut(s) 138
HapII CCGG 2 cut(s) 555, 1000
HhaI GCGC 1 cut(s) 831
Hin1II CATG 2 cut(s) 856, 956
Hin6I GCGC 1 cut(s) 829
HinP1I GCGC 1 cut(s) 829
HinfI GANTC 3 cut(s) 468, 977, 1040
HpaII CCGG 2 cut(s) 555, 1000
Hpy166II GTNNAC 1 cut(s) 699
Hpy188I TCNGA 1 cut(s) 651
Hpy188III TCNNGA 3 cut(s) 233, 1000, 1024
Hpy8I GTNNAC 1 cut(s) 699
HpyAV CCTTC 5 cut(s) 158, 372, 449, 453, 614
HpyCH4III ACNGT 2 cut(s) 594, 996
HpyCH4IV ACGT 1 cut(s) 766
HpyF10VI GCNNNNNNNGC 2 cut(s) 828, 923
HpyF3I CTNAG 2 cut(s) 85, 650
HpySE526I ACGT 1 cut(s) 766
Hsp92II CATG 2 cut(s) 856, 956
HspAI GCGC 1 cut(s) 829
Kpn2I TCCGGA 1 cut(s) 999
Kzo9I GATC 5 cut(s) 63, 237, 400, 511, 544
LmnI GCTCC 1 cut(s) 275
Lsp1109I GCAGC 2 cut(s) 280, 583
MaeI CTAG 2 cut(s) 38, 522
MaeII ACGT 1 cut(s) 766
MaeIII GTNAC 5 cut(s) 79, 223, 251, 385, 782
MalI GATC 5 cut(s) 65, 239, 402, 513, 546
MboI GATC 5 cut(s) 63, 237, 400, 511, 544
MboII GAAGA 4 cut(s) 34, 340, 885, 929
MhlI GDGCHC 2 cut(s) 280, 701
MlsI TGGCCA 1 cut(s) 138
MluCI AATT 7 cut(s) 4, 96, 195, 441, 502, 645, 680
MluNI TGGCCA 1 cut(s) 138
MlyI GAGTC 1 cut(s) 1049
MmeI TCCRAC 2 cut(s) 478, 951
MnlI CCTC 5 cut(s) 40, 141, 240, 967, 1030
Mox20I TGGCCA 1 cut(s) 138
MroI TCCGGA 1 cut(s) 999
MscI TGGCCA 1 cut(s) 138
MseI TTAA 3 cut(s) 194, 198, 683
MslI CAYNNNNRTG 2 cut(s) 322, 671
Msp20I TGGCCA 1 cut(s) 138
MspA1I CMGCKG 1 cut(s) 322
MspI CCGG 2 cut(s) 555, 1000
MspR9I CCNGG 3 cut(s) 135, 267, 555
MvaI CCWGG 2 cut(s) 135, 267
MwoI GCNNNNNNNGC 2 cut(s) 828, 923
NciI CCSGG 1 cut(s) 555
NdeII GATC 5 cut(s) 63, 237, 400, 511, 544
NlaIII CATG 2 cut(s) 856, 956
NlaIV GGNNCC 2 cut(s) 264, 998
NmuCI GTSAC 3 cut(s) 79, 385, 782
OliI CACNNNNGTG 2 cut(s) 322, 671
PacI TTAATTAA 1 cut(s) 198
PcsI WCGNNNNNNNCGW 1 cut(s) 72
PfeI GAWTC 2 cut(s) 468, 977
PfoI TCCNGGA 1 cut(s) 265
PkrI GCNGC 2 cut(s) 295, 573
PleI GAGTC 1 cut(s) 1048
PpsI GAGTC 1 cut(s) 1048
PpuMI RGGWCCY 1 cut(s) 263
PshBI ATTAAT 1 cut(s) 194
Psp5II RGGWCCY 1 cut(s) 263
Psp6I CCWGG 2 cut(s) 133, 265
PspGI CCWGG 2 cut(s) 133, 265
PspN4I GGNNCC 2 cut(s) 264, 998
PspPI GGNCC 1 cut(s) 263
PspPPI RGGWCCY 1 cut(s) 263
PstI CTGCAG 1 cut(s) 709
PvuII CAGCTG 1 cut(s) 322
RsaI GTAC 1 cut(s) 798
RsaNI GTAC 1 cut(s) 797
RseI CAYNNNNRTG 2 cut(s) 322, 671
SaqAI TTAA 3 cut(s) 194, 198, 683
SatI GCNGC 2 cut(s) 294, 572
Sau3AI GATC 5 cut(s) 63, 237, 400, 511, 544
Sau96I GGNCC 1 cut(s) 263
SchI GAGTC 1 cut(s) 1049
ScrFI CCNGG 3 cut(s) 135, 267, 555
SduI GDGCHC 2 cut(s) 280, 701
SfcI CTRYAG 2 cut(s) 705, 725
SinI GGWCC 1 cut(s) 263
SmiMI CAYNNNNRTG 2 cut(s) 322, 671
SmlI CTYRAG 1 cut(s) 231
SmoI CTYRAG 1 cut(s) 231
Sse9I AATT 7 cut(s) 4, 96, 195, 441, 502, 645, 680
SsiI CCGC 1 cut(s) 395
SspMI CTAG 2 cut(s) 38, 522
StyD4I CCNGG 3 cut(s) 133, 265, 553
StyI CCWWGG 2 cut(s) 139, 258
TaaI ACNGT 2 cut(s) 594, 996
TaiI ACGT 1 cut(s) 769
TaqI TCGA 2 cut(s) 240, 466
TasI AATT 7 cut(s) 4, 96, 195, 441, 502, 645, 680
TatI WGTACW 1 cut(s) 796
TfiI GAWTC 2 cut(s) 468, 977
Tru1I TTAA 3 cut(s) 194, 198, 683
Tru9I TTAA 3 cut(s) 194, 198, 683
TscAI CASTG 1 cut(s) 673
TseFI GTSAC 3 cut(s) 79, 385, 782
TseI GCWGC 2 cut(s) 293, 571
Tsp45I GTSAC 3 cut(s) 79, 385, 782
TspDTI ATGAA 4 cut(s) 17, 35, 860, 1023
TspRI CASTG 1 cut(s) 673
VneI GTGCAC 1 cut(s) 697
VpaK11BI GGWCC 1 cut(s) 263
VspI ATTAAT 1 cut(s) 194
XagI CCTNNNNNAGG 1 cut(s) 138
XapI RAATTY 2 cut(s) 4, 645
XspI CTAG 2 cut(s) 38, 522
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.