Rorug01G0367800

tRNA (guanine(26)-N(2))-dimethyltransferase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0009588
Physical Location & Seq
Reverse (-)
48309524 .. 48309832
309 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0367800.1

Sequence Viewer

Length: 309 bp
ATGAATCAGTTGGGAGTCAAGATTAGGCATACTGGAGCTAACTTGTTAGAATGGCATAAGAAAGAAGTCATGCAGACTAAACTTGAGATGAGGGTGATCCAAGAGAAAATGAAGGACTTAATGTCACACCCTTATTCATCACAACAATATGAAGAACAAAGGCAGCTACATGTCAAATACAGTGCTCTCTTAGCCCAGGAAGAGACTTATTGGAGACAAAGGTCCAAGGCTTTCTGGTTGAAAGATGGAGGCAAGAATACAACTTTCTTTCATAGGAGGCATCTAATAGAAGAGTTAAGAATCAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TRM

Protein Analysis

102

Amino Acids

12.5

Weight (kDa)

9.87

Isoelectric Point (pI)

56.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 91
AflIII ACRYGT 1 cut(s) 169
AgsI TTSAA 1 cut(s) 241
AhdI GACNNNNNGTC 1 cut(s) 121
AjnI CCWGG 1 cut(s) 195
AluBI AGCT 2 cut(s) 38, 166
AluI AGCT 2 cut(s) 38, 166
Alw21I GWGCWC 1 cut(s) 187
Alw26I GTCTC 2 cut(s) 197, 208
AlwI GGATC 1 cut(s) 91
ApeKI GCWGC 1 cut(s) 163
AspS9I GGNCC 1 cut(s) 222
AsuHPI GGTGA 1 cut(s) 106
AvaII GGWCC 1 cut(s) 222
Bbv12I GWGCWC 1 cut(s) 187
BbvI GCAGC 1 cut(s) 175
BccI CCATC 1 cut(s) 239
BciT130I CCWGG 1 cut(s) 197
BcoDI GTCTC 2 cut(s) 197, 208
BisI GCNGC 1 cut(s) 164
BlsI GCNGC 1 cut(s) 165
Bme1390I CCNGG 1 cut(s) 197
Bme18I GGWCC 1 cut(s) 222
BmeRI GACNNNNNGTC 1 cut(s) 121
BmgT120I GGNCC 1 cut(s) 222
BmrFI CCNGG 1 cut(s) 197
BmsI GCATC 1 cut(s) 289
BoxI GACNNNNGTC 1 cut(s) 220
BpmI CTGGAG 1 cut(s) 54
BpuEI CTTGAG 1 cut(s) 104
BsaJI CCNNGG 2 cut(s) 195, 225
Bse1I ACTGG 1 cut(s) 37
BseBI CCWGG 1 cut(s) 197
BseDI CCNNGG 2 cut(s) 195, 225
BseNI ACTGG 1 cut(s) 37
BseXI GCAGC 1 cut(s) 175
BsiHKAI GWGCWC 1 cut(s) 187
BsmAI GTCTC 2 cut(s) 197, 208
Bsp1286I GDGCHC 1 cut(s) 187
Bsp143I GATC 1 cut(s) 96
BspPI GGATC 1 cut(s) 91
BsrI ACTGG 1 cut(s) 37
BssECI CCNNGG 2 cut(s) 195, 225
BssMI GATC 1 cut(s) 96
BssT1I CCWWGG 1 cut(s) 225
Bst2UI CCWGG 1 cut(s) 197
Bst4CI ACNGT 1 cut(s) 182
Bst6I CTCTTC 2 cut(s) 195, 285
BstDEI CTNAG 1 cut(s) 190
BstKTI GATC 1 cut(s) 99
BstMAI GTCTC 2 cut(s) 197, 208
BstMBI GATC 1 cut(s) 96
BstMWI GCNNNNNNNGC 1 cut(s) 191
BstNI CCWGG 1 cut(s) 197
BstNSI RCATGY 1 cut(s) 173
BstPAI GACNNNNGTC 1 cut(s) 220
BstSCI CCNGG 1 cut(s) 195
BstV1I GCAGC 1 cut(s) 175
BtsIMutI CAGTG 1 cut(s) 187
Cfr13I GGNCC 1 cut(s) 222
CviAII CATG 2 cut(s) 70, 170
CviJI RGCY 4 cut(s) 38, 166, 194, 230
CviKI_1 RGCY 4 cut(s) 38, 166, 194, 230
DdeI CTNAG 1 cut(s) 190
DpnI GATC 1 cut(s) 98
DpnII GATC 1 cut(s) 96
DriI GACNNNNNGTC 1 cut(s) 121
Eam1104I CTCTTC 2 cut(s) 195, 285
Eam1105I GACNNNNNGTC 1 cut(s) 121
EarI CTCTTC 2 cut(s) 195, 285
Eco130I CCWWGG 1 cut(s) 225
Eco47I GGWCC 1 cut(s) 222
EcoRII CCWGG 1 cut(s) 195
EcoT14I CCWWGG 1 cut(s) 225
ErhI CCWWGG 1 cut(s) 225
FaeI CATG 2 cut(s) 73, 173
FaiI YATR 6 cut(s) 30, 57, 71, 150, 171, 273
FatI CATG 2 cut(s) 69, 169
Fnu4HI GCNGC 1 cut(s) 164
Fsp4HI GCNGC 1 cut(s) 164
GluI GCNGC 1 cut(s) 164
GsuI CTGGAG 1 cut(s) 54
Hin1II CATG 2 cut(s) 73, 173
HinfI GANTC 3 cut(s) 4, 15, 300
HphI GGTGA 1 cut(s) 106
Hpy188I TCNGA 1 cut(s) 305
Hpy188III TCNNGA 1 cut(s) 19
HpyAV CCTTC 1 cut(s) 106
HpyCH4III ACNGT 1 cut(s) 182
HpyCH4V TGCA 1 cut(s) 73
HpyF10VI GCNNNNNNNGC 1 cut(s) 191
HpyF3I CTNAG 1 cut(s) 190
Hsp92II CATG 2 cut(s) 73, 173
Kzo9I GATC 1 cut(s) 96
LmnI GCTCC 1 cut(s) 35
LpnPI CCDG 4 cut(s) 18, 182, 209, 220
Lsp1109I GCAGC 1 cut(s) 175
LweI GCATC 1 cut(s) 289
MaeIII GTNAC 1 cut(s) 123
MalI GATC 1 cut(s) 98
MboI GATC 1 cut(s) 96
MboII GAAGA 3 cut(s) 164, 212, 302
MhlI GDGCHC 1 cut(s) 187
MlyI GAGTC 1 cut(s) 24
MnlI CCTC 3 cut(s) 84, 242, 270
MseI TTAA 2 cut(s) 119, 296
MspR9I CCNGG 1 cut(s) 197
MvaI CCWGG 1 cut(s) 197
MwoI GCNNNNNNNGC 1 cut(s) 191
NdeII GATC 1 cut(s) 96
NlaIII CATG 2 cut(s) 73, 173
NmuCI GTSAC 1 cut(s) 123
NspI RCATGY 1 cut(s) 173
PciI ACATGT 1 cut(s) 169
PfeI GAWTC 2 cut(s) 4, 300
PkrI GCNGC 1 cut(s) 165
PleI GAGTC 1 cut(s) 23
PpsI GAGTC 1 cut(s) 23
PscI ACATGT 1 cut(s) 169
PshAI GACNNNNGTC 1 cut(s) 220
Psp6I CCWGG 1 cut(s) 195
PspGI CCWGG 1 cut(s) 195
PspPI GGNCC 1 cut(s) 222
SaqAI TTAA 2 cut(s) 119, 296
SatI GCNGC 1 cut(s) 164
Sau3AI GATC 1 cut(s) 96
Sau96I GGNCC 1 cut(s) 222
SchI GAGTC 1 cut(s) 24
ScrFI CCNGG 1 cut(s) 197
SduI GDGCHC 1 cut(s) 187
SetI ASST 3 cut(s) 40, 168, 224
SfaNI GCATC 1 cut(s) 289
SinI GGWCC 1 cut(s) 222
SmlI CTYRAG 1 cut(s) 83
SmoI CTYRAG 1 cut(s) 83
StyD4I CCNGG 1 cut(s) 195
StyI CCWWGG 1 cut(s) 225
TaaI ACNGT 1 cut(s) 182
TfiI GAWTC 2 cut(s) 4, 300
Tru1I TTAA 2 cut(s) 119, 296
Tru9I TTAA 2 cut(s) 119, 296
TscAI CASTG 1 cut(s) 187
TseFI GTSAC 1 cut(s) 123
TseI GCWGC 1 cut(s) 163
Tsp45I GTSAC 1 cut(s) 123
TspDTI ATGAA 5 cut(s) 17, 125, 126, 165, 260
TspRI CASTG 1 cut(s) 187
VpaK11BI GGWCC 1 cut(s) 222
XceI RCATGY 1 cut(s) 173
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.