Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0007377

Physical Location & Seq

Genomic Coordinates Reverse (-)

51444010 .. 51444528

Gene Structure 519 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0408400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGGTAGACCCATCGGTGTTTGTTGGGGATTGGCCGGAAGATTTCATTGGTTCCCTTCAGCGGCCGACCAGGGATGGCGGAGGTCGGAGGTTGAGGTCTTCTCGGATCGTGGACAGGGGAGAGGTTGATCGTGAAGATCTGGTCCGAGGTGCCTCTGATAACGGTCGGGACAGCGACGTGCGTGTTCTCGATGGCGGAGGCCTTGCAGCGGCGACGAGGGTTCACTGTGCTGGTGGCCGGAAAAATGGTGTTGGGGTGCCCATAGCAGATGTCAAGCATTGGGCTCTTTGGGCCTTAAATTGGGTTATGAGTTGTTGGTCAAGATTCTGGGGTCTAGAGCTGTCGGCCCTGAGATGGCTTTTTGTTCATGGTTGGGGTTGTTGGGCTCGAGTTTGGAAGTTTGGTTCTTTGTGGGCCGGATTTTGGGCTGCAAGGGTCTTGTGCTGGGTTGAGGTTGATTGGAACTTCTCAATTGGGAAGGCTCTGATGAATGAAGACGGAATGGATGGTGATATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016603 GO:0016740 GO:0016746 GO:0016755 GO:0017186 GO:0018193 GO:0018199 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glu_cyclase_2

Protein Analysis

172

Amino Acids

19.28

Weight (kDa)

6.29

Isoelectric Point (pI)

32.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007377)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25720 AT4G25720 AT4G25720 AT4G25720 AT4G25720
fragaria_vesca	FvH4_7g30250 FvH4_7g30250 FvH4_7g30250 FvH4_7g30250 FvH4_7g30250
malus_domestica	MD01G1208600.v1.1 MD14G1086700.v1.1
prunus_persica	Prupe.2G301200_v2.0.a1
pyrus_communis	pycom01g21920
rosa_chinensis	RchiOBHm_Chr1g0378381
rosa_laevigata	RLG00000026439
rosa_multiflora	Rmu_sc0013545.1_g000011
rosa_roxburghii	Rroxscaffold_4G00280490
rosa_rugosa	Rorug01G0408300 Rorug01G0408400
rosa_samantha	Rh1AG429900 Rh1BG387600 Rh1CG401100 Rh1DG418700
rosa_wichuraiana	Rw1G037620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	149, 256
AccI	GTMKAC	1 cut(s)	6
AciI	CCGC	4 cut(s)	61, 78, 195, 209
AclWI	GGATC	1 cut(s)	113
AcoI	YGGCCR	3 cut(s)	32, 62, 235
AcuI	CTGAAG	1 cut(s)	41
AfiI	CCNNNNNNNGG	5 cut(s)	60, 208, 300, 354, 423
AjiI	CACGTC	1 cut(s)	178
AjnI	CCWGG	1 cut(s)	68
AjuI	GAANNNNNNNTTGG	2 cut(s)	30, 62
AloI	GAACNNNNNNTCC	2 cut(s)	388, 420
AluBI	AGCT	1 cut(s)	340
AluI	AGCT	1 cut(s)	340
AlwI	GGATC	1 cut(s)	113
Ama87I	CYCGRG	1 cut(s)	387
AoxI	GGCC	7 cut(s)	32, 62, 199, 235, 291, 345, 414
ApeKI	GCWGC	2 cut(s)	206, 428
AspS9I	GGNCC	4 cut(s)	142, 291, 346, 414
AvaI	CYCGRG	1 cut(s)	387
AvaII	GGWCC	1 cut(s)	142
BaeGI	GKGCMC	1 cut(s)	261
BanI	GGYRCC	2 cut(s)	149, 256
BanII	GRGCYC	2 cut(s)	286, 388
BbsI	GAAGAC	2 cut(s)	90, 501
BbvI	GCAGC	2 cut(s)	218, 415
BccI	CCATC	5 cut(s)	19, 68, 185, 348, 500
BciT130I	CCWGG	1 cut(s)	70
BfaI	CTAG	1 cut(s)	335
BglII	AGATCT	1 cut(s)	136
BisI	GCNGC	4 cut(s)	62, 207, 210, 429
BlsI	GCNGC	4 cut(s)	63, 208, 211, 430
Bme1390I	CCNGG	1 cut(s)	70
Bme18I	GGWCC	1 cut(s)	142
BmeT110I	CYCGRG	1 cut(s)	387
BmgBI	CACGTC	1 cut(s)	178
BmgT120I	GGNCC	4 cut(s)	142, 291, 346, 414
BmiI	GGNNCC	3 cut(s)	52, 151, 258
BmrFI	CCNGG	1 cut(s)	70
BpiI	GAAGAC	2 cut(s)	90, 501
BplI	GAGNNNNNCTC	2 cut(s)	85, 117
BsaJI	CCNNGG	2 cut(s)	69, 145
Bsc4I	CCNNNNNNNGG	5 cut(s)	60, 208, 300, 354, 423
BseBI	CCWGG	1 cut(s)	70
BseDI	CCNNGG	2 cut(s)	69, 145
BseGI	GGATG	2 cut(s)	79, 511
BseLI	CCNNNNNNNGG	5 cut(s)	60, 208, 300, 354, 423
BseMII	CTCAG	1 cut(s)	341
BseSI	GKGCMC	1 cut(s)	261
BseX3I	CGGCCG	1 cut(s)	62
BseXI	GCAGC	2 cut(s)	218, 415
BseYI	CCCAGC	1 cut(s)	444
Bsh1285I	CGRYCG	2 cut(s)	65, 166
BshFI	GGCC	7 cut(s)	34, 64, 201, 237, 293, 347, 416
BshNI	GGYRCC	2 cut(s)	149, 256
BsiEI	CGRYCG	2 cut(s)	65, 166
BsiHKCI	CYCGRG	1 cut(s)	387
BsiSI	CCGG	3 cut(s)	35, 238, 417
BslFI	GGGAC	1 cut(s)	182
BslI	CCNNNNNNNGG	5 cut(s)	60, 208, 300, 354, 423
BsmFI	GGGAC	1 cut(s)	182
BsnI	GGCC	7 cut(s)	34, 64, 201, 237, 293, 347, 416
BsoBI	CYCGRG	1 cut(s)	387
Bsp1286I	GDGCHC	3 cut(s)	261, 286, 388
Bsp143I	GATC	3 cut(s)	105, 127, 136
BspACI	CCGC	4 cut(s)	61, 78, 195, 209
BspANI	GGCC	7 cut(s)	34, 64, 201, 237, 293, 347, 416
BspCNI	CTCAG	1 cut(s)	342
BspLI	GGNNCC	3 cut(s)	52, 151, 258
BspPI	GGATC	1 cut(s)	113
BspT107I	GGYRCC	2 cut(s)	149, 256
BssECI	CCNNGG	2 cut(s)	69, 145
BssMI	GATC	3 cut(s)	105, 127, 136
Bst2UI	CCWGG	1 cut(s)	70
Bst4CI	ACNGT	2 cut(s)	164, 227
BstDEI	CTNAG	1 cut(s)	350
BstF5I	GGATG	2 cut(s)	79, 511
BstKTI	GATC	3 cut(s)	108, 130, 139
BstMBI	GATC	3 cut(s)	105, 127, 136
BstMCI	CGRYCG	2 cut(s)	65, 166
BstMWI	GCNNNNNNNGC	1 cut(s)	290
BstNI	CCWGG	1 cut(s)	70
BstSCI	CCNGG	1 cut(s)	68
BstSLI	GKGCMC	1 cut(s)	261
BstV1I	GCAGC	2 cut(s)	218, 415
BstV2I	GAAGAC	2 cut(s)	90, 501
BstX2I	RGATCY	1 cut(s)	136
BstYI	RGATCY	1 cut(s)	136
BstZI	CGGCCG	1 cut(s)	62
BsuRI	GGCC	7 cut(s)	34, 64, 201, 237, 293, 347, 416
BtrI	CACGTC	1 cut(s)	178
BtsCI	GGATG	2 cut(s)	79, 511
BtsIMutI	CAGTG	1 cut(s)	223
Cfr13I	GGNCC	4 cut(s)	142, 291, 346, 414
CviAII	CATG	1 cut(s)	368
DdeI	CTNAG	1 cut(s)	350
DpnI	GATC	3 cut(s)	107, 129, 138
DpnII	GATC	3 cut(s)	105, 127, 136
EaeI	YGGCCR	3 cut(s)	32, 62, 235
EagI	CGGCCG	1 cut(s)	62
EciI	GGCGGA	2 cut(s)	93, 210
EclXI	CGGCCG	1 cut(s)	62
Eco147I	AGGCCT	1 cut(s)	201
Eco24I	GRGCYC	2 cut(s)	286, 388
Eco47I	GGWCC	1 cut(s)	142
Eco52I	CGGCCG	1 cut(s)	62
Eco57I	CTGAAG	1 cut(s)	41
Eco88I	CYCGRG	1 cut(s)	387
EcoRII	CCWGG	1 cut(s)	68
EcoT38I	GRGCYC	2 cut(s)	286, 388
FaeI	CATG	1 cut(s)	371
FaiI	YATR	5 cut(s)	263, 308, 369, 515, 517
FaqI	GGGAC	1 cut(s)	182
FatI	CATG	1 cut(s)	367
FblI	GTMKAC	1 cut(s)	6
Fnu4HI	GCNGC	4 cut(s)	62, 207, 210, 429
FokI	GGATG	1 cut(s)	86
FriOI	GRGCYC	2 cut(s)	286, 388
Fsp4HI	GCNGC	4 cut(s)	62, 207, 210, 429
FspBI	CTAG	1 cut(s)	335
GluI	GCNGC	4 cut(s)	62, 207, 210, 429
GsaI	CCCAGC	1 cut(s)	448
HaeIII	GGCC	7 cut(s)	34, 64, 201, 237, 293, 347, 416
HapII	CCGG	3 cut(s)	35, 238, 417
Hin1II	CATG	1 cut(s)	371
HinfI	GANTC	1 cut(s)	324
HpaII	CCGG	3 cut(s)	35, 238, 417
Hpy166II	GTNNAC	3 cut(s)	7, 112, 223
Hpy188I	TCNGA	5 cut(s)	87, 105, 146, 157, 486
Hpy188III	TCNNGA	5 cut(s)	131, 167, 188, 321, 335
Hpy8I	GTNNAC	3 cut(s)	7, 112, 223
Hpy99I	CGWCG	2 cut(s)	179, 217
HpyAV	CCTTC	2 cut(s)	65, 472
HpyCH4III	ACNGT	2 cut(s)	164, 227
HpyCH4IV	ACGT	1 cut(s)	177
HpyCH4V	TGCA	2 cut(s)	206, 431
HpyF10VI	GCNNNNNNNGC	1 cut(s)	290
HpyF3I	CTNAG	1 cut(s)	350
HpySE526I	ACGT	1 cut(s)	177
Hsp92II	CATG	1 cut(s)	371
Kzo9I	GATC	3 cut(s)	105, 127, 136
Lsp1109I	GCAGC	2 cut(s)	218, 415
MaeI	CTAG	1 cut(s)	335
MaeII	ACGT	1 cut(s)	177
MalI	GATC	3 cut(s)	107, 129, 138
MboI	GATC	3 cut(s)	105, 127, 136
MboII	GAAGA	4 cut(s)	50, 90, 146, 506
MfeI	CAATTG	1 cut(s)	471
MflI	RGATCY	1 cut(s)	136
MhlI	GDGCHC	3 cut(s)	261, 286, 388
MluCI	AATT	2 cut(s)	298, 471
MmeI	TCCRAC	1 cut(s)	65
MnlI	CCTC	9 cut(s)	74, 81, 87, 115, 140, 163, 191, 210, 445
MseI	TTAA	1 cut(s)	296
MspA1I	CMGCKG	2 cut(s)	61, 209
MspI	CCGG	3 cut(s)	35, 238, 417
MspR9I	CCNGG	1 cut(s)	70
MunI	CAATTG	1 cut(s)	471
MvaI	CCWGG	1 cut(s)	70
MwoI	GCNNNNNNNGC	1 cut(s)	290
NdeII	GATC	3 cut(s)	105, 127, 136
NlaIII	CATG	1 cut(s)	371
NlaIV	GGNNCC	3 cut(s)	52, 151, 258
PaeR7I	CTCGAG	1 cut(s)	387
PceI	AGGCCT	1 cut(s)	201
PfeI	GAWTC	1 cut(s)	324
PkrI	GCNGC	4 cut(s)	63, 208, 211, 430
Psp6I	CCWGG	1 cut(s)	68
PspFI	CCCAGC	1 cut(s)	444
PspGI	CCWGG	1 cut(s)	68
PspN4I	GGNNCC	3 cut(s)	52, 151, 258
PspPI	GGNCC	4 cut(s)	142, 291, 346, 414
PspXI	VCTCGAGB	1 cut(s)	387
PsuI	RGATCY	1 cut(s)	136
SaqAI	TTAA	1 cut(s)	296
SatI	GCNGC	4 cut(s)	62, 207, 210, 429
Sau3AI	GATC	3 cut(s)	105, 127, 136
Sau96I	GGNCC	4 cut(s)	142, 291, 346, 414
ScrFI	CCNGG	1 cut(s)	70
SduI	GDGCHC	3 cut(s)	261, 286, 388
SetI	ASST	8 cut(s)	85, 92, 98, 126, 151, 180, 342, 456
Sfr274I	CTCGAG	1 cut(s)	387
SinI	GGWCC	1 cut(s)	142
SlaI	CTCGAG	1 cut(s)	387
SmlI	CTYRAG	1 cut(s)	387
SmoI	CTYRAG	1 cut(s)	387
Sse9I	AATT	2 cut(s)	298, 471
SseBI	AGGCCT	1 cut(s)	201
SsiI	CCGC	4 cut(s)	61, 78, 195, 209
SspMI	CTAG	1 cut(s)	335
StuI	AGGCCT	1 cut(s)	201
StyD4I	CCNGG	1 cut(s)	68
TaaI	ACNGT	2 cut(s)	164, 227
TaiI	ACGT	1 cut(s)	180
TaqI	TCGA	2 cut(s)	189, 388
TasI	AATT	2 cut(s)	298, 471
TauI	GCSGC	2 cut(s)	64, 212
TfiI	GAWTC	1 cut(s)	324
Tru1I	TTAA	1 cut(s)	296
Tru9I	TTAA	1 cut(s)	296
TscAI	CASTG	1 cut(s)	230
TseI	GCWGC	2 cut(s)	206, 428
TspDTI	ATGAA	4 cut(s)	34, 356, 503, 507
TspGWI	ACGGA	1 cut(s)	513
TspRI	CASTG	1 cut(s)	230
VpaK11BI	GGWCC	1 cut(s)	142
XbaI	TCTAGA	1 cut(s)	334
XhoI	CTCGAG	1 cut(s)	387
XmiI	GTMKAC	1 cut(s)	6
XspI	CTAG	1 cut(s)	335

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.