Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0012565

Physical Location & Seq

Genomic Coordinates Reverse (-)

10961358 .. 10962347

Gene Structure 990 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0127200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGGCTGGTAGAGATATCCCAGATGAATTGATAGAGATAATCCTAAAGCACCTTGACCTTACAAACGAAACTGATATTAATCGATTCCGTGCCGTCTGTCAATCATGGAGGTCTTCTATTCCTAGATTTGAGAGAAAGCTCCTATTACCCAACAGATTTGAGATAGAATCTGACTCCTGGACTCCTTGTTTCTTACCCTCCAAGACCGAGAGCATAGTCTATCATATTACACCACTTGCCGAAGATCCCGATCGAAAGCAAAGGGGCTGGCTAATTAGGTTAGATAGTGACGGTAAGTTAGTCGATCCATTATCCCAAACCGACTACAAAGGAAGGACACCATTCCGGCCAAAGGTAATAAACTTTCTTGACTTTCGCGTATTTGAATTGGCAAGAACTTATTGTAGTGGCCACTGGAATAAGATGGCCGTGTCCGAGAACCTTGATGTCCCTGCGGTCATGATGTTGAGGGATAAAATATTGTATGGTGGAAAACTAGGTCTTCACGTCAGAGATGCAACCAAGCTCTACCTAAATCCGGATTATCCTGATGGTGTTGCCTTGAATAGAAAGACAAAGACTCCTGTTGATGATGTTATTTTTTATCAAGGAAAGTTTTATGCTGTCTCAGAGTCTGGGGGAGCTATAGTGATGGTTTCTTCATGTAATTTTAAAGAGGTATACGTAGCGTGGCCAATATGTAATTTGATAAGTTGTGACAAGAAGATGTATTTGGTCGAATCACTCGGGGAGTTGTTGTTAGTTGAGAGACGAGGGCCTAGATTCATCGGCGAAGGTGATTTGGTGGACAATGTGCTCAACAAGGAAGTTATATTCATGGTTTACAAGTTGGAAGAAAGGGAGCGATGGGTGAGGCGATGGGTGAAGATGAAAGATTCAGAATTAAGTGATCGAATATTGTTTGTGGCTGATGGTATCTTTAGCTTCTCTGTTTCTGCTAAAGAGTTCCCAGGATGCCGACACTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

329

Amino Acids

38.14

Weight (kDa)

7.56

Isoelectric Point (pI)

44.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	5 - 44	2.7e-06	F-box domain
Beta-prop_KIB1-4	PF03478	87 - 327	2.9e-23	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012565)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g15900
malus_domestica	MD02G1170800.v1.1 MD15G1282300.v1.1
prunus_persica	Prupe.7G134800_v2.0.a1
pyrus_communis	pycom02g13710 pycom02g13730 pycom15g24560 pycom15g24570
rosa_chinensis	RchiOBHm_Chr2g0105291
rosa_laevigata	RLG00000017413
rosa_multiflora	Rmu_sc0001407.1_g000012
rosa_roxburghii	Rroxscaffold_2G00138330
rosa_rugosa	Rorug02G0127200 Rorug02G0127300
rosa_samantha	Rh2AG177900 Rh2BG186300 Rh2CG182500 Rh2DG183900
rosa_wichuraiana	Rw2G013970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	681
AccII	CGCG	1 cut(s)	378
AccIII	TCCGGA	1 cut(s)	538
AciI	CCGC	1 cut(s)	455
AclWI	GGATC	2 cut(s)	239, 299
AcoI	YGGCCR	4 cut(s)	347, 409, 426, 692
AfiI	CCNNNNNNNGG	2 cut(s)	352, 538
AgsI	TTSAA	2 cut(s)	386, 565
AjiI	CACGTC	1 cut(s)	508
AjnI	CCWGG	2 cut(s)	176, 970
AjuI	GAANNNNNNNTTGG	2 cut(s)	716, 748
AluBI	AGCT	4 cut(s)	139, 526, 644, 945
AluI	AGCT	4 cut(s)	139, 526, 644, 945
Alw21I	GWGCWC	1 cut(s)	819
Alw26I	GTCTC	2 cut(s)	631, 763
AlwI	GGATC	2 cut(s)	239, 299
AlwNI	CAGNNNCTG	1 cut(s)	635
Ama87I	CYCGRG	1 cut(s)	746
Aor13HI	TCCGGA	1 cut(s)	538
AoxI	GGCC	5 cut(s)	347, 409, 426, 692, 776
AseI	ATTAAT	1 cut(s)	78
AspS9I	GGNCC	1 cut(s)	776
AsuHPI	GGTGA	3 cut(s)	809, 883, 895
AvaI	CYCGRG	1 cut(s)	746
BalI	TGGCCA	2 cut(s)	411, 694
BbsI	GAAGAC	2 cut(s)	105, 494
Bbv12I	GWGCWC	1 cut(s)	819
BccI	CCATC	6 cut(s)	418, 545, 646, 861, 873, 926
BceAI	ACGGC	2 cut(s)	77, 413
BciT130I	CCWGG	2 cut(s)	178, 972
BcoDI	GTCTC	2 cut(s)	631, 763
BfaI	CTAG	4 cut(s)	123, 497, 780, 988
BfmI	CTRYAG	1 cut(s)	645
Bme1390I	CCNGG	2 cut(s)	178, 972
BmeT110I	CYCGRG	1 cut(s)	746
BmgBI	CACGTC	1 cut(s)	508
BmgT120I	GGNCC	1 cut(s)	776
BmrFI	CCNGG	2 cut(s)	178, 972
BmsI	GCATC	2 cut(s)	505, 965
BpiI	GAAGAC	2 cut(s)	105, 494
Bsa29I	ATCGAT	1 cut(s)	82
BsaAI	YACGTR	1 cut(s)	685
BsaBI	GATNNNNATC	2 cut(s)	78, 249
BsaJI	CCNNGG	1 cut(s)	970
BsaWI	WCCGGW	1 cut(s)	538
BsaXI	ACNNNNNCTCC	6 cut(s)	565, 595, 633, 663, 743, 773
Bsc4I	CCNNNNNNNGG	2 cut(s)	352, 538
Bse1I	ACTGG	1 cut(s)	419
Bse8I	GATNNNNATC	2 cut(s)	78, 249
BseAI	TCCGGA	1 cut(s)	538
BseBI	CCWGG	2 cut(s)	178, 972
BseCI	ATCGAT	1 cut(s)	82
BseDI	CCNNGG	1 cut(s)	970
BseGI	GGATG	1 cut(s)	980
BseJI	GATNNNNATC	2 cut(s)	78, 249
BseLI	CCNNNNNNNGG	2 cut(s)	352, 538
BseMII	CTCAG	1 cut(s)	642
BseNI	ACTGG	1 cut(s)	419
Bsh1236I	CGCG	1 cut(s)	378
Bsh1285I	CGRYCG	1 cut(s)	253
BshFI	GGCC	5 cut(s)	349, 411, 428, 694, 778
BshVI	ATCGAT	1 cut(s)	82
BsiEI	CGRYCG	1 cut(s)	253
BsiHKAI	GWGCWC	1 cut(s)	819
BsiHKCI	CYCGRG	1 cut(s)	746
BsiSI	CCGG	2 cut(s)	346, 539
BslFI	GGGAC	1 cut(s)	434
BslI	CCNNNNNNNGG	2 cut(s)	352, 538
BsmAI	GTCTC	2 cut(s)	631, 763
BsmBI	CGTCTC	1 cut(s)	763
BsmFI	GGGAC	1 cut(s)	434
BsnI	GGCC	5 cut(s)	349, 411, 428, 694, 778
BsoBI	CYCGRG	1 cut(s)	746
Bsp1286I	GDGCHC	1 cut(s)	819
Bsp13I	TCCGGA	1 cut(s)	538
Bsp143I	GATC	4 cut(s)	244, 250, 304, 910
BspACI	CCGC	1 cut(s)	455
BspANI	GGCC	5 cut(s)	349, 411, 428, 694, 778
BspCNI	CTCAG	1 cut(s)	641
BspDI	ATCGAT	1 cut(s)	82
BspEI	TCCGGA	1 cut(s)	538
BspFNI	CGCG	1 cut(s)	378
BspHI	TCATGA	1 cut(s)	459
BspPI	GGATC	2 cut(s)	239, 299
BsrI	ACTGG	1 cut(s)	419
BssECI	CCNNGG	1 cut(s)	970
BssMI	GATC	4 cut(s)	244, 250, 304, 910
BssNAI	GTATAC	1 cut(s)	682
Bst1107I	GTATAC	1 cut(s)	682
Bst2UI	CCWGG	2 cut(s)	178, 972
Bst4CI	ACNGT	1 cut(s)	293
BstBAI	YACGTR	1 cut(s)	685
BstC8I	GCNNGC	1 cut(s)	269
BstDEI	CTNAG	1 cut(s)	628
BstF5I	GGATG	1 cut(s)	980
BstFNI	CGCG	1 cut(s)	378
BstKTI	GATC	4 cut(s)	247, 253, 307, 913
BstMAI	GTCTC	2 cut(s)	631, 763
BstMBI	GATC	4 cut(s)	244, 250, 304, 910
BstMCI	CGRYCG	1 cut(s)	253
BstNI	CCWGG	2 cut(s)	178, 972
BstSCI	CCNGG	2 cut(s)	176, 970
BstSFI	CTRYAG	1 cut(s)	645
BstSNI	TACGTA	1 cut(s)	685
BstUI	CGCG	1 cut(s)	378
BstV2I	GAAGAC	2 cut(s)	105, 494
BstX2I	RGATCY	1 cut(s)	244
BstYI	RGATCY	1 cut(s)	244
BstZ17I	GTATAC	1 cut(s)	682
Bsu15I	ATCGAT	1 cut(s)	82
BsuRI	GGCC	5 cut(s)	349, 411, 428, 694, 778
BsuTUI	ATCGAT	1 cut(s)	82
BtgZI	GCGATG	2 cut(s)	880, 892
BtrI	CACGTC	1 cut(s)	508
BtsCI	GGATG	1 cut(s)	980
BtsIMutI	CAGTG	1 cut(s)	412
Cac8I	GCNNGC	1 cut(s)	269
CaiI	CAGNNNCTG	1 cut(s)	635
CciI	TCATGA	1 cut(s)	459
Cfr13I	GGNCC	1 cut(s)	776
ClaI	ATCGAT	1 cut(s)	82
CviAII	CATG	4 cut(s)	105, 460, 663, 838
DdeI	CTNAG	1 cut(s)	628
DpnI	GATC	4 cut(s)	246, 252, 306, 912
DpnII	GATC	4 cut(s)	244, 250, 304, 910
DraI	TTTAAA	1 cut(s)	673
EaeI	YGGCCR	4 cut(s)	347, 409, 426, 692
Eco105I	TACGTA	1 cut(s)	685
Eco32I	GATATC	1 cut(s)	16
Eco88I	CYCGRG	1 cut(s)	746
EcoO109I	RGGNCCY	1 cut(s)	776
EcoRII	CCWGG	2 cut(s)	176, 970
EcoRV	GATATC	1 cut(s)	16
Esp3I	CGTCTC	1 cut(s)	763
FaeI	CATG	4 cut(s)	108, 463, 666, 841
FaqI	GGGAC	1 cut(s)	434
FatI	CATG	4 cut(s)	104, 459, 662, 837
FblI	GTMKAC	1 cut(s)	681
FspBI	CTAG	4 cut(s)	123, 497, 780, 988
HaeIII	GGCC	5 cut(s)	349, 411, 428, 694, 778
HapII	CCGG	2 cut(s)	346, 539
Hin1II	CATG	4 cut(s)	108, 463, 666, 841
HinfI	GANTC	9 cut(s)	84, 167, 173, 181, 580, 632, 740, 783, 896
HpaII	CCGG	2 cut(s)	346, 539
HphI	GGTGA	3 cut(s)	809, 883, 895
Hpy166II	GTNNAC	3 cut(s)	682, 808, 844
Hpy188I	TCNGA	5 cut(s)	172, 436, 512, 631, 901
Hpy188III	TCNNGA	5 cut(s)	248, 368, 460, 539, 548
Hpy8I	GTNNAC	3 cut(s)	682, 808, 844
HpyAV	CCTTC	2 cut(s)	327, 788
HpyCH4III	ACNGT	1 cut(s)	293
HpyCH4IV	ACGT	2 cut(s)	507, 684
HpyCH4V	TGCA	1 cut(s)	518
HpyF3I	CTNAG	1 cut(s)	628
HpySE526I	ACGT	2 cut(s)	507, 684
Hsp92II	CATG	4 cut(s)	108, 463, 666, 841
Kpn2I	TCCGGA	1 cut(s)	538
Kzo9I	GATC	4 cut(s)	244, 250, 304, 910
LmnI	GCTCC	3 cut(s)	144, 641, 862
LweI	GCATC	2 cut(s)	505, 965
MaeI	CTAG	4 cut(s)	123, 497, 780, 988
MaeII	ACGT	2 cut(s)	507, 684
MaeIII	GTNAC	2 cut(s)	287, 716
MalI	GATC	4 cut(s)	246, 252, 306, 912
MboI	GATC	4 cut(s)	244, 250, 304, 910
MboII	GAAGA	7 cut(s)	105, 254, 494, 651, 736, 866, 898
MflI	RGATCY	1 cut(s)	244
MhlI	GDGCHC	1 cut(s)	819
MlsI	TGGCCA	2 cut(s)	411, 694
MluCI	AATT	6 cut(s)	26, 273, 386, 667, 703, 902
MluNI	TGGCCA	2 cut(s)	411, 694
MlyI	GAGTC	4 cut(s)	167, 175, 574, 641
MmeI	TCCRAC	1 cut(s)	831
MnlI	CCTC	6 cut(s)	102, 208, 462, 670, 767, 867
Mox20I	TGGCCA	2 cut(s)	411, 694
MroI	TCCGGA	1 cut(s)	538
MscI	TGGCCA	2 cut(s)	411, 694
MseI	TTAA	3 cut(s)	78, 672, 905
Msp20I	TGGCCA	2 cut(s)	411, 694
MspI	CCGG	2 cut(s)	346, 539
MspR9I	CCNGG	2 cut(s)	178, 972
MvaI	CCWGG	2 cut(s)	178, 972
MvnI	CGCG	1 cut(s)	378
NdeII	GATC	4 cut(s)	244, 250, 304, 910
NlaIII	CATG	4 cut(s)	108, 463, 666, 841
NmuCI	GTSAC	2 cut(s)	287, 716
PagI	TCATGA	1 cut(s)	459
PfeI	GAWTC	5 cut(s)	84, 167, 740, 783, 896
PfoI	TCCNGGA	1 cut(s)	176
Ple19I	CGATCG	1 cut(s)	253
PleI	GAGTC	4 cut(s)	167, 175, 574, 640
PpsI	GAGTC	4 cut(s)	167, 175, 574, 640
Ppu21I	YACGTR	1 cut(s)	685
PshBI	ATTAAT	1 cut(s)	78
Psp6I	CCWGG	2 cut(s)	176, 970
PspGI	CCWGG	2 cut(s)	176, 970
PspPI	GGNCC	1 cut(s)	776
PstNI	CAGNNNCTG	1 cut(s)	635
PsuI	RGATCY	1 cut(s)	244
PvuI	CGATCG	1 cut(s)	253
SaqAI	TTAA	3 cut(s)	78, 672, 905
Sau3AI	GATC	4 cut(s)	244, 250, 304, 910
Sau96I	GGNCC	1 cut(s)	776
SchI	GAGTC	4 cut(s)	167, 175, 574, 641
ScrFI	CCNGG	2 cut(s)	178, 972
SduI	GDGCHC	1 cut(s)	819
SfaNI	GCATC	2 cut(s)	505, 965
SfcI	CTRYAG	1 cut(s)	645
SnaBI	TACGTA	1 cut(s)	685
Sse9I	AATT	6 cut(s)	26, 273, 386, 667, 703, 902
SsiI	CCGC	1 cut(s)	455
SspI	AATATT	2 cut(s)	480, 918
SspMI	CTAG	4 cut(s)	123, 497, 780, 988
StyD4I	CCNGG	2 cut(s)	176, 970
TaaI	ACNGT	1 cut(s)	293
TaiI	ACGT	2 cut(s)	510, 687
TaqI	TCGA	5 cut(s)	82, 253, 303, 738, 913
TaqII	GACCGA	1 cut(s)	221
TasI	AATT	6 cut(s)	26, 273, 386, 667, 703, 902
TfiI	GAWTC	5 cut(s)	84, 167, 740, 783, 896
Tru1I	TTAA	3 cut(s)	78, 672, 905
Tru9I	TTAA	3 cut(s)	78, 672, 905
TscAI	CASTG	1 cut(s)	419
TseFI	GTSAC	2 cut(s)	287, 716
Tsp45I	GTSAC	2 cut(s)	287, 716
TspDTI	ATGAA	5 cut(s)	39, 651, 775, 826, 905
TspGWI	ACGGA	1 cut(s)	77
TspRI	CASTG	1 cut(s)	419
VspI	ATTAAT	1 cut(s)	78
XmiI	GTMKAC	1 cut(s)	681
XspI	CTAG	4 cut(s)	123, 497, 780, 988

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.