Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0005595

Physical Location & Seq

Genomic Coordinates Reverse (-)

15511314 .. 15515196

Gene Structure 3883 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0171700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGGCGGAATACATCTTGGGTTTCAACAAGGAAAGTTTGATTATAAGGCCATCTCCCAAGAAATCTCCTTTGTTTCTGAGAATGATAGTCTTAATGTTTGCAATGGTCTTTGGAGTTTACATCTGCTCGATATGTCTAAAGCAGATAAGTATCGAAACTGTGACTAAATTCGAAAGCATCAAAGTCATCGGAAGGCCTTCTCATGAAACCAAACTATTAGAAATTCCTTTTAAGCATTATCCGATGCCTGAAACTTTCAGCAGGGCTGAATGTGCACGTAATCCTGTGAGATTCTTTGCAATCTTATCGATGCAGAGATCAGGGAGTGGATGGTTCGAAAGCCTATTAAATAGTCACAAGAATGTTAGTTCTAATGGAGAGATATTTTCCGTTAAGGATAGGAGGGCAAATATTTCTTCAATTGTACAGACTCTAGATAAAGTTTACAATTTAGACTGGTTCAGTAGCGCTTCCAAGAATGAGTGCTCTGCAGCAACTGGCTTCAAGTGGATGCTTAATCAGGGATTAATGGAGCACCATGAAGAGATAGTAGAATACTTCAATCGCAGGGGGGTTTCTGCAATATTTCTCTTTCGAAGAAATTTATTGCGCAGAATGGTCTCTGTTCTTGCTAATTCTTATGATCGGTATGCTAAGCTATTGAATGGAACCCACAAGGCACATGTACATTCAGAAGAAGAGGCTGATACACTGTCAAAGTACAAGCCTACTATCAATTGCACGAAGTTGATTACCGATCTTAAAGAAATGGAGTCAACAGCTGCAAAGGCCATAGAATGCTTCAATAGCACCAGACACATGGTGTTGTATTATGAAGATATTGTCAAAAACCGCACTGTCTTAAAAGATGTTGAAGAGTTCCTGAGACTTCCTAAGAAGAGATTAAAAAGCCATCAGGTAAAAATACACAATGGACCATTGGCAGACCACATCAGAAACTGGGATGATGTCAAGAATACGCTAACAGGAACACCATATGAATATTTTCTCCACTCGGATTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009526 GO:0009536 GO:0009657 GO:0009658 GO:0009987 GO:0010020 GO:0016043 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043572 GO:0044422 GO:0044424 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048285 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MS_channel

Protein Analysis

341

Amino Acids

39.54

Weight (kDa)

9.26

Isoelectric Point (pI)

49.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005595)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10490 AT5G10490 AT5G10490
fragaria_vesca	FvH4_1g19670 FvH4_1g19670 FvH4_1g19670 FvH4_1g19670 FvH4_1g19670 FvH4_1g19670 FvH4_1g19670 FvH4_1g19670
malus_domestica	MD15G1312300.v1.1
prunus_persica	Prupe.6G201500_v2.0.a1 Prupe.6G201500_v2.0.a1 Prupe.6G201500_v2.0.a1
pyrus_communis	pycom15g27600
rosa_chinensis	RchiOBHm_Chr2g0111221
rosa_laevigata	RLG00000017875
rosa_multiflora	Rmu_sc0003055.1_g000004
rosa_roxburghii	Rroxscaffold_2G00132610
rosa_rugosa	Rorug02G0171700 Rorug02G0171700 Rorug02G0171800
rosa_samantha	Rh2AG224800 Rh2BG236600 Rh2CG227800 Rh2DG232400
rosa_wichuraiana	Rw2G017360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	44
Acc16I	TGCGCA	1 cut(s)	611
AciI	CCGC	2 cut(s)	5, 853
AcsI	RAATTY	3 cut(s)	167, 222, 601
AdeI	CACNNNGTG	1 cut(s)	823
AfaI	GTAC	3 cut(s)	426, 687, 722
AfeI	AGCGCT	1 cut(s)	469
AflIII	ACRYGT	1 cut(s)	682
AgsI	TTSAA	7 cut(s)	25, 420, 505, 562, 664, 805, 875
AluBI	AGCT	2 cut(s)	658, 782
AluI	AGCT	2 cut(s)	658, 782
Alw21I	GWGCWC	3 cut(s)	277, 488, 537
Alw26I	GTCTC	2 cut(s)	625, 880
Alw44I	GTGCAC	1 cut(s)	273
AlwNI	CAGNNNCTG	2 cut(s)	497, 960
Aor51HI	AGCGCT	1 cut(s)	469
AoxI	GGCC	3 cut(s)	47, 194, 789
ApaLI	GTGCAC	1 cut(s)	273
ApeKI	GCWGC	2 cut(s)	491, 782
ApoI	RAATTY	3 cut(s)	167, 222, 601
AseI	ATTAAT	1 cut(s)	527
Asp700I	GAANNNNTTC	2 cut(s)	196, 1005
AspLEI	GCGC	2 cut(s)	470, 612
AspS9I	GGNCC	1 cut(s)	935
AsuII	TTCGAA	3 cut(s)	171, 336, 595
AvaII	GGWCC	1 cut(s)	935
BaeGI	GKGCMC	1 cut(s)	277
Bbv12I	GWGCWC	3 cut(s)	277, 488, 537
BbvI	GCAGC	2 cut(s)	503, 769
BccI	CCATC	3 cut(s)	58, 324, 921
BcgI	CGANNNNNNTGC	2 cut(s)	288, 322
BcoDI	GTCTC	2 cut(s)	625, 880
BfaI	CTAG	1 cut(s)	434
BfmI	CTRYAG	1 cut(s)	489
BfoI	RGCGCY	1 cut(s)	471
BisI	GCNGC	2 cut(s)	492, 783
BlpI	GCTNAGC	1 cut(s)	654
BlsI	GCNGC	2 cut(s)	493, 784
Bme18I	GGWCC	1 cut(s)	935
BmgT120I	GGNCC	1 cut(s)	935
BmiI	GGNNCC	1 cut(s)	670
BmrI	ACTGGG	1 cut(s)	970
BmsI	GCATC	4 cut(s)	186, 234, 300, 501
BmuI	ACTGGG	1 cut(s)	970
Bpu1102I	GCTNAGC	1 cut(s)	654
Bpu14I	TTCGAA	3 cut(s)	171, 336, 595
Bsa29I	ATCGAT	1 cut(s)	308
BsaAI	YACGTR	1 cut(s)	278
BsaBI	GATNNNNATC	1 cut(s)	149
BsaI	GGTCTC	1 cut(s)	625
Bse1I	ACTGG	3 cut(s)	461, 502, 965
Bse3DI	GCAATG	1 cut(s)	108
Bse8I	GATNNNNATC	1 cut(s)	149
BseCI	ATCGAT	1 cut(s)	308
BseGI	GGATG	3 cut(s)	335, 516, 970
BseJI	GATNNNNATC	1 cut(s)	149
BseMI	GCAATG	1 cut(s)	108
BseMII	CTCAG	2 cut(s)	68, 875
BseNI	ACTGG	3 cut(s)	461, 502, 965
BseSI	GKGCMC	1 cut(s)	277
BseXI	GCAGC	2 cut(s)	503, 769
BshFI	GGCC	3 cut(s)	49, 196, 791
BshVI	ATCGAT	1 cut(s)	308
BsiHKAI	GWGCWC	3 cut(s)	277, 488, 537
BsmAI	GTCTC	2 cut(s)	625, 880
BsmI	GAATGC	1 cut(s)	803
BsnI	GGCC	3 cut(s)	49, 196, 791
Bso31I	GGTCTC	1 cut(s)	625
Bsp119I	TTCGAA	3 cut(s)	171, 336, 595
Bsp1286I	GDGCHC	3 cut(s)	277, 488, 537
Bsp1407I	TGTACA	2 cut(s)	424, 685
Bsp143I	GATC	3 cut(s)	317, 643, 757
Bsp1720I	GCTNAGC	1 cut(s)	654
BspACI	CCGC	2 cut(s)	5, 853
BspANI	GGCC	3 cut(s)	49, 196, 791
BspCNI	CTCAG	2 cut(s)	69, 876
BspDI	ATCGAT	1 cut(s)	308
BspHI	TCATGA	1 cut(s)	202
BspLI	GGNNCC	1 cut(s)	670
BspMAI	CTGCAG	1 cut(s)	493
BspT104I	TTCGAA	3 cut(s)	171, 336, 595
BspTNI	GGTCTC	1 cut(s)	625
BsrDI	GCAATG	1 cut(s)	108
BsrGI	TGTACA	2 cut(s)	424, 685
BsrI	ACTGG	3 cut(s)	461, 502, 965
BssMI	GATC	3 cut(s)	317, 643, 757
Bst4CI	ACNGT	3 cut(s)	160, 714, 859
Bst6I	CTCTTC	4 cut(s)	537, 693, 870, 893
BstAUI	TGTACA	2 cut(s)	424, 685
BstBAI	YACGTR	1 cut(s)	278
BstBI	TTCGAA	3 cut(s)	171, 336, 595
BstDEI	CTNAG	4 cut(s)	77, 654, 884, 894
BstF5I	GGATG	3 cut(s)	335, 516, 970
BstH2I	RGCGCY	1 cut(s)	471
BstHHI	GCGC	2 cut(s)	470, 612
BstKTI	GATC	3 cut(s)	320, 646, 760
BstMAI	GTCTC	2 cut(s)	625, 880
BstMBI	GATC	3 cut(s)	317, 643, 757
BstMWI	GCNNNNNNNGC	3 cut(s)	272, 788, 807
BstNSI	RCATGY	1 cut(s)	686
BstSFI	CTRYAG	1 cut(s)	489
BstSLI	GKGCMC	1 cut(s)	277
BstV1I	GCAGC	2 cut(s)	503, 769
BstXI	CCANNNNNNTGG	1 cut(s)	820
Bsu15I	ATCGAT	1 cut(s)	308
BsuRI	GGCC	3 cut(s)	49, 196, 791
BsuTUI	ATCGAT	1 cut(s)	308
BtsCI	GGATG	3 cut(s)	335, 516, 970
BtsIMutI	CAGTG	2 cut(s)	710, 855
CaiI	CAGNNNCTG	2 cut(s)	497, 960
CciI	TCATGA	1 cut(s)	202
CfoI	GCGC	2 cut(s)	470, 612
Cfr13I	GGNCC	1 cut(s)	935
ClaI	ATCGAT	1 cut(s)	308
Csp6I	GTAC	3 cut(s)	425, 686, 721
CviAII	CATG	4 cut(s)	203, 539, 683, 820
CviQI	GTAC	3 cut(s)	425, 686, 721
DdeI	CTNAG	4 cut(s)	77, 654, 884, 894
DpnI	GATC	3 cut(s)	319, 645, 759
DpnII	GATC	3 cut(s)	317, 643, 757
DraIII	CACNNNGTG	1 cut(s)	823
Eam1104I	CTCTTC	4 cut(s)	537, 693, 870, 893
EarI	CTCTTC	4 cut(s)	537, 693, 870, 893
EciI	GGCGGA	1 cut(s)	20
Eco147I	AGGCCT	1 cut(s)	196
Eco31I	GGTCTC	1 cut(s)	625
Eco47I	GGWCC	1 cut(s)	935
Eco47III	AGCGCT	1 cut(s)	469
FaeI	CATG	4 cut(s)	206, 542, 686, 823
FatI	CATG	4 cut(s)	202, 538, 682, 819
FauNDI	CATATG	1 cut(s)	997
Fnu4HI	GCNGC	2 cut(s)	492, 783
FokI	GGATG	3 cut(s)	342, 523, 977
Fsp4HI	GCNGC	2 cut(s)	492, 783
FspBI	CTAG	1 cut(s)	434
FspI	TGCGCA	1 cut(s)	611
GlaI	GCGC	2 cut(s)	469, 611
GluI	GCNGC	2 cut(s)	492, 783
HaeII	RGCGCY	1 cut(s)	471
HaeIII	GGCC	3 cut(s)	49, 196, 791
HhaI	GCGC	2 cut(s)	470, 612
Hin1II	CATG	4 cut(s)	206, 542, 686, 823
Hin6I	GCGC	2 cut(s)	468, 610
HinP1I	GCGC	2 cut(s)	468, 610
HincII	GTYRAC	1 cut(s)	777
HindII	GTYRAC	1 cut(s)	777
HinfI	GANTC	3 cut(s)	291, 430, 773
Hpy166II	GTNNAC	4 cut(s)	118, 275, 445, 777
Hpy188I	TCNGA	6 cut(s)	78, 191, 243, 694, 956, 1018
Hpy188III	TCNNGA	4 cut(s)	203, 434, 883, 973
Hpy8I	GTNNAC	4 cut(s)	118, 275, 445, 777
HpyAV	CCTTC	2 cut(s)	186, 207
HpyCH4III	ACNGT	3 cut(s)	160, 714, 859
HpyCH4IV	ACGT	1 cut(s)	277
HpyCH4V	TGCA	8 cut(s)	101, 275, 299, 313, 491, 581, 741, 785
HpyF10VI	GCNNNNNNNGC	3 cut(s)	272, 788, 807
HpyF3I	CTNAG	4 cut(s)	77, 654, 884, 894
HpySE526I	ACGT	1 cut(s)	277
Hsp92II	CATG	4 cut(s)	206, 542, 686, 823
HspAI	GCGC	2 cut(s)	468, 610
Kzo9I	GATC	3 cut(s)	317, 643, 757
LmnI	GCTCC	1 cut(s)	532
Lsp1109I	GCAGC	2 cut(s)	503, 769
LweI	GCATC	4 cut(s)	186, 234, 300, 501
MaeI	CTAG	1 cut(s)	434
MaeII	ACGT	1 cut(s)	277
MaeIII	GTNAC	2 cut(s)	160, 353
MalI	GATC	3 cut(s)	319, 645, 759
MboI	GATC	3 cut(s)	317, 643, 757
MboII	GAAGA	8 cut(s)	408, 554, 609, 707, 710, 848, 887, 910
MfeI	CAATTG	2 cut(s)	420, 736
MhlI	GDGCHC	3 cut(s)	277, 488, 537
MluCI	AATT	7 cut(s)	167, 222, 420, 448, 601, 634, 736
MlyI	GAGTC	2 cut(s)	424, 782
MnlI	CCTC	2 cut(s)	396, 694
MroXI	GAANNNNTTC	2 cut(s)	196, 1005
MseI	TTAA	9 cut(s)	92, 231, 347, 393, 516, 527, 762, 863, 905
MslI	CAYNNNNRTG	1 cut(s)	360
MspA1I	CMGCKG	1 cut(s)	782
MunI	CAATTG	2 cut(s)	420, 736
Mva1269I	GAATGC	1 cut(s)	803
MwoI	GCNNNNNNNGC	3 cut(s)	272, 788, 807
NdeI	CATATG	1 cut(s)	997
NdeII	GATC	3 cut(s)	317, 643, 757
NlaIII	CATG	4 cut(s)	206, 542, 686, 823
NlaIV	GGNNCC	1 cut(s)	670
NmuCI	GTSAC	2 cut(s)	160, 353
NsbI	TGCGCA	1 cut(s)	611
NspI	RCATGY	1 cut(s)	686
NspV	TTCGAA	3 cut(s)	171, 336, 595
PagI	TCATGA	1 cut(s)	202
PceI	AGGCCT	1 cut(s)	196
PciI	ACATGT	1 cut(s)	682
PctI	GAATGC	1 cut(s)	803
PdmI	GAANNNNTTC	2 cut(s)	196, 1005
PfeI	GAWTC	1 cut(s)	291
PkrI	GCNGC	2 cut(s)	493, 784
PleI	GAGTC	2 cut(s)	424, 781
PpsI	GAGTC	2 cut(s)	424, 781
Ppu21I	YACGTR	1 cut(s)	278
PscI	ACATGT	1 cut(s)	682
PshBI	ATTAAT	1 cut(s)	527
PsiI	TTATAA	1 cut(s)	44
PspN4I	GGNNCC	1 cut(s)	670
PspPI	GGNCC	1 cut(s)	935
PstI	CTGCAG	1 cut(s)	493
PstNI	CAGNNNCTG	2 cut(s)	497, 960
PvuII	CAGCTG	1 cut(s)	782
RsaI	GTAC	3 cut(s)	426, 687, 722
RsaNI	GTAC	3 cut(s)	425, 686, 721
RseI	CAYNNNNRTG	1 cut(s)	360
SaqAI	TTAA	9 cut(s)	92, 231, 347, 393, 516, 527, 762, 863, 905
SatI	GCNGC	2 cut(s)	492, 783
Sau3AI	GATC	3 cut(s)	317, 643, 757
Sau96I	GGNCC	1 cut(s)	935
SchI	GAGTC	2 cut(s)	424, 782
SduI	GDGCHC	3 cut(s)	277, 488, 537
SetI	ASST	4 cut(s)	280, 660, 784, 921
SfaNI	GCATC	4 cut(s)	186, 234, 300, 501
SfcI	CTRYAG	1 cut(s)	489
SfuI	TTCGAA	3 cut(s)	171, 336, 595
SinI	GGWCC	1 cut(s)	935
SmiMI	CAYNNNNRTG	1 cut(s)	360
Sse9I	AATT	7 cut(s)	167, 222, 420, 448, 601, 634, 736
SseBI	AGGCCT	1 cut(s)	196
SsiI	CCGC	2 cut(s)	5, 853
SspI	AATATT	3 cut(s)	412, 585, 1004
SspMI	CTAG	1 cut(s)	434
StuI	AGGCCT	1 cut(s)	196
TaaI	ACNGT	3 cut(s)	160, 714, 859
TaiI	ACGT	1 cut(s)	280
TaqI	TCGA	6 cut(s)	128, 153, 171, 308, 336, 595
TasI	AATT	7 cut(s)	167, 222, 420, 448, 601, 634, 736
TatI	WGTACW	3 cut(s)	424, 685, 720
TfiI	GAWTC	1 cut(s)	291
Tru1I	TTAA	9 cut(s)	92, 231, 347, 393, 516, 527, 762, 863, 905
Tru9I	TTAA	9 cut(s)	92, 231, 347, 393, 516, 527, 762, 863, 905
TscAI	CASTG	2 cut(s)	717, 862
TseFI	GTSAC	2 cut(s)	160, 353
TseI	GCWGC	2 cut(s)	491, 782
Tsp45I	GTSAC	2 cut(s)	160, 353
TspDTI	ATGAA	4 cut(s)	219, 555, 849, 1014
TspGWI	ACGGA	1 cut(s)	379
TspRI	CASTG	2 cut(s)	717, 862
VneI	GTGCAC	1 cut(s)	273
VpaK11BI	GGWCC	1 cut(s)	935
VspI	ATTAAT	1 cut(s)	527
XapI	RAATTY	3 cut(s)	167, 222, 601
XbaI	TCTAGA	1 cut(s)	433
XceI	RCATGY	1 cut(s)	686
XmnI	GAANNNNTTC	2 cut(s)	196, 1005
XspI	CTAG	1 cut(s)	434

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.