Rorug02G0271200

DNA excision repair protein ERCC-6-like 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0013205
Physical Location & Seq
Reverse (-)
28751717 .. 28752502
786 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0271200.1

Sequence Viewer

Length: 786 bp
ATGACTATTATACCCCTCACTTCCTCTTTATTATTATTATTATTATATTTAATTTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTTTTTCTTTCTTTCTCTTTTTTATTTTTTTATTGTTTTTCTGGTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCAGTTTGTATCCGACCTCGAGTTCATCCACTCGATCCACTCCTCATGGAAGCTCCTCCGCCGCAATTCCATCTCCACCTCCGTCGTCATCCCCACCAAGCTCATCCACTTCTCCTTCTCCTCATCCTCCACCACTCCCACCAATAAGCCCGGCTCAACTGCAGCTTCCCAACCCAAAACGGTGCCGTGACGCCACACCATCGGCCGCCGCAGCTCGACCTAGATCTTCTGTCCCTCAAGAGCTCCGAATCCTACACCTCCCTCAAGGACCTCCTCCCCTCTTCCTCTTTCGCCACCGTCCAGTGCCCGACGCCCAACTCCGCCACCAACTCCGGCTACGAGATCTCCATCCGCAACCGCCTCGTCAAATAGGCTGCCTGGGCCTACCTCCAGCCCATGTCCTTCACCTGCGACCCACACTTGCTCCGCCGCCTCTGGCTCAAGTGCAGCCCCTGCCTCTCCTTCATCACCCACCGCCTCTTCCCCTTTCTCTCCCAAACCCACCATCGCTTACTTCCTTGCTTCCAGCTCTCTTAACATCTACTTCACTTTTCAAACCCCGTTCGTTACTTTCGGGTTCGCACACAGTCAACAACACATTGCCCAATCTCTCGAACTCATGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0016020
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Helicase_C SNF2_N

Protein Analysis

261

Amino Acids

28.27

Weight (kDa)

11.62

Isoelectric Point (pI)

72.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013205)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G03750
fragaria_vesca FvH4_6g26480 FvH4_6g26480 FvH4_6g26480 FvH4_6g26480
malus_domestica MD17G1236900.v1.1
prunus_persica Prupe.3G139100_v2.0.a1
pyrus_communis pycom17g24160
rosa_chinensis RchiOBHm_Chr2g0127761
rosa_laevigata RLG00000018935
rosa_multiflora Rmu_sc0001829.1_g000008 Rmu_sc0004240.1_g000009
rosa_roxburghii Rroxscaffold_2G00116780
rosa_rugosa Rorug02G0271200
rosa_samantha Rh2AG323300 Rh2BG332500 Rh2CG311100
rosa_wichuraiana Rw2G026240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 576
Acc36I ACCTGC 1 cut(s) 576
AccB1I GGYRCC 1 cut(s) 342
AclWI GGATC 1 cut(s) 189
AcoI YGGCCR 1 cut(s) 363
AcyI GRCGYC 2 cut(s) 351, 471
AgsI TTSAA 1 cut(s) 715
AjnI CCWGG 1 cut(s) 537
AluBI AGCT 6 cut(s) 213, 261, 325, 374, 403, 689
AluI AGCT 6 cut(s) 213, 261, 325, 374, 403, 689
Alw21I GWGCWC 1 cut(s) 405
AlwI GGATC 1 cut(s) 189
AlwNI CAGNNNCTG 1 cut(s) 613
Ama87I CYCGRG 1 cut(s) 178
AoxI GGCC 2 cut(s) 363, 541
ApeKI GCWGC 4 cut(s) 322, 371, 534, 607
AspS9I GGNCC 2 cut(s) 428, 541
AsuC2I CCSGG 1 cut(s) 311
AsuHPI GGTGA 2 cut(s) 557, 620
AvaI CYCGRG 1 cut(s) 178
AvaII GGWCC 1 cut(s) 428
BaeGI GKGCMC 1 cut(s) 468
BanI GGYRCC 1 cut(s) 342
BanII GRGCYC 1 cut(s) 405
Bbv12I GWGCWC 1 cut(s) 405
BbvI GCAGC 4 cut(s) 334, 383, 521, 619
BccI CCATC 4 cut(s) 238, 367, 516, 673
BceAI ACGGC 1 cut(s) 330
BcgI CGANNNNNNTGC 2 cut(s) 503, 537
BciT130I CCWGG 1 cut(s) 539
BciVI GTATCC 1 cut(s) 180
BcnI CCSGG 1 cut(s) 311
BfaI CTAG 1 cut(s) 381
BfmI CTRYAG 1 cut(s) 320
BfuAI ACCTGC 1 cut(s) 576
BfuI GTATCC 1 cut(s) 180
BglII AGATCT 2 cut(s) 383, 502
BisI GCNGC 8 cut(s) 222, 323, 366, 369, 372, 535, 590, 608
BlsI GCNGC 8 cut(s) 223, 324, 367, 370, 373, 536, 591, 609
Bme1390I CCNGG 2 cut(s) 311, 539
Bme18I GGWCC 1 cut(s) 428
BmeT110I CYCGRG 1 cut(s) 178
BmgT120I GGNCC 2 cut(s) 428, 541
BmiI GGNNCC 1 cut(s) 344
BmrFI CCNGG 2 cut(s) 311, 539
BpmI CTGGAG 1 cut(s) 534
BpuEI CTTGAG 3 cut(s) 381, 408, 585
BpuMI CCSGG 1 cut(s) 311
BsaBI GATNNNNATC 1 cut(s) 507
BsaHI GRCGYC 2 cut(s) 351, 471
BsaJI CCNNGG 1 cut(s) 538
BsaXI ACNNNNNCTCC 4 cut(s) 489, 519, 568, 598
Bse1I ACTGG 1 cut(s) 461
Bse3DI GCAATG 1 cut(s) 758
Bse8I GATNNNNATC 1 cut(s) 507
BseBI CCWGG 1 cut(s) 539
BseDI CCNNGG 1 cut(s) 538
BseGI GGATG 5 cut(s) 185, 248, 263, 283, 508
BseJI GATNNNNATC 1 cut(s) 507
BseMI GCAATG 1 cut(s) 758
BseMII CTCAG 1 cut(s) 175
BseNI ACTGG 1 cut(s) 461
BseRI GAGGAG 4 cut(s) 192, 205, 270, 423
BseSI GKGCMC 1 cut(s) 468
BseX3I CGGCCG 1 cut(s) 363
BseXI GCAGC 4 cut(s) 334, 383, 521, 619
BsgI GTGCAG 1 cut(s) 626
Bsh1285I CGRYCG 1 cut(s) 366
BshFI GGCC 2 cut(s) 365, 543
BshNI GGYRCC 1 cut(s) 342
BsiEI CGRYCG 1 cut(s) 366
BsiHKAI GWGCWC 1 cut(s) 405
BsiHKCI CYCGRG 1 cut(s) 178
BsiSI CCGG 2 cut(s) 311, 493
BslFI GGGAC 1 cut(s) 377
BsmFI GGGAC 1 cut(s) 377
BsnI GGCC 2 cut(s) 365, 543
BsoBI CYCGRG 1 cut(s) 178
Bsp1286I GDGCHC 2 cut(s) 405, 468
Bsp143I GATC 3 cut(s) 194, 383, 502
BspANI GGCC 2 cut(s) 365, 543
BspCNI CTCAG 1 cut(s) 174
BspLI GGNNCC 1 cut(s) 344
BspMAI CTGCAG 1 cut(s) 324
BspMI ACCTGC 1 cut(s) 576
BspPI GGATC 1 cut(s) 189
BspT107I GGYRCC 1 cut(s) 342
BsrDI GCAATG 1 cut(s) 758
BsrI ACTGG 1 cut(s) 461
BssECI CCNNGG 1 cut(s) 538
BssMI GATC 3 cut(s) 194, 383, 502
BssNI GRCGYC 2 cut(s) 351, 471
Bst2UI CCWGG 1 cut(s) 539
Bst4CI ACNGT 3 cut(s) 342, 458, 748
Bst6I CTCTTC 2 cut(s) 446, 645
BstACI GRCGYC 2 cut(s) 351, 471
BstAPI GCANNNNNTGC 1 cut(s) 613
BstDEI CTNAG 1 cut(s) 161
BstF5I GGATG 5 cut(s) 185, 248, 263, 283, 508
BstKTI GATC 3 cut(s) 197, 386, 505
BstMBI GATC 3 cut(s) 194, 383, 502
BstMCI CGRYCG 1 cut(s) 366
BstMWI GCNNNNNNNGC 3 cut(s) 371, 540, 613
BstNI CCWGG 1 cut(s) 539
BstSCI CCNGG 2 cut(s) 309, 537
BstSFI CTRYAG 1 cut(s) 320
BstSLI GKGCMC 1 cut(s) 468
BstV1I GCAGC 4 cut(s) 334, 383, 521, 619
BstX2I RGATCY 2 cut(s) 383, 502
BstYI RGATCY 2 cut(s) 383, 502
BstZI CGGCCG 1 cut(s) 363
BsuI GTATCC 1 cut(s) 180
BsuRI GGCC 2 cut(s) 365, 543
BtgZI GCGATG 1 cut(s) 651
BtsCI GGATG 5 cut(s) 185, 248, 263, 283, 508
BtsIMutI CAGTG 1 cut(s) 468
BveI ACCTGC 1 cut(s) 576
CaiI CAGNNNCTG 1 cut(s) 613
Cfr13I GGNCC 2 cut(s) 428, 541
CseI GACGC 2 cut(s) 359, 479
CviAII CATG 3 cut(s) 206, 557, 780
DdeI CTNAG 1 cut(s) 161
DpnI GATC 3 cut(s) 196, 385, 504
DpnII GATC 3 cut(s) 194, 383, 502
EaeI YGGCCR 1 cut(s) 363
EagI CGGCCG 1 cut(s) 363
Eam1104I CTCTTC 2 cut(s) 446, 645
EarI CTCTTC 2 cut(s) 446, 645
EciI GGCGGA 3 cut(s) 208, 470, 576
Ecl136II GAGCTC 1 cut(s) 403
EclXI CGGCCG 1 cut(s) 363
Eco24I GRGCYC 1 cut(s) 405
Eco47I GGWCC 1 cut(s) 428
Eco52I CGGCCG 1 cut(s) 363
Eco53kI GAGCTC 1 cut(s) 403
Eco88I CYCGRG 1 cut(s) 178
EcoICRI GAGCTC 1 cut(s) 403
EcoO109I RGGNCCY 1 cut(s) 428
EcoRII CCWGG 1 cut(s) 537
EcoT38I GRGCYC 1 cut(s) 405
FaeI CATG 3 cut(s) 209, 560, 783
FaiI YATR 5 cut(s) 11, 46, 207, 558, 781
FaqI GGGAC 1 cut(s) 377
FatI CATG 3 cut(s) 205, 556, 779
Fnu4HI GCNGC 8 cut(s) 222, 323, 366, 369, 372, 535, 590, 608
FokI GGATG 5 cut(s) 172, 235, 250, 270, 495
FriOI GRGCYC 1 cut(s) 405
Fsp4HI GCNGC 8 cut(s) 222, 323, 366, 369, 372, 535, 590, 608
FspBI CTAG 1 cut(s) 381
GluI GCNGC 8 cut(s) 222, 323, 366, 369, 372, 535, 590, 608
GsuI CTGGAG 1 cut(s) 534
HaeIII GGCC 2 cut(s) 365, 543
HapII CCGG 2 cut(s) 311, 493
HgaI GACGC 2 cut(s) 359, 479
Hin1I GRCGYC 2 cut(s) 351, 471
Hin1II CATG 3 cut(s) 209, 560, 783
HincII GTYRAC 1 cut(s) 751
HindII GTYRAC 1 cut(s) 751
HinfI GANTC 1 cut(s) 408
HpaII CCGG 2 cut(s) 311, 493
HphI GGTGA 2 cut(s) 557, 620
Hpy166II GTNNAC 1 cut(s) 751
Hpy188I TCNGA 2 cut(s) 174, 407
Hpy188III TCNNGA 2 cut(s) 398, 772
Hpy8I GTNNAC 1 cut(s) 751
Hpy99I CGWCG 2 cut(s) 247, 473
HpyAV CCTTC 3 cut(s) 285, 572, 632
HpyCH4III ACNGT 3 cut(s) 342, 458, 748
HpyCH4V TGCA 2 cut(s) 322, 607
HpyF10VI GCNNNNNNNGC 3 cut(s) 371, 540, 613
HpyF3I CTNAG 1 cut(s) 161
Hsp92I GRCGYC 2 cut(s) 351, 471
Hsp92II CATG 3 cut(s) 209, 560, 783
Kzo9I GATC 3 cut(s) 194, 383, 502
LmnI GCTCC 3 cut(s) 218, 408, 589
Lsp1109I GCAGC 4 cut(s) 334, 383, 521, 619
MaeI CTAG 1 cut(s) 381
MaeIII GTNAC 2 cut(s) 347, 726
MalI GATC 3 cut(s) 196, 385, 504
MboI GATC 3 cut(s) 194, 383, 502
MboII GAAGA 3 cut(s) 378, 433, 632
MflI RGATCY 2 cut(s) 383, 502
MhlI GDGCHC 2 cut(s) 405, 468
MluCI AATT 2 cut(s) 51, 225
MmeI TCCRAC 1 cut(s) 197
MseI TTAA 2 cut(s) 50, 695
MspI CCGG 2 cut(s) 311, 493
MspR9I CCNGG 2 cut(s) 311, 539
MvaI CCWGG 1 cut(s) 539
MwoI GCNNNNNNNGC 3 cut(s) 371, 540, 613
NciI CCSGG 1 cut(s) 311
NdeII GATC 3 cut(s) 194, 383, 502
NlaIII CATG 3 cut(s) 209, 560, 783
NlaIV GGNNCC 1 cut(s) 344
NmuCI GTSAC 1 cut(s) 347
PaeR7I CTCGAG 1 cut(s) 178
PaqCI CACCTGC 1 cut(s) 576
PfeI GAWTC 1 cut(s) 408
PkrI GCNGC 8 cut(s) 223, 324, 367, 370, 373, 536, 591, 609
PpuMI RGGWCCY 1 cut(s) 428
Psp124BI GAGCTC 1 cut(s) 405
Psp5II RGGWCCY 1 cut(s) 428
Psp6I CCWGG 1 cut(s) 537
PspGI CCWGG 1 cut(s) 537
PspN4I GGNNCC 1 cut(s) 344
PspPI GGNCC 2 cut(s) 428, 541
PspPPI RGGWCCY 1 cut(s) 428
PspXI VCTCGAGB 1 cut(s) 178
PstI CTGCAG 1 cut(s) 324
PstNI CAGNNNCTG 1 cut(s) 613
PsuI RGATCY 2 cut(s) 383, 502
SacI GAGCTC 1 cut(s) 405
SaqAI TTAA 2 cut(s) 50, 695
SatI GCNGC 8 cut(s) 222, 323, 366, 369, 372, 535, 590, 608
Sau3AI GATC 3 cut(s) 194, 383, 502
Sau96I GGNCC 2 cut(s) 428, 541
ScrFI CCNGG 2 cut(s) 311, 539
SduI GDGCHC 2 cut(s) 405, 468
SfcI CTRYAG 1 cut(s) 320
Sfr274I CTCGAG 1 cut(s) 178
SinI GGWCC 1 cut(s) 428
SlaI CTCGAG 1 cut(s) 178
SmlI CTYRAG 4 cut(s) 178, 396, 423, 600
SmoI CTYRAG 4 cut(s) 178, 396, 423, 600
Sse9I AATT 2 cut(s) 51, 225
SspMI CTAG 1 cut(s) 381
SstI GAGCTC 1 cut(s) 405
StyD4I CCNGG 2 cut(s) 309, 537
TaaI ACNGT 3 cut(s) 342, 458, 748
TaqI TCGA 4 cut(s) 179, 193, 376, 773
TasI AATT 2 cut(s) 51, 225
TauI GCSGC 4 cut(s) 224, 368, 371, 592
TfiI GAWTC 1 cut(s) 408
Tru1I TTAA 2 cut(s) 50, 695
Tru9I TTAA 2 cut(s) 50, 695
TscAI CASTG 1 cut(s) 468
TseFI GTSAC 1 cut(s) 347
TseI GCWGC 4 cut(s) 322, 371, 534, 607
Tsp45I GTSAC 1 cut(s) 347
TspDTI ATGAA 2 cut(s) 174, 614
TspGWI ACGGA 1 cut(s) 231
TspRI CASTG 1 cut(s) 468
VpaK11BI GGWCC 1 cut(s) 428
XhoI CTCGAG 1 cut(s) 178
XspI CTAG 1 cut(s) 381
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.