Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0008562

Physical Location & Seq

Genomic Coordinates Reverse (-)

62447051 .. 62447490

Gene Structure 440 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0495100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATGGGGTTCAAACAATTTCGGACTTTGGTCCAAAAAGGGCTTGCACCACTAAAAGATGAGAGCTGTCTCACAAATGGTTTCCTGGACAAAGTAATAGATTGGATTCCCGGAATGAAAGATATTCGTTTAAAGGATCTCCCATCCTTTTTTCGAACTACAGATCCAAATGACACGATGTTTAACTTCATCATGGAAGCAACGGACAAAGTTCATAAAGCTGATGCATTCGTATTTCTTACATTTGATGCGTTAGAACAAAATGTTTTGGACGCTATGTCATCTATATTTGATCAGTCACTAGTGGCGGAACCAGGATCCGAGACTTGTCTAGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0007623 GO:0008150 GO:0008152 GO:0009506 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0030054 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048511 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

LRRNT_2 LRR_8 Pkinase_Tyr

Protein Analysis

111

Amino Acids

12.49

Weight (kDa)

4.57

Isoelectric Point (pI)

31.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008562)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G03390 AT4G03390
fragaria_vesca	FvH4_6g44950 FvH4_6g44950 FvH4_6g44950
malus_domestica	MD09G1091500.v1.1 MD17G1081400.v1.1
prunus_persica	Prupe.3G233500_v2.0.a1 Prupe.3G233500_v2.0.a1 Prupe.3G233500_v2.0.a1 Prupe.3G233500_v2.0.a1 Prupe.3G233500_v2.0.a1 Prupe.3G233500_v2.0.a1
pyrus_communis	pycom09g01720 pycom17g07970
rosa_chinensis	RchiOBHm_Chr2g0162181
rosa_laevigata	RLG00000021326
rosa_multiflora	Rmu_sc0004020.1_g000030
rosa_roxburghii	Rroxscaffold_2G00088260
rosa_rugosa	Rorug02G0495000 Rorug02G0495100
rosa_samantha	Rh2BG574600
rosa_wichuraiana	Rw2G046500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	305
AclWI	GGATC	4 cut(s)	141, 155, 309, 322
AgsI	TTSAA	1 cut(s)	10
AhdI	GACNNNNNGTC	1 cut(s)	274
AhlI	ACTAGT	1 cut(s)	298
AjnI	CCWGG	2 cut(s)	81, 310
AloI	GAACNNNNNNTCC	2 cut(s)	145, 177
AluBI	AGCT	2 cut(s)	63, 218
AluI	AGCT	2 cut(s)	63, 218
Alw26I	GTCTC	2 cut(s)	71, 314
AlwI	GGATC	4 cut(s)	141, 155, 309, 322
AspS9I	GGNCC	1 cut(s)	28
AsuC2I	CCSGG	1 cut(s)	108
AsuII	TTCGAA	1 cut(s)	151
AvaII	GGWCC	1 cut(s)	28
BamHI	GGATCC	1 cut(s)	314
BccI	CCATC	1 cut(s)	148
BciT130I	CCWGG	2 cut(s)	83, 312
BclI	TGATCA	1 cut(s)	289
BcnI	CCSGG	1 cut(s)	108
BcoDI	GTCTC	2 cut(s)	71, 314
BcuI	ACTAGT	1 cut(s)	298
BfaI	CTAG	2 cut(s)	299, 329
BfmI	CTRYAG	1 cut(s)	156
Bme1390I	CCNGG	3 cut(s)	83, 108, 312
Bme18I	GGWCC	1 cut(s)	28
BmeRI	GACNNNNNGTC	1 cut(s)	274
BmgT120I	GGNCC	1 cut(s)	28
BmiI	GGNNCC	2 cut(s)	309, 316
BmrFI	CCNGG	3 cut(s)	83, 108, 312
BmsI	GCATC	2 cut(s)	211, 235
BoxI	GACNNNNGTC	1 cut(s)	26
Bpu14I	TTCGAA	1 cut(s)	151
BpuMI	CCSGG	1 cut(s)	108
BseBI	CCWGG	2 cut(s)	83, 312
BseGI	GGATG	1 cut(s)	140
BsiSI	CCGG	1 cut(s)	108
BsmAI	GTCTC	2 cut(s)	71, 314
BsmI	GAATGC	1 cut(s)	224
Bsp119I	TTCGAA	1 cut(s)	151
Bsp143I	GATC	4 cut(s)	133, 160, 289, 314
BspACI	CCGC	1 cut(s)	305
BspLI	GGNNCC	2 cut(s)	309, 316
BspPI	GGATC	4 cut(s)	141, 155, 309, 322
BspT104I	TTCGAA	1 cut(s)	151
BssMI	GATC	4 cut(s)	133, 160, 289, 314
Bst2UI	CCWGG	2 cut(s)	83, 312
BstBI	TTCGAA	1 cut(s)	151
BstC8I	GCNNGC	1 cut(s)	42
BstF5I	GGATG	1 cut(s)	140
BstKTI	GATC	4 cut(s)	136, 163, 292, 317
BstMAI	GTCTC	2 cut(s)	71, 314
BstMBI	GATC	4 cut(s)	133, 160, 289, 314
BstNI	CCWGG	2 cut(s)	83, 312
BstPAI	GACNNNNGTC	1 cut(s)	26
BstSCI	CCNGG	3 cut(s)	81, 106, 310
BstSFI	CTRYAG	1 cut(s)	156
BstX2I	RGATCY	3 cut(s)	133, 160, 314
BstYI	RGATCY	3 cut(s)	133, 160, 314
BtsCI	GGATG	1 cut(s)	140
Cac8I	GCNNGC	1 cut(s)	42
Cfr13I	GGNCC	1 cut(s)	28
CseI	GACGC	1 cut(s)	278
CviAII	CATG	1 cut(s)	190
CviJI	RGCY	4 cut(s)	40, 63, 218, 333
CviKI_1	RGCY	4 cut(s)	40, 63, 218, 333
DpnI	GATC	4 cut(s)	135, 162, 291, 316
DpnII	GATC	4 cut(s)	133, 160, 289, 314
DraI	TTTAAA	1 cut(s)	129
DriI	GACNNNNNGTC	1 cut(s)	274
Eam1105I	GACNNNNNGTC	1 cut(s)	274
EciI	GGCGGA	1 cut(s)	320
Eco47I	GGWCC	1 cut(s)	28
EcoRII	CCWGG	2 cut(s)	81, 310
EcoT22I	ATGCAT	1 cut(s)	226
FaeI	CATG	1 cut(s)	193
FaiI	YATR	4 cut(s)	191, 213, 275, 284
FatI	CATG	1 cut(s)	189
FbaI	TGATCA	1 cut(s)	289
FokI	GGATG	1 cut(s)	127
FspBI	CTAG	2 cut(s)	299, 329
HapII	CCGG	1 cut(s)	108
HgaI	GACGC	1 cut(s)	278
Hin1II	CATG	1 cut(s)	193
HinfI	GANTC	1 cut(s)	103
HpaII	CCGG	1 cut(s)	108
Hpy188I	TCNGA	2 cut(s)	21, 319
HpyCH4V	TGCA	2 cut(s)	44, 224
Hsp92II	CATG	1 cut(s)	193
Ksp22I	TGATCA	1 cut(s)	289
Kzo9I	GATC	4 cut(s)	133, 160, 289, 314
LpnPI	CCDG	5 cut(s)	68, 95, 121, 297, 324
LweI	GCATC	2 cut(s)	211, 235
MaeI	CTAG	2 cut(s)	299, 329
MaeIII	GTNAC	1 cut(s)	294
MalI	GATC	4 cut(s)	135, 162, 291, 316
MboI	GATC	4 cut(s)	133, 160, 289, 314
MflI	RGATCY	3 cut(s)	133, 160, 314
MluCI	AATT	1 cut(s)	14
Mph1103I	ATGCAT	1 cut(s)	226
MseI	TTAA	2 cut(s)	128, 180
MspI	CCGG	1 cut(s)	108
MspR9I	CCNGG	3 cut(s)	83, 108, 312
Mva1269I	GAATGC	1 cut(s)	224
MvaI	CCWGG	2 cut(s)	83, 312
NciI	CCSGG	1 cut(s)	108
NdeII	GATC	4 cut(s)	133, 160, 289, 314
NlaIII	CATG	1 cut(s)	193
NlaIV	GGNNCC	2 cut(s)	309, 316
NmuCI	GTSAC	1 cut(s)	294
NsiI	ATGCAT	1 cut(s)	226
NspV	TTCGAA	1 cut(s)	151
PctI	GAATGC	1 cut(s)	224
PfeI	GAWTC	1 cut(s)	103
PfoI	TCCNGGA	2 cut(s)	81, 106
PshAI	GACNNNNGTC	1 cut(s)	26
Psp6I	CCWGG	2 cut(s)	81, 310
PspGI	CCWGG	2 cut(s)	81, 310
PspN4I	GGNNCC	2 cut(s)	309, 316
PspPI	GGNCC	1 cut(s)	28
PsuI	RGATCY	3 cut(s)	133, 160, 314
SaqAI	TTAA	2 cut(s)	128, 180
Sau3AI	GATC	4 cut(s)	133, 160, 289, 314
Sau96I	GGNCC	1 cut(s)	28
ScrFI	CCNGG	3 cut(s)	83, 108, 312
SetI	ASST	2 cut(s)	65, 220
SfaNI	GCATC	2 cut(s)	211, 235
SfcI	CTRYAG	1 cut(s)	156
SfuI	TTCGAA	1 cut(s)	151
SinI	GGWCC	1 cut(s)	28
SpeI	ACTAGT	1 cut(s)	298
Sse9I	AATT	1 cut(s)	14
SsiI	CCGC	1 cut(s)	305
SspMI	CTAG	2 cut(s)	299, 329
StyD4I	CCNGG	3 cut(s)	81, 106, 310
TaqI	TCGA	1 cut(s)	151
TasI	AATT	1 cut(s)	14
TfiI	GAWTC	1 cut(s)	103
Tru1I	TTAA	2 cut(s)	128, 180
Tru9I	TTAA	2 cut(s)	128, 180
TseFI	GTSAC	1 cut(s)	294
Tsp45I	GTSAC	1 cut(s)	294
TspDTI	ATGAA	3 cut(s)	128, 175, 200
TspGWI	ACGGA	1 cut(s)	215
VpaK11BI	GGWCC	1 cut(s)	28
XspI	CTAG	2 cut(s)	299, 329
Zsp2I	ATGCAT	1 cut(s)	226

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.