Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0010588

Physical Location & Seq

Genomic Coordinates Forward (+)

65711395 .. 65713046

Gene Structure 1652 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0527200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

ATGAAGATAGGTAGTTTGTTCAAAGCAGCCGTAGGAGATGCAATTTTGACTTCCATGTTCGTTTTCATTGGCCCAATCATGCGTGTTTTCACATCCATCATAGCTTCATTTCTTGGTTTCCAAGCTAGGTCCTTGGTAGGCCGTTTCATCACCACCATACATGCCACAGTTCTGGTCCTGATATTCAGCACGATTGGCAAGCTCTTGGGTGGTGCCAGCTTCAATCCCTCCACCACTGTCAGTTTGTACGCCGCCGGCCTCAACCCGGGAACTTCCCTGATCTCAATGGCGGTCCAGTTCCCGGCTCAGGCGGCTGGCGGAGCAGGTGGCGCCAAGGCCATCCTGCAAGTGATGCCTAAAAAGTATGAACATTTTGTCAAAGGGCCTTCTCTGAAAGTGGATGTGAAAAGTGGTGCTATTGCTGAAGGGTTGTTCACTTTTTCCCTTTGCTTTTCTCTGCTTTGGGTTATGCTTAGGGGTCCTAAGAATCTTTTTCTGCAAATATGGTTGGTTAAAGTGGCTACTGTGGGATTAGCTATTGTGGGAAGTGGGTACACAGGACCTTCTATGAACCCTGCTAATGCTTTTGGCTGGGCTTATGTTGATAACTGGCACAATACTTGGGAGCTGTTCTTTGTTTATTGGGTTGGTCCTTTAATTGGAGCAGCTTTGGCTGCTTGGGTCTTCAAGATTTTGTTTCCTCCACCAGAAACAAAGACAAAGGAGAAGAAAGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

245

Amino Acids

26.24

Weight (kDa)

9.96

Isoelectric Point (pI)

17.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIP	PF00230	6 - 229	1.3e-18	Major intrinsic protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010588)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g47800 FvH4_6g47800 FvH4_6g47800
malus_domestica	MD09G1056600.v1.1 MD17G1054100.v1.1
prunus_persica	Prupe.3G262100_v2.0.a1
pyrus_communis	pycom111g04740
rosa_chinensis	RchiOBHm_Chr2g0166991
rosa_laevigata	RLG00000021687
rosa_multiflora	Rmu_sc0010966.1_g000003 Rmu_sc0010966.1_g000004 Rmu_sc0025421.1_g000004
rosa_roxburghii	Rroxscaffold_2G00083830
rosa_rugosa	Rorug02G0527200 Rorug02G0527300 Rorug02G0527300
rosa_samantha	Rh2AG594100 Rh2BG605600 Rh2CG576500 Rh2DG617100
rosa_wichuraiana	Rw2G049470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	314
Acc36I	ACCTGC	1 cut(s)	314
AccB1I	GGYRCC	2 cut(s)	212, 329
AciI	CCGC	4 cut(s)	252, 290, 311, 318
AcuI	CTGAAG	1 cut(s)	444
AcyI	GRCGYC	1 cut(s)	330
AfaI	GTAC	2 cut(s)	248, 554
AfiI	CCNNNNNNNGG	4 cut(s)	265, 301, 307, 659
AgsI	TTSAA	3 cut(s)	22, 223, 688
AluBI	AGCT	7 cut(s)	104, 125, 202, 219, 536, 628, 668
AluI	AGCT	7 cut(s)	104, 125, 202, 219, 536, 628, 668
Ama87I	CYCGRG	1 cut(s)	265
AoxI	GGCC	5 cut(s)	70, 139, 256, 336, 383
ApeKI	GCWGC	3 cut(s)	26, 665, 674
AspLEI	GCGC	1 cut(s)	332
AspS9I	GGNCC	8 cut(s)	71, 129, 175, 292, 383, 479, 560, 650
AsuC2I	CCSGG	3 cut(s)	266, 267, 302
AsuHPI	GGTGA	1 cut(s)	142
AvaI	CYCGRG	1 cut(s)	265
AvaII	GGWCC	6 cut(s)	129, 175, 292, 479, 560, 650
BanI	GGYRCC	2 cut(s)	212, 329
BbsI	GAAGAC	1 cut(s)	676
BbvI	GCAGC	3 cut(s)	38, 661, 677
BccI	CCATC	2 cut(s)	104, 347
BceAI	ACGGC	2 cut(s)	14, 126
BcnI	CCSGG	3 cut(s)	266, 267, 302
BfaI	CTAG	1 cut(s)	126
BfoI	RGCGCY	1 cut(s)	333
BfuAI	ACCTGC	1 cut(s)	314
BisI	GCNGC	5 cut(s)	27, 252, 312, 666, 675
BlsI	GCNGC	5 cut(s)	28, 253, 313, 667, 676
Bme1390I	CCNGG	3 cut(s)	266, 267, 302
Bme18I	GGWCC	6 cut(s)	129, 175, 292, 479, 560, 650
BmeT110I	CYCGRG	1 cut(s)	265
BmgT120I	GGNCC	8 cut(s)	71, 129, 175, 292, 383, 479, 560, 650
BmiI	GGNNCC	3 cut(s)	214, 331, 480
BmrFI	CCNGG	3 cut(s)	266, 267, 302
BmsI	GCATC	2 cut(s)	28, 342
BpiI	GAAGAC	1 cut(s)	676
Bpu10I	CCTNAGC	2 cut(s)	306, 473
BpuMI	CCSGG	3 cut(s)	266, 267, 302
BsaHI	GRCGYC	1 cut(s)	330
BsaJI	CCNNGG	3 cut(s)	132, 265, 333
Bsc4I	CCNNNNNNNGG	4 cut(s)	265, 301, 307, 659
Bse118I	RCCGGY	1 cut(s)	254
Bse1I	ACTGG	2 cut(s)	295, 614
BseDI	CCNNGG	3 cut(s)	132, 265, 333
BseGI	GGATG	3 cut(s)	92, 339, 406
BseLI	CCNNNNNNNGG	4 cut(s)	265, 301, 307, 659
BseMII	CTCAG	1 cut(s)	320
BseNI	ACTGG	2 cut(s)	295, 614
BseXI	GCAGC	3 cut(s)	38, 661, 677
BseYI	CCCAGC	1 cut(s)	591
BshFI	GGCC	5 cut(s)	72, 141, 258, 338, 385
BshNI	GGYRCC	2 cut(s)	212, 329
BsiHKCI	CYCGRG	1 cut(s)	265
BsiSI	CCGG	3 cut(s)	255, 266, 302
BslI	CCNNNNNNNGG	4 cut(s)	265, 301, 307, 659
BsnI	GGCC	5 cut(s)	72, 141, 258, 338, 385
BsoBI	CYCGRG	1 cut(s)	265
Bsp143I	GATC	1 cut(s)	279
BspACI	CCGC	4 cut(s)	252, 290, 311, 318
BspANI	GGCC	5 cut(s)	72, 141, 258, 338, 385
BspCNI	CTCAG	1 cut(s)	319
BspLI	GGNNCC	3 cut(s)	214, 331, 480
BspMI	ACCTGC	1 cut(s)	314
BspT107I	GGYRCC	2 cut(s)	212, 329
BsrFI	RCCGGY	1 cut(s)	254
BsrI	ACTGG	2 cut(s)	295, 614
BssAI	RCCGGY	1 cut(s)	254
BssECI	CCNNGG	3 cut(s)	132, 265, 333
BssMI	GATC	1 cut(s)	279
BssNI	GRCGYC	1 cut(s)	330
BssT1I	CCWWGG	2 cut(s)	132, 333
Bst4CI	ACNGT	3 cut(s)	169, 238, 526
BstACI	GRCGYC	1 cut(s)	330
BstAPI	GCANNNNNTGC	1 cut(s)	352
BstC8I	GCNNGC	4 cut(s)	200, 217, 256, 316
BstDEI	CTNAG	3 cut(s)	306, 473, 483
BstF5I	GGATG	3 cut(s)	92, 339, 406
BstH2I	RGCGCY	1 cut(s)	333
BstHHI	GCGC	1 cut(s)	332
BstKTI	GATC	1 cut(s)	282
BstMBI	GATC	1 cut(s)	279
BstMWI	GCNNNNNNNGC	7 cut(s)	195, 311, 320, 329, 352, 671, 674
BstNSI	RCATGY	1 cut(s)	164
BstSCI	CCNGG	3 cut(s)	264, 265, 300
BstV1I	GCAGC	3 cut(s)	38, 661, 677
BstV2I	GAAGAC	1 cut(s)	676
BstXI	CCANNNNNNTGG	1 cut(s)	172
BsuRI	GGCC	5 cut(s)	72, 141, 258, 338, 385
BtsCI	GGATG	3 cut(s)	92, 339, 406
BtsIMutI	CAGTG	1 cut(s)	234
BveI	ACCTGC	1 cut(s)	314
Cac8I	GCNNGC	4 cut(s)	200, 217, 256, 316
CfoI	GCGC	1 cut(s)	332
Cfr10I	RCCGGY	1 cut(s)	254
Cfr13I	GGNCC	8 cut(s)	71, 129, 175, 292, 383, 479, 560, 650
Cfr9I	CCCGGG	1 cut(s)	265
Csp6I	GTAC	2 cut(s)	247, 553
CviAII	CATG	3 cut(s)	55, 79, 161
CviQI	GTAC	2 cut(s)	247, 553
DdeI	CTNAG	3 cut(s)	306, 473, 483
DinI	GGCGCC	1 cut(s)	331
DpnI	GATC	1 cut(s)	281
DpnII	GATC	1 cut(s)	279
EciI	GGCGGA	1 cut(s)	333
Eco130I	CCWWGG	2 cut(s)	132, 333
Eco47I	GGWCC	6 cut(s)	129, 175, 292, 479, 560, 650
Eco57I	CTGAAG	1 cut(s)	444
Eco88I	CYCGRG	1 cut(s)	265
EcoO109I	RGGNCCY	4 cut(s)	129, 383, 479, 560
EcoT14I	CCWWGG	2 cut(s)	132, 333
EgeI	GGCGCC	1 cut(s)	331
EheI	GGCGCC	1 cut(s)	331
ErhI	CCWWGG	2 cut(s)	132, 333
FaeI	CATG	3 cut(s)	58, 82, 164
FatI	CATG	3 cut(s)	54, 78, 160
Fnu4HI	GCNGC	5 cut(s)	27, 252, 312, 666, 675
FokI	GGATG	3 cut(s)	79, 326, 413
Fsp4HI	GCNGC	5 cut(s)	27, 252, 312, 666, 675
FspBI	CTAG	1 cut(s)	126
GlaI	GCGC	1 cut(s)	331
GluI	GCNGC	5 cut(s)	27, 252, 312, 666, 675
GsaI	CCCAGC	1 cut(s)	595
HaeII	RGCGCY	1 cut(s)	333
HaeIII	GGCC	5 cut(s)	72, 141, 258, 338, 385
HapII	CCGG	3 cut(s)	255, 266, 302
HhaI	GCGC	1 cut(s)	332
Hin1I	GRCGYC	1 cut(s)	330
Hin1II	CATG	3 cut(s)	58, 82, 164
Hin6I	GCGC	1 cut(s)	330
HinP1I	GCGC	1 cut(s)	330
HinfI	GANTC	1 cut(s)	487
HpaII	CCGG	3 cut(s)	255, 266, 302
HphI	GGTGA	1 cut(s)	142
Hpy166II	GTNNAC	2 cut(s)	435, 555
Hpy188I	TCNGA	1 cut(s)	393
Hpy188III	TCNNGA	2 cut(s)	178, 688
Hpy8I	GTNNAC	2 cut(s)	435, 555
HpyAV	CCTTC	3 cut(s)	396, 419, 573
HpyCH4III	ACNGT	3 cut(s)	169, 238, 526
HpyCH4V	TGCA	3 cut(s)	41, 346, 499
HpyF10VI	GCNNNNNNNGC	7 cut(s)	195, 311, 320, 329, 352, 671, 674
HpyF3I	CTNAG	3 cut(s)	306, 473, 483
Hsp92I	GRCGYC	1 cut(s)	330
Hsp92II	CATG	3 cut(s)	58, 82, 164
HspAI	GCGC	1 cut(s)	330
KasI	GGCGCC	1 cut(s)	329
KroI	GCCGGC	1 cut(s)	254
KroNI	GCCGGC	1 cut(s)	256
Kzo9I	GATC	1 cut(s)	279
LmnI	GCTCC	3 cut(s)	320, 625, 662
Lsp1109I	GCAGC	3 cut(s)	38, 661, 677
LweI	GCATC	2 cut(s)	28, 342
MaeI	CTAG	1 cut(s)	126
MalI	GATC	1 cut(s)	281
MboI	GATC	1 cut(s)	279
MboII	GAAGA	2 cut(s)	16, 676
MluCI	AATT	2 cut(s)	42, 657
Mly113I	GGCGCC	1 cut(s)	330
MnlI	CCTC	3 cut(s)	238, 269, 711
MroNI	GCCGGC	1 cut(s)	254
MseI	TTAA	2 cut(s)	513, 656
MspI	CCGG	3 cut(s)	255, 266, 302
MspR9I	CCNGG	3 cut(s)	266, 267, 302
MwoI	GCNNNNNNNGC	7 cut(s)	195, 311, 320, 329, 352, 671, 674
NaeI	GCCGGC	1 cut(s)	256
NarI	GGCGCC	1 cut(s)	330
NciI	CCSGG	3 cut(s)	266, 267, 302
NdeII	GATC	1 cut(s)	279
NgoMIV	GCCGGC	1 cut(s)	254
NlaIII	CATG	3 cut(s)	58, 82, 164
NlaIV	GGNNCC	3 cut(s)	214, 331, 480
NspI	RCATGY	1 cut(s)	164
PaqCI	CACCTGC	1 cut(s)	314
PdiI	GCCGGC	1 cut(s)	256
PfeI	GAWTC	1 cut(s)	487
PkrI	GCNGC	5 cut(s)	28, 253, 313, 667, 676
PluTI	GGCGCC	1 cut(s)	333
PpuMI	RGGWCCY	3 cut(s)	129, 479, 560
Psp5II	RGGWCCY	3 cut(s)	129, 479, 560
PspFI	CCCAGC	1 cut(s)	591
PspN4I	GGNNCC	3 cut(s)	214, 331, 480
PspPI	GGNCC	8 cut(s)	71, 129, 175, 292, 383, 479, 560, 650
PspPPI	RGGWCCY	3 cut(s)	129, 479, 560
RsaI	GTAC	2 cut(s)	248, 554
RsaNI	GTAC	2 cut(s)	247, 553
SaqAI	TTAA	2 cut(s)	513, 656
SatI	GCNGC	5 cut(s)	27, 252, 312, 666, 675
Sau3AI	GATC	1 cut(s)	279
Sau96I	GGNCC	8 cut(s)	71, 129, 175, 292, 383, 479, 560, 650
ScrFI	CCNGG	3 cut(s)	266, 267, 302
SfaNI	GCATC	2 cut(s)	28, 342
SfoI	GGCGCC	1 cut(s)	331
SinI	GGWCC	6 cut(s)	129, 175, 292, 479, 560, 650
SmaI	CCCGGG	1 cut(s)	267
Sse9I	AATT	2 cut(s)	42, 657
SsiI	CCGC	4 cut(s)	252, 290, 311, 318
SspDI	GGCGCC	1 cut(s)	329
SspMI	CTAG	1 cut(s)	126
StyD4I	CCNGG	3 cut(s)	264, 265, 300
StyI	CCWWGG	2 cut(s)	132, 333
TaaI	ACNGT	3 cut(s)	169, 238, 526
TasI	AATT	2 cut(s)	42, 657
TauI	GCSGC	2 cut(s)	254, 314
TfiI	GAWTC	1 cut(s)	487
Tru1I	TTAA	2 cut(s)	513, 656
Tru9I	TTAA	2 cut(s)	513, 656
TscAI	CASTG	1 cut(s)	241
TseI	GCWGC	3 cut(s)	26, 665, 674
TspDTI	ATGAA	6 cut(s)	17, 55, 96, 136, 381, 584
TspMI	CCCGGG	1 cut(s)	265
TspRI	CASTG	1 cut(s)	241
VpaK11BI	GGWCC	6 cut(s)	129, 175, 292, 479, 560, 650
XceI	RCATGY	1 cut(s)	164
XmaI	CCCGGG	1 cut(s)	265
XspI	CTAG	1 cut(s)	126

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.