Rw2G049470
WRKY Family

WRKY transcription factor

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
Physical Location & Seq
Forward (+)
77058443 .. 77061501
3059 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G049470.1

Sequence Viewer

Length: 1521 bp
ATGGCGGCTAAGCACCAGGACTCAATTTCAGCACCGCAACCTCAGCGGCCGGTTATAACACTCCCTCCGAGGCCTTCGGCGGAGGCCCTTTTCGGCGGCGGATCTGGAGCCAGCCCGGGTCCGATGACCCTGGTCTCAAGCTTCTTCTCCGACTCAGGTTGTGACTCCGAGTTCAGGTCCTTCTCTCAGCTTCTTGCTGGAGCTATGGGGTCGCCTTTGGGGCAAGCCAGGCCAATCATGTTTGGACAGAACCAAAACCCAGTTGGTAAAGAAGGTGGTGCCTCTGAAAATGGAGGTGAGAAGAGTTCTGGGTTTAAGCAGGGTAGGCCTATGAATTTGATGGTGACTCACTCGCCATTGTTTACTGTCCCACCTGGGATGAGTAATTTCCCATTTGGAATATCACACCAGCAGGCCTTGGCACATGTCACTGCACTAGCTCAATCTAATATGCAGATGCAAGCTGATTATCAATCTTCTTTAGTAGCAGCTCCCACAGAGTCGCAGACAAGTAATCCGCCCTCAAACCCCAATGAAGCTTCTCAACAGCAGACAGCACCCTCAACATCTGAACTTGGAAGTTCTATGGTGCAATCATCAGAGGCCTCTCATCCTGATAAAAAATACCCTTCATCCCATGCCACTGATAAACCTGCAGATGATCGTTATAACTGGCGAAAATATGGGCAGAAGCAGGTTAAGGGCAGTGAATATCCGCGAAGCTACTATAAATGCACACATCTGAACTGTCCTGTCAAAAAGAAAGTTGAGCGTTCTCCTACTGGCGAAATAACTGAGATTATCTACAAAGGGCAACATAACCATGATCCACCTCAACCCAATAAACGTGCAAAAGATGGTGGTGGTCAGAATGGACATATGGATTCTCAGCCTAAGCTTGAAAATGGTTTACAAAGAAGGGTTGGAGATTCAAACAGGTCTTCTGAAGCTGTGCCTGAGAGGGATTATGAGCACACTCAAACTGCTCCTGTGCAGTTACCAAGTGACAGTGAAGACTTGGGTGATGCGGAAACCAGAGAAGAAGGGGATGTTGATGAACCTAATCCAAAGAGAAGGAACATTGATGGTGTTGCATCTGAGGTAGCTTTGCCTCACAAGACGGTGACAGAACCTAAAATCATTGTGCAAACAAGGAGTGAAGTTGATCTTCTTGATGATGGTTACAGGTGGAGAAAGTATGGGCAGAAAGTAGTCAAAGGGAATCCTCATCCAAGAAGTTATTACAAGTGTACATACAACGGATGCAATGTGCGGAAGCATGTTGAGAGAGCTGCCAGTGACCCCAAAGCTGTCATAACCACATACGAGGGGAAACACAACCACGATGTTCCAGCAGCTAGAAACAGTAGCCACAACATAGCCAATAACAATGCCTCACAGTTCAAGCCACCCACAGTTGTGGCAGCCGAGAAGCATCCCCTACTTAAAGGGAGAGAGTTTGGCAACAATGACCAGAGACCGGTACTTCTTCAGCTGAAAGAAGAACAAATCGCCGTGTAA

Protein Analysis

506

Amino Acids

55.23

Weight (kDa)

8.12

Isoelectric Point (pI)

58.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WRKY PF03106 220 - 276 6e-26 WRKY DNA -binding domain
WRKY PF03106 392 - 449 9.2e-27 WRKY DNA -binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 56, 669
Acc36I ACCTGC 2 cut(s) 661, 685
AccB1I GGYRCC 1 cut(s) 278
AccII CGCG 1 cut(s) 718
AclWI GGATC 2 cut(s) 109, 821
AcoI YGGCCR 1 cut(s) 47
AcsI RAATTY 1 cut(s) 334
AcuI CTGAAG 2 cut(s) 966, 1475
AfaI GTAC 2 cut(s) 1252, 1485
AfiI CCNNNNNNNGG 2 cut(s) 174, 1480
AflIII ACRYGT 1 cut(s) 424
AgeI ACCGGT 1 cut(s) 1480
AgsI TTSAA 3 cut(s) 902, 933, 1405
AjnI CCWGG 4 cut(s) 15, 129, 227, 373
AleI CACNNNNGTG 1 cut(s) 1418
Alw21I GWGCWC 1 cut(s) 975
Alw26I GTCTC 2 cut(s) 139, 1471
AlwI GGATC 2 cut(s) 109, 821
Ama87I CYCGRG 1 cut(s) 115
AoxI GGCC 7 cut(s) 47, 71, 84, 230, 326, 414, 603
ApeKI GCWGC 4 cut(s) 488, 1292, 1355, 1424
ApoI RAATTY 1 cut(s) 334
AsiGI ACCGGT 1 cut(s) 1480
AspS9I GGNCC 3 cut(s) 85, 119, 177
AsuC2I CCSGG 2 cut(s) 116, 117
AsuHPI GGTGA 4 cut(s) 308, 355, 1034, 1135
AvaI CYCGRG 1 cut(s) 115
AvaII GGWCC 2 cut(s) 119, 177
BanI GGYRCC 1 cut(s) 278
BbsI GAAGAC 2 cut(s) 933, 1020
Bbv12I GWGCWC 1 cut(s) 975
BbvCI CCTCAGC 1 cut(s) 42
BbvI GCAGC 4 cut(s) 500, 1279, 1367, 1436
BccI CCATC 4 cut(s) 334, 851, 1079, 1172
BceAI ACGGC 1 cut(s) 1499
BciT130I CCWGG 4 cut(s) 17, 131, 229, 375
BcnI CCSGG 2 cut(s) 116, 117
BcoDI GTCTC 2 cut(s) 139, 1471
BfaI CTAG 2 cut(s) 437, 1359
BfmI CTRYAG 1 cut(s) 654
BfuAI ACCTGC 2 cut(s) 661, 685
BglI GCCNNNNNGGC 1 cut(s) 220
BisI GCNGC 7 cut(s) 6, 47, 97, 489, 1293, 1356, 1425
BlpI GCTNAGC 1 cut(s) 9
BlsI GCNGC 7 cut(s) 7, 48, 98, 490, 1294, 1357, 1426
Bme1390I CCNGG 6 cut(s) 17, 116, 117, 131, 229, 375
Bme18I GGWCC 2 cut(s) 119, 177
BmeT110I CYCGRG 1 cut(s) 115
BmgT120I GGNCC 3 cut(s) 85, 119, 177
BmiI GGNNCC 3 cut(s) 109, 120, 280
BmrFI CCNGG 6 cut(s) 17, 116, 117, 131, 229, 375
BmrI ACTGGG 1 cut(s) 254
BmsI GCATC 5 cut(s) 447, 1015, 1103, 1253, 1444
BmuI ACTGGG 1 cut(s) 254
BoxI GACNNNNGTC 1 cut(s) 131
BpiI GAAGAC 2 cut(s) 933, 1020
BpmI CTGGAG 2 cut(s) 126, 219
Bpu10I CCTNAGC 2 cut(s) 42, 894
Bpu1102I GCTNAGC 1 cut(s) 9
BpuEI CTTGAG 1 cut(s) 121
BpuMI CCSGG 2 cut(s) 116, 117
BsaI GGTCTC 2 cut(s) 139, 1471
BsaJI CCNNGG 5 cut(s) 68, 115, 129, 374, 417
BsaWI WCCGGW 1 cut(s) 1480
BsaXI ACNNNNNCTCC 2 cut(s) 49, 79
Bsc4I CCNNNNNNNGG 2 cut(s) 174, 1480
Bse118I RCCGGY 2 cut(s) 49, 1480
Bse1I ACTGG 4 cut(s) 260, 677, 787, 1296
Bse3DI GCAATG 1 cut(s) 1273
BseBI CCWGG 4 cut(s) 17, 131, 229, 375
BseDI CCNNGG 5 cut(s) 68, 115, 129, 374, 417
BseGI GGATG 7 cut(s) 384, 610, 632, 1054, 1228, 1268, 1435
BseLI CCNNNNNNNGG 2 cut(s) 174, 1480
BseMI GCAATG 1 cut(s) 1273
BseMII CTCAG 7 cut(s) 56, 168, 200, 786, 902, 948, 1089
BseNI ACTGG 4 cut(s) 260, 677, 787, 1296
BseX3I CGGCCG 1 cut(s) 47
BseXI GCAGC 4 cut(s) 500, 1279, 1367, 1436
BsgI GTGCAG 2 cut(s) 417, 1013
Bsh1236I CGCG 1 cut(s) 718
Bsh1285I CGRYCG 1 cut(s) 50
BshFI GGCC 7 cut(s) 49, 73, 86, 232, 328, 416, 605
BshNI GGYRCC 1 cut(s) 278
BshTI ACCGGT 1 cut(s) 1480
BsiEI CGRYCG 1 cut(s) 50
BsiHKAI GWGCWC 1 cut(s) 975
BsiHKCI CYCGRG 1 cut(s) 115
BsiSI CCGG 3 cut(s) 50, 116, 1481
BslFI GGGAC 1 cut(s) 353
BslI CCNNNNNNNGG 2 cut(s) 174, 1480
BsmAI GTCTC 2 cut(s) 139, 1471
BsmFI GGGAC 1 cut(s) 353
BsnI GGCC 7 cut(s) 49, 73, 86, 232, 328, 416, 605
Bso31I GGTCTC 2 cut(s) 139, 1471
BsoBI CYCGRG 1 cut(s) 115
Bsp1286I GDGCHC 1 cut(s) 975
Bsp1407I TGTACA 1 cut(s) 1250
Bsp143I GATC 4 cut(s) 101, 661, 826, 1165
Bsp1720I GCTNAGC 1 cut(s) 9
BspANI GGCC 7 cut(s) 49, 73, 86, 232, 328, 416, 605
BspCNI CTCAG 7 cut(s) 55, 167, 199, 787, 901, 949, 1090
BspFNI CGCG 1 cut(s) 718
BspLI GGNNCC 3 cut(s) 109, 120, 280
BspMAI CTGCAG 1 cut(s) 658
BspMI ACCTGC 2 cut(s) 661, 685
BspPI GGATC 2 cut(s) 109, 821
BspT107I GGYRCC 1 cut(s) 278
BspTNI GGTCTC 2 cut(s) 139, 1471
BsrDI GCAATG 1 cut(s) 1273
BsrFI RCCGGY 2 cut(s) 49, 1480
BsrGI TGTACA 1 cut(s) 1250
BsrI ACTGG 4 cut(s) 260, 677, 787, 1296
BssAI RCCGGY 2 cut(s) 49, 1480
BssECI CCNNGG 5 cut(s) 68, 115, 129, 374, 417
BssMI GATC 4 cut(s) 101, 661, 826, 1165
BssT1I CCWWGG 1 cut(s) 417
Bst2UI CCWGG 4 cut(s) 17, 131, 229, 375
Bst4CI ACNGT 7 cut(s) 367, 749, 1010, 1123, 1367, 1401, 1417
Bst6I CTCTTC 1 cut(s) 296
BstAUI TGTACA 1 cut(s) 1250
BstC8I GCNNGC 4 cut(s) 112, 225, 414, 462
BstDEI CTNAG 9 cut(s) 9, 42, 154, 186, 795, 888, 894, 957, 1098
BstF5I GGATG 7 cut(s) 384, 610, 632, 1054, 1228, 1268, 1435
BstFNI CGCG 1 cut(s) 718
BstKTI GATC 4 cut(s) 104, 664, 829, 1168
BstMAI GTCTC 2 cut(s) 139, 1471
BstMBI GATC 4 cut(s) 101, 661, 826, 1165
BstMCI CGRYCG 1 cut(s) 50
BstMWI GCNNNNNNNGC 4 cut(s) 43, 220, 229, 325
BstNI CCWGG 4 cut(s) 17, 131, 229, 375
BstNSI RCATGY 2 cut(s) 428, 1283
BstPAI GACNNNNGTC 1 cut(s) 131
BstSCI CCNGG 6 cut(s) 15, 114, 115, 129, 227, 373
BstSFI CTRYAG 1 cut(s) 654
BstUI CGCG 1 cut(s) 718
BstV1I GCAGC 4 cut(s) 500, 1279, 1367, 1436
BstV2I GAAGAC 2 cut(s) 933, 1020
BstX2I RGATCY 1 cut(s) 101
BstXI CCANNNNNNTGG 1 cut(s) 1420
BstYI RGATCY 1 cut(s) 101
BstZI CGGCCG 1 cut(s) 47
BsuRI GGCC 7 cut(s) 49, 73, 86, 232, 328, 416, 605
BtsCI GGATG 7 cut(s) 384, 610, 632, 1054, 1228, 1268, 1435
BtsI GCAGTG 2 cut(s) 429, 712
BtsIMutI CAGTG 5 cut(s) 429, 642, 712, 1015, 1303
BveI ACCTGC 2 cut(s) 661, 685
Cac8I GCNNGC 4 cut(s) 112, 225, 414, 462
Cfr10I RCCGGY 2 cut(s) 49, 1480
Cfr13I GGNCC 3 cut(s) 85, 119, 177
Cfr9I CCCGGG 1 cut(s) 115
Csp6I GTAC 2 cut(s) 1251, 1484
CspAI ACCGGT 1 cut(s) 1480
CviAII CATG 5 cut(s) 238, 425, 638, 824, 1280
CviQI GTAC 2 cut(s) 1251, 1484
DdeI CTNAG 9 cut(s) 9, 42, 154, 186, 795, 888, 894, 957, 1098
DpnI GATC 4 cut(s) 103, 663, 828, 1167
DpnII GATC 4 cut(s) 101, 661, 826, 1165
EaeI YGGCCR 1 cut(s) 47
EagI CGGCCG 1 cut(s) 47
Eam1104I CTCTTC 1 cut(s) 296
EarI CTCTTC 1 cut(s) 296
EciI GGCGGA 3 cut(s) 95, 114, 507
EclXI CGGCCG 1 cut(s) 47
Eco130I CCWWGG 1 cut(s) 417
Eco147I AGGCCT 4 cut(s) 73, 328, 416, 605
Eco31I GGTCTC 2 cut(s) 139, 1471
Eco47I GGWCC 2 cut(s) 119, 177
Eco52I CGGCCG 1 cut(s) 47
Eco57I CTGAAG 2 cut(s) 966, 1475
Eco88I CYCGRG 1 cut(s) 115
EcoO109I RGGNCCY 2 cut(s) 85, 177
EcoRII CCWGG 4 cut(s) 15, 129, 227, 373
EcoT14I CCWWGG 1 cut(s) 417
ErhI CCWWGG 1 cut(s) 417
FaeI CATG 5 cut(s) 241, 428, 641, 827, 1283
FalI AAGNNNNNCTT 2 cut(s) 1152, 1184
FaqI GGGAC 1 cut(s) 353
FatI CATG 5 cut(s) 237, 424, 637, 823, 1279
FauNDI CATATG 1 cut(s) 879
Fnu4HI GCNGC 7 cut(s) 6, 47, 97, 489, 1293, 1356, 1425
FokI GGATG 7 cut(s) 391, 597, 619, 1061, 1215, 1275, 1422
Fsp4HI GCNGC 7 cut(s) 6, 47, 97, 489, 1293, 1356, 1425
FspBI CTAG 2 cut(s) 437, 1359
GluI GCNGC 7 cut(s) 6, 47, 97, 489, 1293, 1356, 1425
GsuI CTGGAG 2 cut(s) 126, 219
HaeIII GGCC 7 cut(s) 49, 73, 86, 232, 328, 416, 605
HapII CCGG 3 cut(s) 50, 116, 1481
Hin1II CATG 5 cut(s) 241, 428, 641, 827, 1283
HindIII AAGCTT 3 cut(s) 139, 537, 896
HinfI GANTC 8 cut(s) 20, 152, 164, 346, 500, 884, 929, 1222
HpaII CCGG 3 cut(s) 50, 116, 1481
HphI GGTGA 4 cut(s) 308, 355, 1034, 1135
Hpy166II GTNNAC 3 cut(s) 363, 911, 1251
Hpy188III TCNNGA 3 cut(s) 105, 614, 1172
Hpy8I GTNNAC 3 cut(s) 363, 911, 1251
HpyAV CCTTC 7 cut(s) 84, 190, 266, 639, 912, 1037, 1068
HpyCH4III ACNGT 7 cut(s) 367, 749, 1010, 1123, 1367, 1401, 1417
HpyCH4IV ACGT 1 cut(s) 847
HpyF10VI GCNNNNNNNGC 4 cut(s) 43, 220, 229, 325
HpyF3I CTNAG 9 cut(s) 9, 42, 154, 186, 795, 888, 894, 957, 1098
HpySE526I ACGT 1 cut(s) 847
Hsp92II CATG 5 cut(s) 241, 428, 641, 827, 1283
Kzo9I GATC 4 cut(s) 101, 661, 826, 1165
LmnI GCTCC 4 cut(s) 107, 200, 496, 991
Lsp1109I GCAGC 4 cut(s) 500, 1279, 1367, 1436
LweI GCATC 5 cut(s) 447, 1015, 1103, 1253, 1444
MaeI CTAG 2 cut(s) 437, 1359
MaeII ACGT 1 cut(s) 847
MaeIII GTNAC 8 cut(s) 161, 343, 427, 996, 1004, 1123, 1181, 1298
MalI GATC 4 cut(s) 103, 663, 828, 1167
MboI GATC 4 cut(s) 101, 661, 826, 1165
MboII GAAGA 9 cut(s) 136, 313, 468, 933, 1025, 1052, 1160, 1481, 1514
MflI RGATCY 1 cut(s) 101
MhlI GDGCHC 1 cut(s) 975
MluCI AATT 3 cut(s) 24, 334, 385
MlyI GAGTC 5 cut(s) 14, 146, 158, 340, 509
MmeI TCCRAC 2 cut(s) 174, 904
MseI TTAA 3 cut(s) 315, 699, 1446
MslI CAYNNNNRTG 2 cut(s) 822, 1418
MspA1I CMGCKG 2 cut(s) 46, 1495
MspI CCGG 3 cut(s) 50, 116, 1481
MspR9I CCNGG 6 cut(s) 17, 116, 117, 131, 229, 375
MvaI CCWGG 4 cut(s) 17, 131, 229, 375
MvnI CGCG 1 cut(s) 718
MwoI GCNNNNNNNGC 4 cut(s) 43, 220, 229, 325
NciI CCSGG 2 cut(s) 116, 117
NdeI CATATG 1 cut(s) 879
NdeII GATC 4 cut(s) 101, 661, 826, 1165
NlaIII CATG 5 cut(s) 241, 428, 641, 827, 1283
NlaIV GGNNCC 3 cut(s) 109, 120, 280
NmeAIII GCCGAG 1 cut(s) 1453
NmuCI GTSAC 6 cut(s) 161, 343, 427, 1004, 1123, 1298
NspI RCATGY 2 cut(s) 428, 1283
OliI CACNNNNGTG 1 cut(s) 1418
PceI AGGCCT 4 cut(s) 73, 328, 416, 605
PciI ACATGT 1 cut(s) 424
PfeI GAWTC 3 cut(s) 884, 929, 1222
PinAI ACCGGT 1 cut(s) 1480
PkrI GCNGC 7 cut(s) 7, 48, 98, 490, 1294, 1357, 1426
PleI GAGTC 5 cut(s) 14, 146, 158, 340, 508
PpsI GAGTC 5 cut(s) 14, 146, 158, 340, 508
PpuMI RGGWCCY 1 cut(s) 177
PscI ACATGT 1 cut(s) 424
PshAI GACNNNNGTC 1 cut(s) 131
PsiI TTATAA 2 cut(s) 56, 669
Psp5II RGGWCCY 1 cut(s) 177
Psp6I CCWGG 4 cut(s) 15, 129, 227, 373
PspGI CCWGG 4 cut(s) 15, 129, 227, 373
PspN4I GGNNCC 3 cut(s) 109, 120, 280
PspPI GGNCC 3 cut(s) 85, 119, 177
PspPPI RGGWCCY 1 cut(s) 177
PstI CTGCAG 1 cut(s) 658
PsuI RGATCY 1 cut(s) 101
PvuII CAGCTG 1 cut(s) 1495
RsaI GTAC 2 cut(s) 1252, 1485
RsaNI GTAC 2 cut(s) 1251, 1484
RseI CAYNNNNRTG 2 cut(s) 822, 1418
SaqAI TTAA 3 cut(s) 315, 699, 1446
SatI GCNGC 7 cut(s) 6, 47, 97, 489, 1293, 1356, 1425
Sau3AI GATC 4 cut(s) 101, 661, 826, 1165
Sau96I GGNCC 3 cut(s) 85, 119, 177
SchI GAGTC 5 cut(s) 14, 146, 158, 340, 509
ScrFI CCNGG 6 cut(s) 17, 116, 117, 131, 229, 375
SduI GDGCHC 1 cut(s) 975
SfaNI GCATC 5 cut(s) 447, 1015, 1103, 1253, 1444
SfcI CTRYAG 1 cut(s) 654
SinI GGWCC 2 cut(s) 119, 177
SmaI CCCGGG 1 cut(s) 117
SmiMI CAYNNNNRTG 2 cut(s) 822, 1418
SmlI CTYRAG 1 cut(s) 136
SmoI CTYRAG 1 cut(s) 136
Sse9I AATT 3 cut(s) 24, 334, 385
SseBI AGGCCT 4 cut(s) 73, 328, 416, 605
SspMI CTAG 2 cut(s) 437, 1359
StuI AGGCCT 4 cut(s) 73, 328, 416, 605
StyD4I CCNGG 6 cut(s) 15, 114, 115, 129, 227, 373
StyI CCWWGG 1 cut(s) 417
TaaI ACNGT 7 cut(s) 367, 749, 1010, 1123, 1367, 1401, 1417
TaiI ACGT 1 cut(s) 850
TasI AATT 3 cut(s) 24, 334, 385
TatI WGTACW 1 cut(s) 1250
TauI GCSGC 3 cut(s) 8, 49, 99
TfiI GAWTC 3 cut(s) 884, 929, 1222
Tru1I TTAA 3 cut(s) 315, 699, 1446
Tru9I TTAA 3 cut(s) 315, 699, 1446
TscAI CASTG 5 cut(s) 436, 649, 712, 1015, 1303
TseFI GTSAC 6 cut(s) 161, 343, 427, 1004, 1123, 1298
TseI GCWGC 4 cut(s) 488, 1292, 1355, 1424
Tsp45I GTSAC 6 cut(s) 161, 343, 427, 1004, 1123, 1298
TspDTI ATGAA 4 cut(s) 347, 549, 621, 1071
TspGWI ACGGA 1 cut(s) 1275
TspMI CCCGGG 1 cut(s) 115
TspRI CASTG 5 cut(s) 436, 649, 712, 1015, 1303
VpaK11BI GGWCC 2 cut(s) 119, 177
XapI RAATTY 1 cut(s) 334
XceI RCATGY 2 cut(s) 428, 1283
XcmI CCANNNNNNNNNTGG 1 cut(s) 260
XmaI CCCGGG 1 cut(s) 115
XspI CTAG 2 cut(s) 437, 1359
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.