Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0010588

Physical Location & Seq

Genomic Coordinates Forward (+)

82507594 .. 82511796

Gene Structure 4203 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG594100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1140 bp

ATGCAGAGCCCATTTGGAATATCACACCAGCAGGCCTTGGCACATGTCACTGCACTAGCTCAATCTAATATGCAGATGCAAGCTGATTATCAATCTTCTTTAGTAGCAGCTCCCACAGAGTCGCAGACAAGTAATCCGCCCTCAAACCCCAATGAAGCTTCTCAACAGCAGACAGCACCCTCAACATCTGAACTTGGAAGTTCTATGGTGCAATCATCAGAGGCATCTCATCCTGATAAAAAATACCCTTCATCCCATGCCACTGATAAACCTGCAGATGATCGTTATAACTGGCGAAAATATGGGCAGAAGCAGGTTAAGGGCAGTGAATATCCGCGAAGCTACTATAAATGCACACATCTGAACTGTCCTGTCAAAAAGAAAGTTGAGCGTTCTCCTAGTGGCGAAATAACTGAGATTATCTACAAAGGGCAACATAACCATGAGCCACCTCAACCCAATAAACGTGCAAAAGATGGTGGTGGTCAGAATGGACATATGGATTCTCAGCCTAAGCTTGAAAATGGTTTACAAAGAAGGGTTGGAGATTCAAACAGGTCTTCTGAAGCAGTGCCTGAGAGGGATTATGAGCACACTCAAACTGCTCCTGTGCAGTTACCAAGTGACAGTGAAGACTTGGGTGATGCGGAAACCAGAGAAGAAGGGGATGTTGATGAACCTAATCCAAAGAGAAGGAACATTGATGGTGTTGCATCTGAGGTAGCTTTGCCTCACAAGACGGTGACAGAACCTAAAATCATTGTGCAAACAAGGAGTGAAGTTGATCTTCTTGATGATGGTTACAGGTGGAGAAAGTATGGGCAGAAAGTAGTCAAAGGGAATCCTCATCCAAGAAGTTATTACAAGTGCACATACAACGGATGCAATGTGCGCAAGCATGTTGAGAGAGCTGCCAGTGACCCCAAAGCTGTCATAACCACATACGAGGGCAAACACAACCACGATGTTCCAGCAGCTAGAAACAGTAGCCACAACATAGCCAATAACAACGCCTCACAGTTCAAGCCACCCACAGTTGTGGCAGCCGAGAAGCATCCCCTACTAAAAGGGAGAGAGTTTGGCAACAATGACCAGAGACCGGTACTTCTTCAGCTGAAAGAAGAACAAATCGCCGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

379

Amino Acids

42.17

Weight (kDa)

7.74

Isoelectric Point (pI)

60.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WRKY	PF03106	93 - 149	3.3e-26	WRKY DNA -binding domain
WRKY	PF03106	265 - 322	6e-27	WRKY DNA -binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010588)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g47800 FvH4_6g47800 FvH4_6g47800
malus_domestica	MD09G1056600.v1.1 MD17G1054100.v1.1
prunus_persica	Prupe.3G262100_v2.0.a1
pyrus_communis	pycom111g04740
rosa_chinensis	RchiOBHm_Chr2g0166991
rosa_laevigata	RLG00000021687
rosa_multiflora	Rmu_sc0010966.1_g000003 Rmu_sc0010966.1_g000004 Rmu_sc0025421.1_g000004
rosa_roxburghii	Rroxscaffold_2G00083830
rosa_rugosa	Rorug02G0527200 Rorug02G0527300 Rorug02G0527300
rosa_samantha	Rh2AG594100 Rh2BG605600 Rh2CG576500 Rh2DG617100
rosa_wichuraiana	Rw2G049470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	288
Acc16I	TGCGCA	1 cut(s)	893
Acc36I	ACCTGC	2 cut(s)	280, 304
AccII	CGCG	1 cut(s)	337
AciI	CCGC	3 cut(s)	137, 335, 647
AcuI	CTGAAG	2 cut(s)	585, 1094
AfaI	GTAC	1 cut(s)	1104
AfiI	CCNNNNNNNGG	1 cut(s)	1099
AflIII	ACRYGT	1 cut(s)	43
AgeI	ACCGGT	1 cut(s)	1099
AgsI	TTSAA	3 cut(s)	521, 552, 1024
AleI	CACNNNNGTG	1 cut(s)	1037
Alw21I	GWGCWC	2 cut(s)	594, 872
Alw26I	GTCTC	1 cut(s)	1090
Alw44I	GTGCAC	1 cut(s)	868
AlwNI	CAGNNNCTG	1 cut(s)	575
AoxI	GGCC	1 cut(s)	33
ApaLI	GTGCAC	1 cut(s)	868
ApeKI	GCWGC	4 cut(s)	107, 911, 974, 1043
AsiGI	ACCGGT	1 cut(s)	1099
AspLEI	GCGC	1 cut(s)	894
AsuHPI	GGTGA	2 cut(s)	653, 754
BaeGI	GKGCMC	1 cut(s)	872
BanII	GRGCYC	1 cut(s)	11
BbsI	GAAGAC	2 cut(s)	552, 639
Bbv12I	GWGCWC	2 cut(s)	594, 872
BbvI	GCAGC	4 cut(s)	119, 898, 986, 1055
BccI	CCATC	3 cut(s)	470, 698, 791
BceAI	ACGGC	1 cut(s)	1118
BcoDI	GTCTC	1 cut(s)	1090
BfaI	CTAG	3 cut(s)	56, 399, 978
BfmI	CTRYAG	1 cut(s)	273
BfuAI	ACCTGC	2 cut(s)	280, 304
BisI	GCNGC	4 cut(s)	108, 912, 975, 1044
BlsI	GCNGC	4 cut(s)	109, 913, 976, 1045
BmsI	GCATC	6 cut(s)	66, 233, 634, 722, 872, 1063
BpiI	GAAGAC	2 cut(s)	552, 639
Bpu10I	CCTNAGC	1 cut(s)	513
BsaI	GGTCTC	1 cut(s)	1090
BsaJI	CCNNGG	1 cut(s)	36
BsaWI	WCCGGW	1 cut(s)	1099
Bsc4I	CCNNNNNNNGG	1 cut(s)	1099
Bse118I	RCCGGY	1 cut(s)	1099
Bse1I	ACTGG	2 cut(s)	296, 915
Bse3DI	GCAATG	1 cut(s)	892
BseDI	CCNNGG	1 cut(s)	36
BseGI	GGATG	6 cut(s)	229, 251, 673, 847, 887, 1054
BseLI	CCNNNNNNNGG	1 cut(s)	1099
BseMI	GCAATG	1 cut(s)	892
BseMII	CTCAG	4 cut(s)	405, 521, 567, 708
BseNI	ACTGG	2 cut(s)	296, 915
BseSI	GKGCMC	1 cut(s)	872
BseXI	GCAGC	4 cut(s)	119, 898, 986, 1055
BsgI	GTGCAG	2 cut(s)	36, 632
Bsh1236I	CGCG	1 cut(s)	337
BshFI	GGCC	1 cut(s)	35
BshTI	ACCGGT	1 cut(s)	1099
BsiHKAI	GWGCWC	2 cut(s)	594, 872
BsiSI	CCGG	1 cut(s)	1100
BslI	CCNNNNNNNGG	1 cut(s)	1099
BsmAI	GTCTC	1 cut(s)	1090
BsnI	GGCC	1 cut(s)	35
Bso31I	GGTCTC	1 cut(s)	1090
Bsp1286I	GDGCHC	3 cut(s)	11, 594, 872
Bsp143I	GATC	2 cut(s)	280, 784
BspACI	CCGC	3 cut(s)	137, 335, 647
BspANI	GGCC	1 cut(s)	35
BspCNI	CTCAG	4 cut(s)	406, 520, 568, 709
BspFNI	CGCG	1 cut(s)	337
BspMAI	CTGCAG	1 cut(s)	277
BspMI	ACCTGC	2 cut(s)	280, 304
BspTNI	GGTCTC	1 cut(s)	1090
BsrDI	GCAATG	1 cut(s)	892
BsrFI	RCCGGY	1 cut(s)	1099
BsrI	ACTGG	2 cut(s)	296, 915
BssAI	RCCGGY	1 cut(s)	1099
BssECI	CCNNGG	1 cut(s)	36
BssMI	GATC	2 cut(s)	280, 784
BssT1I	CCWWGG	1 cut(s)	36
Bst4CI	ACNGT	6 cut(s)	368, 629, 742, 986, 1020, 1036
BstC8I	GCNNGC	3 cut(s)	33, 81, 896
BstDEI	CTNAG	5 cut(s)	414, 507, 513, 576, 717
BstF5I	GGATG	6 cut(s)	229, 251, 673, 847, 887, 1054
BstFNI	CGCG	1 cut(s)	337
BstHHI	GCGC	1 cut(s)	894
BstKTI	GATC	2 cut(s)	283, 787
BstMAI	GTCTC	1 cut(s)	1090
BstMBI	GATC	2 cut(s)	280, 784
BstMWI	GCNNNNNNNGC	1 cut(s)	891
BstNSI	RCATGY	2 cut(s)	47, 902
BstSFI	CTRYAG	1 cut(s)	273
BstSLI	GKGCMC	1 cut(s)	872
BstUI	CGCG	1 cut(s)	337
BstV1I	GCAGC	4 cut(s)	119, 898, 986, 1055
BstV2I	GAAGAC	2 cut(s)	552, 639
BstXI	CCANNNNNNTGG	1 cut(s)	1039
BsuRI	GGCC	1 cut(s)	35
BtsCI	GGATG	6 cut(s)	229, 251, 673, 847, 887, 1054
BtsI	GCAGTG	3 cut(s)	48, 331, 576
BtsIMutI	CAGTG	6 cut(s)	48, 261, 331, 576, 634, 922
BveI	ACCTGC	2 cut(s)	280, 304
Cac8I	GCNNGC	3 cut(s)	33, 81, 896
CaiI	CAGNNNCTG	1 cut(s)	575
CfoI	GCGC	1 cut(s)	894
Cfr10I	RCCGGY	1 cut(s)	1099
Csp6I	GTAC	1 cut(s)	1103
CspAI	ACCGGT	1 cut(s)	1099
CviAII	CATG	4 cut(s)	44, 257, 443, 899
CviQI	GTAC	1 cut(s)	1103
DdeI	CTNAG	5 cut(s)	414, 507, 513, 576, 717
DpnI	GATC	2 cut(s)	282, 786
DpnII	GATC	2 cut(s)	280, 784
EciI	GGCGGA	1 cut(s)	126
Eco130I	CCWWGG	1 cut(s)	36
Eco147I	AGGCCT	1 cut(s)	35
Eco24I	GRGCYC	1 cut(s)	11
Eco31I	GGTCTC	1 cut(s)	1090
Eco57I	CTGAAG	2 cut(s)	585, 1094
EcoT14I	CCWWGG	1 cut(s)	36
EcoT38I	GRGCYC	1 cut(s)	11
ErhI	CCWWGG	1 cut(s)	36
FaeI	CATG	4 cut(s)	47, 260, 446, 902
FalI	AAGNNNNNCTT	2 cut(s)	771, 803
FatI	CATG	4 cut(s)	43, 256, 442, 898
FauNDI	CATATG	1 cut(s)	498
Fnu4HI	GCNGC	4 cut(s)	108, 912, 975, 1044
FokI	GGATG	6 cut(s)	216, 238, 680, 834, 894, 1041
FriOI	GRGCYC	1 cut(s)	11
Fsp4HI	GCNGC	4 cut(s)	108, 912, 975, 1044
FspBI	CTAG	3 cut(s)	56, 399, 978
FspI	TGCGCA	1 cut(s)	893
GlaI	GCGC	1 cut(s)	893
GluI	GCNGC	4 cut(s)	108, 912, 975, 1044
HaeIII	GGCC	1 cut(s)	35
HapII	CCGG	1 cut(s)	1100
HhaI	GCGC	1 cut(s)	894
Hin1II	CATG	4 cut(s)	47, 260, 446, 902
Hin6I	GCGC	1 cut(s)	892
HinP1I	GCGC	1 cut(s)	892
HindIII	AAGCTT	2 cut(s)	156, 515
HinfI	GANTC	4 cut(s)	119, 503, 548, 841
HpaII	CCGG	1 cut(s)	1100
HphI	GGTGA	2 cut(s)	653, 754
Hpy166II	GTNNAC	2 cut(s)	530, 870
Hpy188I	TCNGA	6 cut(s)	190, 220, 363, 489, 565, 718
Hpy188III	TCNNGA	2 cut(s)	233, 791
Hpy8I	GTNNAC	2 cut(s)	530, 870
HpyAV	CCTTC	4 cut(s)	258, 531, 656, 687
HpyCH4III	ACNGT	6 cut(s)	368, 629, 742, 986, 1020, 1036
HpyCH4IV	ACGT	1 cut(s)	466
HpyF10VI	GCNNNNNNNGC	1 cut(s)	891
HpyF3I	CTNAG	5 cut(s)	414, 507, 513, 576, 717
HpySE526I	ACGT	1 cut(s)	466
Hsp92II	CATG	4 cut(s)	47, 260, 446, 902
HspAI	GCGC	1 cut(s)	892
Kzo9I	GATC	2 cut(s)	280, 784
LmnI	GCTCC	2 cut(s)	115, 610
Lsp1109I	GCAGC	4 cut(s)	119, 898, 986, 1055
LweI	GCATC	6 cut(s)	66, 233, 634, 722, 872, 1063
MaeI	CTAG	3 cut(s)	56, 399, 978
MaeII	ACGT	1 cut(s)	466
MaeIII	GTNAC	6 cut(s)	46, 615, 623, 742, 800, 917
MalI	GATC	2 cut(s)	282, 786
MboI	GATC	2 cut(s)	280, 784
MboII	GAAGA	7 cut(s)	87, 552, 644, 671, 779, 1100, 1133
MhlI	GDGCHC	3 cut(s)	11, 594, 872
MlyI	GAGTC	1 cut(s)	128
MmeI	TCCRAC	1 cut(s)	523
MseI	TTAA	1 cut(s)	318
MslI	CAYNNNNRTG	2 cut(s)	441, 1037
MspA1I	CMGCKG	1 cut(s)	1114
MspI	CCGG	1 cut(s)	1100
MvnI	CGCG	1 cut(s)	337
MwoI	GCNNNNNNNGC	1 cut(s)	891
NdeI	CATATG	1 cut(s)	498
NdeII	GATC	2 cut(s)	280, 784
NlaIII	CATG	4 cut(s)	47, 260, 446, 902
NmeAIII	GCCGAG	1 cut(s)	1072
NmuCI	GTSAC	4 cut(s)	46, 623, 742, 917
NsbI	TGCGCA	1 cut(s)	893
NspI	RCATGY	2 cut(s)	47, 902
OliI	CACNNNNGTG	1 cut(s)	1037
PceI	AGGCCT	1 cut(s)	35
PciI	ACATGT	1 cut(s)	43
PfeI	GAWTC	3 cut(s)	503, 548, 841
PinAI	ACCGGT	1 cut(s)	1099
PkrI	GCNGC	4 cut(s)	109, 913, 976, 1045
PleI	GAGTC	1 cut(s)	127
PpsI	GAGTC	1 cut(s)	127
PscI	ACATGT	1 cut(s)	43
PsiI	TTATAA	1 cut(s)	288
PstI	CTGCAG	1 cut(s)	277
PstNI	CAGNNNCTG	1 cut(s)	575
PvuII	CAGCTG	1 cut(s)	1114
RsaI	GTAC	1 cut(s)	1104
RsaNI	GTAC	1 cut(s)	1103
RseI	CAYNNNNRTG	2 cut(s)	441, 1037
SaqAI	TTAA	1 cut(s)	318
SatI	GCNGC	4 cut(s)	108, 912, 975, 1044
Sau3AI	GATC	2 cut(s)	280, 784
SchI	GAGTC	1 cut(s)	128
SduI	GDGCHC	3 cut(s)	11, 594, 872
SfaNI	GCATC	6 cut(s)	66, 233, 634, 722, 872, 1063
SfcI	CTRYAG	1 cut(s)	273
SmiMI	CAYNNNNRTG	2 cut(s)	441, 1037
SseBI	AGGCCT	1 cut(s)	35
SsiI	CCGC	3 cut(s)	137, 335, 647
SspMI	CTAG	3 cut(s)	56, 399, 978
StuI	AGGCCT	1 cut(s)	35
StyI	CCWWGG	1 cut(s)	36
TaaI	ACNGT	6 cut(s)	368, 629, 742, 986, 1020, 1036
TaiI	ACGT	1 cut(s)	469
TfiI	GAWTC	3 cut(s)	503, 548, 841
Tru1I	TTAA	1 cut(s)	318
Tru9I	TTAA	1 cut(s)	318
TscAI	CASTG	6 cut(s)	55, 268, 331, 576, 634, 922
TseFI	GTSAC	4 cut(s)	46, 623, 742, 917
TseI	GCWGC	4 cut(s)	107, 911, 974, 1043
Tsp45I	GTSAC	4 cut(s)	46, 623, 742, 917
TspDTI	ATGAA	3 cut(s)	168, 240, 690
TspGWI	ACGGA	1 cut(s)	894
TspRI	CASTG	6 cut(s)	55, 268, 331, 576, 634, 922
VneI	GTGCAC	1 cut(s)	868
XceI	RCATGY	2 cut(s)	47, 902
XspI	CTAG	3 cut(s)	56, 399, 978

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.