Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0010588

Physical Location & Seq

Genomic Coordinates Forward (+)

84760709 .. 84764624

Gene Structure 3916 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG617100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1353 bp

ATGGCGGCTAAGCACCAGGACTCAATTTCAGCACCGCAACCTCAGCGGCCGGTAATATCACTCCCTCCGAGGCCTTCGGCGGAGGCCCTTTTCGGCGGCGGATCTGGAGCCAGCCCGGGTCCGATGACCCTAGTCTCAAGCTTCTTCTCCGACTCAGGGTATGACTCGGAGTTCAGGTCCTTCTCTCAGCTTCTTGCTGGAGCTATGGGGTCGCCTTTGGGGCAAGCCAGGCCAATCATGTTTGGACAGAACCAAAACCCAGTTGGTAAAGAAGGCGGTGGCTCTGAAAATGGAGGTGAGAAGAGTTCTGGGTTTAAGCAGAGTAGGCCTATGAATTTGATGGTGACTCACTCGCCATTGTTTACTGTCCCACCTGGGTTGAGCCCCTCCGGGTTGCTTAACTCGCCTGCGGGGTTCTTTGCACCTCCGAGCCCATTTGGAATATCACACCAGCAGGCCTTGGCACATGTCACTGCACTAGCTCAATCTAATATGCAGATGCAAGCTGATTATCAATCTTCTTTAGTAGCAGCTCCCACTGAGTCGCAGACAAGAAATCCACCCTCAAACCCCAATGAAGCTTCTCAACAGCAGACAGCACCCTCAACATCTGAACTTGGAAGTTCTATGGTGCAATCATCAGAGGCCTCTCATCCTGATAAAAAATACCCTTCATCCCATGCCACTGATAAACCTGCAGATGATCGTTATAACTGGCGAAAATATGGGCAGAAGCAGGTTAAGGGCAGTGAATATCCGCGAAGCTACTATAAATGCACACATCTGAACTGTCCTGTCAAAAAGAAAGTTGAGCGTTCTCCTATTGGCGAAATAACTGAGATTATCTACAAAGGGCAACATAACCATGAGCCACCTCAACCCAATAAACGTGCAAAAGATGGTGGTGGTCAGAATGGACATATGGATTCTCAGCCTAAGCTTGAAAATGGTTTACACAGAAGGGTTGGAGATTCAAACAGGTCTTCTGAAGCCGTGCCTGAGAGGGATTATGAGCACACTCAAACTGCTCCTGTGCAGTTACCAAGTGACAGTGAAGACTTGGGTGATGCGGAAACCAGAGAAGAAGGGGATGTTGATGAACCTAATCCAAAGAGAAGGAACATTGATGGTGTTGCATCTGAGGTAGCTTTGCCTCACAAGACGGTGACAGAACCTAAAATCATTGTGCAAACAAGGAGTGAAGTTGATCTTCTTGATGATGGTTACAGGTGGAGAAAGTATGGGCAGAAAGTAGTCAAAGGGAATCCTCATCCAAGGTGGGAACTTTCTCCACATGTTTATTTGCTTGTTTTCAGTTTTTCTGATTTAAGAGTCTTCAATTCCGAGTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

450

Amino Acids

49.05

Weight (kDa)

6.58

Isoelectric Point (pI)

67.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WRKY	PF03106	234 - 290	1.3e-25	WRKY DNA -binding domain
WRKY	PF03106	406 - 426	1.3e-06	WRKY DNA -binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010588)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g47800 FvH4_6g47800 FvH4_6g47800
malus_domestica	MD09G1056600.v1.1 MD17G1054100.v1.1
prunus_persica	Prupe.3G262100_v2.0.a1
pyrus_communis	pycom111g04740
rosa_chinensis	RchiOBHm_Chr2g0166991
rosa_laevigata	RLG00000021687
rosa_multiflora	Rmu_sc0010966.1_g000003 Rmu_sc0010966.1_g000004 Rmu_sc0025421.1_g000004
rosa_roxburghii	Rroxscaffold_2G00083830
rosa_rugosa	Rorug02G0527200 Rorug02G0527300 Rorug02G0527300
rosa_samantha	Rh2AG594100 Rh2BG605600 Rh2CG576500 Rh2DG617100
rosa_wichuraiana	Rw2G049470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	711
Acc36I	ACCTGC	2 cut(s)	703, 727
AccII	CGCG	1 cut(s)	760
AclWI	GGATC	1 cut(s)	109
AcoI	YGGCCR	1 cut(s)	47
AcsI	RAATTY	1 cut(s)	334
AcuI	CTGAAG	1 cut(s)	1008
AfiI	CCNNNNNNNGG	1 cut(s)	156
AflIII	ACRYGT	2 cut(s)	466, 1294
AgsI	TTSAA	3 cut(s)	944, 975, 1339
AjnI	CCWGG	3 cut(s)	15, 227, 373
Alw21I	GWGCWC	1 cut(s)	1017
Alw26I	GTCTC	1 cut(s)	139
AlwI	GGATC	1 cut(s)	109
Ama87I	CYCGRG	1 cut(s)	115
AoxI	GGCC	7 cut(s)	47, 71, 84, 230, 326, 456, 645
ApeKI	GCWGC	1 cut(s)	530
ApoI	RAATTY	1 cut(s)	334
AspS9I	GGNCC	3 cut(s)	85, 119, 177
AsuC2I	CCSGG	3 cut(s)	116, 117, 391
AsuHPI	GGTGA	4 cut(s)	308, 355, 1076, 1177
AvaI	CYCGRG	1 cut(s)	115
AvaII	GGWCC	2 cut(s)	119, 177
BanII	GRGCYC	2 cut(s)	386, 434
BbsI	GAAGAC	3 cut(s)	975, 1062, 1327
Bbv12I	GWGCWC	1 cut(s)	1017
BbvCI	CCTCAGC	1 cut(s)	42
BbvI	GCAGC	1 cut(s)	542
BccI	CCATC	4 cut(s)	334, 893, 1121, 1214
BceAI	ACGGC	1 cut(s)	977
BciT130I	CCWGG	3 cut(s)	17, 229, 375
BcnI	CCSGG	3 cut(s)	116, 117, 391
BcoDI	GTCTC	1 cut(s)	139
BfaI	CTAG	2 cut(s)	131, 479
BfmI	CTRYAG	1 cut(s)	696
BfuAI	ACCTGC	2 cut(s)	703, 727
BglI	GCCNNNNNGGC	1 cut(s)	220
BisI	GCNGC	4 cut(s)	6, 47, 97, 531
BlpI	GCTNAGC	1 cut(s)	9
BlsI	GCNGC	4 cut(s)	7, 48, 98, 532
Bme1390I	CCNGG	6 cut(s)	17, 116, 117, 229, 375, 391
Bme18I	GGWCC	2 cut(s)	119, 177
BmeT110I	CYCGRG	1 cut(s)	115
BmgT120I	GGNCC	3 cut(s)	85, 119, 177
BmiI	GGNNCC	2 cut(s)	109, 120
BmrFI	CCNGG	6 cut(s)	17, 116, 117, 229, 375, 391
BmrI	ACTGGG	1 cut(s)	254
BmsI	GCATC	3 cut(s)	489, 1057, 1145
BmuI	ACTGGG	1 cut(s)	254
BoxI	GACNNNNGTC	1 cut(s)	131
BpiI	GAAGAC	3 cut(s)	975, 1062, 1327
BpmI	CTGGAG	2 cut(s)	126, 219
Bpu10I	CCTNAGC	2 cut(s)	42, 936
Bpu1102I	GCTNAGC	1 cut(s)	9
BpuEI	CTTGAG	1 cut(s)	121
BpuMI	CCSGG	3 cut(s)	116, 117, 391
BsaJI	CCNNGG	5 cut(s)	68, 115, 374, 459, 1274
BsaXI	ACNNNNNCTCC	2 cut(s)	161, 191
Bsc4I	CCNNNNNNNGG	1 cut(s)	156
Bse118I	RCCGGY	1 cut(s)	49
Bse1I	ACTGG	2 cut(s)	260, 719
BseBI	CCWGG	3 cut(s)	17, 229, 375
BseDI	CCNNGG	5 cut(s)	68, 115, 374, 459, 1274
BseGI	GGATG	4 cut(s)	652, 674, 1096, 1270
BseLI	CCNNNNNNNGG	1 cut(s)	156
BseMII	CTCAG	8 cut(s)	56, 168, 200, 531, 828, 944, 990, 1131
BseNI	ACTGG	2 cut(s)	260, 719
BseX3I	CGGCCG	1 cut(s)	47
BseXI	GCAGC	1 cut(s)	542
BsgI	GTGCAG	2 cut(s)	459, 1055
Bsh1236I	CGCG	1 cut(s)	760
Bsh1285I	CGRYCG	1 cut(s)	50
BshFI	GGCC	7 cut(s)	49, 73, 86, 232, 328, 458, 647
BsiEI	CGRYCG	1 cut(s)	50
BsiHKAI	GWGCWC	1 cut(s)	1017
BsiHKCI	CYCGRG	1 cut(s)	115
BsiSI	CCGG	3 cut(s)	50, 116, 390
BslFI	GGGAC	1 cut(s)	353
BslI	CCNNNNNNNGG	1 cut(s)	156
BsmAI	GTCTC	1 cut(s)	139
BsmFI	GGGAC	1 cut(s)	353
BsnI	GGCC	7 cut(s)	49, 73, 86, 232, 328, 458, 647
BsoBI	CYCGRG	1 cut(s)	115
Bsp1286I	GDGCHC	3 cut(s)	386, 434, 1017
Bsp143I	GATC	3 cut(s)	101, 703, 1207
Bsp1720I	GCTNAGC	1 cut(s)	9
BspANI	GGCC	7 cut(s)	49, 73, 86, 232, 328, 458, 647
BspCNI	CTCAG	8 cut(s)	55, 167, 199, 532, 829, 943, 991, 1132
BspFNI	CGCG	1 cut(s)	760
BspLI	GGNNCC	2 cut(s)	109, 120
BspMAI	CTGCAG	1 cut(s)	700
BspMI	ACCTGC	2 cut(s)	703, 727
BspPI	GGATC	1 cut(s)	109
BsrFI	RCCGGY	1 cut(s)	49
BsrI	ACTGG	2 cut(s)	260, 719
BssAI	RCCGGY	1 cut(s)	49
BssECI	CCNNGG	5 cut(s)	68, 115, 374, 459, 1274
BssMI	GATC	3 cut(s)	101, 703, 1207
BssT1I	CCWWGG	2 cut(s)	459, 1274
Bst2UI	CCWGG	3 cut(s)	17, 229, 375
Bst4CI	ACNGT	4 cut(s)	367, 791, 1052, 1165
Bst6I	CTCTTC	1 cut(s)	296
BstC8I	GCNNGC	5 cut(s)	112, 225, 408, 456, 504
BstF5I	GGATG	4 cut(s)	652, 674, 1096, 1270
BstFNI	CGCG	1 cut(s)	760
BstKTI	GATC	3 cut(s)	104, 706, 1210
BstMAI	GTCTC	1 cut(s)	139
BstMBI	GATC	3 cut(s)	101, 703, 1207
BstMCI	CGRYCG	1 cut(s)	50
BstMWI	GCNNNNNNNGC	5 cut(s)	43, 220, 229, 325, 403
BstNI	CCWGG	3 cut(s)	17, 229, 375
BstNSI	RCATGY	2 cut(s)	470, 1298
BstPAI	GACNNNNGTC	1 cut(s)	131
BstSCI	CCNGG	6 cut(s)	15, 114, 115, 227, 373, 389
BstSFI	CTRYAG	1 cut(s)	696
BstUI	CGCG	1 cut(s)	760
BstV1I	GCAGC	1 cut(s)	542
BstV2I	GAAGAC	3 cut(s)	975, 1062, 1327
BstX2I	RGATCY	1 cut(s)	101
BstYI	RGATCY	1 cut(s)	101
BstZI	CGGCCG	1 cut(s)	47
BsuRI	GGCC	7 cut(s)	49, 73, 86, 232, 328, 458, 647
BtsCI	GGATG	4 cut(s)	652, 674, 1096, 1270
BtsI	GCAGTG	2 cut(s)	471, 754
BtsIMutI	CAGTG	5 cut(s)	471, 537, 684, 754, 1057
BveI	ACCTGC	2 cut(s)	703, 727
Cac8I	GCNNGC	5 cut(s)	112, 225, 408, 456, 504
Cfr10I	RCCGGY	1 cut(s)	49
Cfr13I	GGNCC	3 cut(s)	85, 119, 177
Cfr9I	CCCGGG	1 cut(s)	115
CspCI	CAANNNNNGTGG	2 cut(s)	360, 395
CviAII	CATG	5 cut(s)	238, 467, 680, 866, 1295
DpnI	GATC	3 cut(s)	103, 705, 1209
DpnII	GATC	3 cut(s)	101, 703, 1207
EaeI	YGGCCR	1 cut(s)	47
EagI	CGGCCG	1 cut(s)	47
Eam1104I	CTCTTC	1 cut(s)	296
EarI	CTCTTC	1 cut(s)	296
EciI	GGCGGA	2 cut(s)	95, 114
EclXI	CGGCCG	1 cut(s)	47
Eco130I	CCWWGG	2 cut(s)	459, 1274
Eco147I	AGGCCT	4 cut(s)	73, 328, 458, 647
Eco24I	GRGCYC	2 cut(s)	386, 434
Eco47I	GGWCC	2 cut(s)	119, 177
Eco52I	CGGCCG	1 cut(s)	47
Eco57I	CTGAAG	1 cut(s)	1008
Eco88I	CYCGRG	1 cut(s)	115
EcoO109I	RGGNCCY	2 cut(s)	85, 177
EcoRII	CCWGG	3 cut(s)	15, 227, 373
EcoT14I	CCWWGG	2 cut(s)	459, 1274
EcoT38I	GRGCYC	2 cut(s)	386, 434
ErhI	CCWWGG	2 cut(s)	459, 1274
FaeI	CATG	5 cut(s)	241, 470, 683, 869, 1298
FalI	AAGNNNNNCTT	2 cut(s)	1194, 1226
FaqI	GGGAC	1 cut(s)	353
FatI	CATG	5 cut(s)	237, 466, 679, 865, 1294
FauI	CCCGC	1 cut(s)	403
FauNDI	CATATG	1 cut(s)	921
Fnu4HI	GCNGC	4 cut(s)	6, 47, 97, 531
FokI	GGATG	4 cut(s)	639, 661, 1103, 1257
FriOI	GRGCYC	2 cut(s)	386, 434
Fsp4HI	GCNGC	4 cut(s)	6, 47, 97, 531
FspBI	CTAG	2 cut(s)	131, 479
GluI	GCNGC	4 cut(s)	6, 47, 97, 531
GsuI	CTGGAG	2 cut(s)	126, 219
HaeIII	GGCC	7 cut(s)	49, 73, 86, 232, 328, 458, 647
HapII	CCGG	3 cut(s)	50, 116, 390
Hin1II	CATG	5 cut(s)	241, 470, 683, 869, 1298
HindIII	AAGCTT	3 cut(s)	139, 579, 938
HinfI	GANTC	9 cut(s)	20, 152, 164, 346, 542, 926, 971, 1264, 1332
HpaII	CCGG	3 cut(s)	50, 116, 390
HphI	GGTGA	4 cut(s)	308, 355, 1076, 1177
Hpy166II	GTNNAC	2 cut(s)	363, 953
Hpy188III	TCNNGA	3 cut(s)	105, 656, 1214
Hpy8I	GTNNAC	2 cut(s)	363, 953
HpyAV	CCTTC	7 cut(s)	84, 190, 266, 681, 954, 1079, 1110
HpyCH4III	ACNGT	4 cut(s)	367, 791, 1052, 1165
HpyCH4IV	ACGT	1 cut(s)	889
HpyF10VI	GCNNNNNNNGC	5 cut(s)	43, 220, 229, 325, 403
HpySE526I	ACGT	1 cut(s)	889
Hsp92II	CATG	5 cut(s)	241, 470, 683, 869, 1298
Kzo9I	GATC	3 cut(s)	101, 703, 1207
LmnI	GCTCC	4 cut(s)	107, 200, 538, 1033
Lsp1109I	GCAGC	1 cut(s)	542
LweI	GCATC	3 cut(s)	489, 1057, 1145
MaeI	CTAG	2 cut(s)	131, 479
MaeII	ACGT	1 cut(s)	889
MaeIII	GTNAC	6 cut(s)	343, 469, 1038, 1046, 1165, 1223
MalI	GATC	3 cut(s)	103, 705, 1209
MboI	GATC	3 cut(s)	101, 703, 1207
MboII	GAAGA	8 cut(s)	136, 313, 510, 975, 1067, 1094, 1202, 1327
MflI	RGATCY	1 cut(s)	101
MhlI	GDGCHC	3 cut(s)	386, 434, 1017
MluCI	AATT	3 cut(s)	24, 334, 1339
MlyI	GAGTC	6 cut(s)	14, 146, 158, 340, 551, 1341
MmeI	TCCRAC	2 cut(s)	174, 946
MseI	TTAA	5 cut(s)	315, 399, 741, 1328, 1351
MslI	CAYNNNNRTG	1 cut(s)	864
MspA1I	CMGCKG	1 cut(s)	46
MspI	CCGG	3 cut(s)	50, 116, 390
MspR9I	CCNGG	6 cut(s)	17, 116, 117, 229, 375, 391
MvaI	CCWGG	3 cut(s)	17, 229, 375
MvnI	CGCG	1 cut(s)	760
MwoI	GCNNNNNNNGC	5 cut(s)	43, 220, 229, 325, 403
NciI	CCSGG	3 cut(s)	116, 117, 391
NdeI	CATATG	1 cut(s)	921
NdeII	GATC	3 cut(s)	101, 703, 1207
NlaIII	CATG	5 cut(s)	241, 470, 683, 869, 1298
NlaIV	GGNNCC	2 cut(s)	109, 120
NmuCI	GTSAC	4 cut(s)	343, 469, 1046, 1165
NspI	RCATGY	2 cut(s)	470, 1298
PceI	AGGCCT	4 cut(s)	73, 328, 458, 647
PciI	ACATGT	2 cut(s)	466, 1294
PfeI	GAWTC	3 cut(s)	926, 971, 1264
PkrI	GCNGC	4 cut(s)	7, 48, 98, 532
PleI	GAGTC	6 cut(s)	14, 146, 158, 340, 550, 1340
PpsI	GAGTC	6 cut(s)	14, 146, 158, 340, 550, 1340
PpuMI	RGGWCCY	1 cut(s)	177
PscI	ACATGT	2 cut(s)	466, 1294
PshAI	GACNNNNGTC	1 cut(s)	131
PsiI	TTATAA	1 cut(s)	711
Psp5II	RGGWCCY	1 cut(s)	177
Psp6I	CCWGG	3 cut(s)	15, 227, 373
PspGI	CCWGG	3 cut(s)	15, 227, 373
PspN4I	GGNNCC	2 cut(s)	109, 120
PspPI	GGNCC	3 cut(s)	85, 119, 177
PspPPI	RGGWCCY	1 cut(s)	177
PstI	CTGCAG	1 cut(s)	700
PsuI	RGATCY	1 cut(s)	101
RseI	CAYNNNNRTG	1 cut(s)	864
SaqAI	TTAA	5 cut(s)	315, 399, 741, 1328, 1351
SatI	GCNGC	4 cut(s)	6, 47, 97, 531
Sau3AI	GATC	3 cut(s)	101, 703, 1207
Sau96I	GGNCC	3 cut(s)	85, 119, 177
SchI	GAGTC	6 cut(s)	14, 146, 158, 340, 551, 1341
ScrFI	CCNGG	6 cut(s)	17, 116, 117, 229, 375, 391
SduI	GDGCHC	3 cut(s)	386, 434, 1017
SfaNI	GCATC	3 cut(s)	489, 1057, 1145
SfcI	CTRYAG	1 cut(s)	696
SinI	GGWCC	2 cut(s)	119, 177
SmaI	CCCGGG	1 cut(s)	117
SmiMI	CAYNNNNRTG	1 cut(s)	864
SmlI	CTYRAG	1 cut(s)	136
SmoI	CTYRAG	1 cut(s)	136
Sse9I	AATT	3 cut(s)	24, 334, 1339
SseBI	AGGCCT	4 cut(s)	73, 328, 458, 647
SspMI	CTAG	2 cut(s)	131, 479
StuI	AGGCCT	4 cut(s)	73, 328, 458, 647
StyD4I	CCNGG	6 cut(s)	15, 114, 115, 227, 373, 389
StyI	CCWWGG	2 cut(s)	459, 1274
TaaI	ACNGT	4 cut(s)	367, 791, 1052, 1165
TaiI	ACGT	1 cut(s)	892
TasI	AATT	3 cut(s)	24, 334, 1339
TauI	GCSGC	3 cut(s)	8, 49, 99
TfiI	GAWTC	3 cut(s)	926, 971, 1264
Tru1I	TTAA	5 cut(s)	315, 399, 741, 1328, 1351
Tru9I	TTAA	5 cut(s)	315, 399, 741, 1328, 1351
TscAI	CASTG	5 cut(s)	478, 544, 691, 754, 1057
TseFI	GTSAC	4 cut(s)	343, 469, 1046, 1165
TseI	GCWGC	1 cut(s)	530
Tsp45I	GTSAC	4 cut(s)	343, 469, 1046, 1165
TspDTI	ATGAA	4 cut(s)	347, 591, 663, 1113
TspMI	CCCGGG	1 cut(s)	115
TspRI	CASTG	5 cut(s)	478, 544, 691, 754, 1057
VpaK11BI	GGWCC	2 cut(s)	119, 177
XapI	RAATTY	1 cut(s)	334
XceI	RCATGY	2 cut(s)	470, 1298
XcmI	CCANNNNNNNNNTGG	1 cut(s)	260
XmaI	CCCGGG	1 cut(s)	115
XspI	CTAG	2 cut(s)	131, 479

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.