Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0010588

Physical Location & Seq

Genomic Coordinates Reverse (-)

65713219 .. 65715196

Gene Structure 1978 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0527300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGGTTCTAGATCCCCCGTCCCTGATCTCTGGTGCCGCGGAGAAGCTGCGCTTTCAATTTGAGTACTTGAATAGTAATGTGCCTTTGTGTGAAGACCTGGTGATGGTGAGGAACTTGATAAACAAAATAGCAAACATGGGTGGCCAAGAAATATTGTACCAATTTTGGAACTCATCACTTGAAGCCATGAATCCTCATTCTCATGATACTAGTACTGGAGTTGGATATCAAATTGGAAGTGATGGCTTAAGCTTCATAGAGAATCTGCTCATGTTATCAGACTACTCATCTGCACCAACACGGTTTGTTTTGCTCTACAATCATTGGTGCCAGCTTTGCCTGGCCAAGTATGAATCACATGTTAAATTGGGTGAAAGAGTACCACAGATGGTAGGAACTAGTCAGATCAAGTTGGGCAAACCCATAATGAGGCCAGATGGTGACTTCACATGGCAAAGCAAGAACTGCAGCATAGATTGTCTTCCATATAGAACCACTTCGTGTAATTTCACTCCTACAGATCCATCGAGTACTTCTCTGAGAGGGTCATCACTGGTCTTTTTGATGGGTTTTTATTTGGTGCCATATGATCATGGTCATCAATGTTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

203

Amino Acids

22.78

Weight (kDa)

5.82

Isoelectric Point (pI)

31.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010588)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g47800 FvH4_6g47800 FvH4_6g47800
malus_domestica	MD09G1056600.v1.1 MD17G1054100.v1.1
prunus_persica	Prupe.3G262100_v2.0.a1
pyrus_communis	pycom111g04740
rosa_chinensis	RchiOBHm_Chr2g0166991
rosa_laevigata	RLG00000021687
rosa_multiflora	Rmu_sc0010966.1_g000003 Rmu_sc0010966.1_g000004 Rmu_sc0025421.1_g000004
rosa_roxburghii	Rroxscaffold_2G00083830
rosa_rugosa	Rorug02G0527200 Rorug02G0527300 Rorug02G0527300
rosa_samantha	Rh2AG594100 Rh2BG605600 Rh2CG576500 Rh2DG617100
rosa_wichuraiana	Rw2G049470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	32, 327, 580
AccII	CGCG	1 cut(s)	38
AciI	CCGC	2 cut(s)	36, 38
AclWI	GGATC	2 cut(s)	5, 515
AcoI	YGGCCR	2 cut(s)	142, 342
AdeI	CACNNNGTG	1 cut(s)	501
AfaI	GTAC	5 cut(s)	65, 158, 214, 381, 532
AfiI	CCNNNNNNNGG	2 cut(s)	103, 429
AflII	CTTAAG	1 cut(s)	247
AflIII	ACRYGT	1 cut(s)	358
AgsI	TTSAA	3 cut(s)	56, 70, 182
AhlI	ACTAGT	2 cut(s)	209, 398
AjnI	CCWGG	2 cut(s)	96, 339
AluBI	AGCT	3 cut(s)	46, 252, 334
AluI	AGCT	3 cut(s)	46, 252, 334
AlwI	GGATC	2 cut(s)	5, 515
AoxI	GGCC	3 cut(s)	142, 342, 431
ApeKI	GCWGC	2 cut(s)	46, 468
Asp700I	GAANNNNTTC	1 cut(s)	496
AspLEI	GCGC	1 cut(s)	51
AsuHPI	GGTGA	4 cut(s)	112, 118, 383, 452
BalI	TGGCCA	2 cut(s)	144, 344
BanI	GGYRCC	3 cut(s)	32, 327, 580
BbsI	GAAGAC	2 cut(s)	99, 473
BbvI	GCAGC	2 cut(s)	33, 480
BccI	CCATC	6 cut(s)	97, 236, 382, 431, 532, 559
BciT130I	CCWGG	2 cut(s)	98, 341
BclI	TGATCA	1 cut(s)	589
BcuI	ACTAGT	2 cut(s)	209, 398
BfaI	CTAG	3 cut(s)	8, 210, 399
BfmI	CTRYAG	2 cut(s)	466, 516
BfrI	CTTAAG	1 cut(s)	247
BisI	GCNGC	3 cut(s)	36, 47, 469
BlsI	GCNGC	3 cut(s)	37, 48, 470
BmcAI	AGTACT	3 cut(s)	65, 214, 532
Bme1390I	CCNGG	2 cut(s)	98, 341
BmiI	GGNNCC	3 cut(s)	34, 329, 582
BmrFI	CCNGG	2 cut(s)	98, 341
BpiI	GAAGAC	2 cut(s)	99, 473
BplI	GAGNNNNNCTC	2 cut(s)	520, 552
BpmI	CTGGAG	1 cut(s)	237
BsaJI	CCNNGG	1 cut(s)	36
Bsc4I	CCNNNNNNNGG	2 cut(s)	103, 429
Bse1I	ACTGG	2 cut(s)	220, 558
BseBI	CCWGG	2 cut(s)	98, 341
BseDI	CCNNGG	1 cut(s)	36
BseLI	CCNNNNNNNGG	2 cut(s)	103, 429
BseMII	CTCAG	1 cut(s)	530
BseNI	ACTGG	2 cut(s)	220, 558
BseXI	GCAGC	2 cut(s)	33, 480
BsgI	GTGCAG	1 cut(s)	276
Bsh1236I	CGCG	1 cut(s)	38
BshFI	GGCC	3 cut(s)	144, 344, 433
BshNI	GGYRCC	3 cut(s)	32, 327, 580
BslFI	GGGAC	1 cut(s)	4
BslI	CCNNNNNNNGG	2 cut(s)	103, 429
BsmFI	GGGAC	1 cut(s)	4
BsnI	GGCC	3 cut(s)	144, 344, 433
Bsp143I	GATC	5 cut(s)	10, 24, 405, 520, 589
BspACI	CCGC	2 cut(s)	36, 38
BspANI	GGCC	3 cut(s)	144, 344, 433
BspCNI	CTCAG	1 cut(s)	531
BspFNI	CGCG	1 cut(s)	38
BspHI	TCATGA	1 cut(s)	202
BspLI	GGNNCC	3 cut(s)	34, 329, 582
BspMAI	CTGCAG	1 cut(s)	470
BspPI	GGATC	2 cut(s)	5, 515
BspT107I	GGYRCC	3 cut(s)	32, 327, 580
BspTI	CTTAAG	1 cut(s)	247
BsrI	ACTGG	2 cut(s)	220, 558
BssECI	CCNNGG	1 cut(s)	36
BssMI	GATC	5 cut(s)	10, 24, 405, 520, 589
Bst2UI	CCWGG	2 cut(s)	98, 341
Bst4CI	ACNGT	1 cut(s)	303
BstAFI	CTTAAG	1 cut(s)	247
BstAPI	GCANNNNNTGC	1 cut(s)	465
BstC8I	GCNNGC	1 cut(s)	332
BstDEI	CTNAG	2 cut(s)	539, 609
BstDSI	CCRYGG	1 cut(s)	36
BstFNI	CGCG	1 cut(s)	38
BstHHI	GCGC	1 cut(s)	51
BstKTI	GATC	5 cut(s)	13, 27, 408, 523, 592
BstMBI	GATC	5 cut(s)	10, 24, 405, 520, 589
BstMWI	GCNNNNNNNGC	2 cut(s)	336, 465
BstNI	CCWGG	2 cut(s)	98, 341
BstNSI	RCATGY	1 cut(s)	362
BstSCI	CCNGG	2 cut(s)	96, 339
BstSFI	CTRYAG	2 cut(s)	466, 516
BstUI	CGCG	1 cut(s)	38
BstV1I	GCAGC	2 cut(s)	33, 480
BstV2I	GAAGAC	2 cut(s)	99, 473
BstX2I	RGATCY	2 cut(s)	10, 520
BstYI	RGATCY	2 cut(s)	10, 520
BsuRI	GGCC	3 cut(s)	144, 344, 433
BtgI	CCRYGG	1 cut(s)	36
BtsIMutI	CAGTG	1 cut(s)	551
Cac8I	GCNNGC	1 cut(s)	332
CciI	TCATGA	1 cut(s)	202
CfoI	GCGC	1 cut(s)	51
Cfr42I	CCGCGG	1 cut(s)	39
CsiI	ACCWGGT	1 cut(s)	96
Csp6I	GTAC	5 cut(s)	64, 157, 213, 380, 531
CviAII	CATG	7 cut(s)	136, 187, 203, 271, 359, 450, 593
CviJI	RGCY	8 cut(s)	46, 144, 185, 246, 252, 334, 344, 433
CviKI_1	RGCY	8 cut(s)	46, 144, 185, 246, 252, 334, 344, 433
CviQI	GTAC	5 cut(s)	64, 157, 213, 380, 531
DdeI	CTNAG	2 cut(s)	539, 609
DpnI	GATC	5 cut(s)	12, 26, 407, 522, 591
DpnII	GATC	5 cut(s)	10, 24, 405, 520, 589
DraIII	CACNNNGTG	1 cut(s)	501
EaeI	YGGCCR	2 cut(s)	142, 342
Eco32I	GATATC	1 cut(s)	227
EcoRII	CCWGG	2 cut(s)	96, 339
EcoRV	GATATC	1 cut(s)	227
FaeI	CATG	7 cut(s)	139, 190, 206, 274, 362, 453, 596
FalI	AAGNNNNNCTT	2 cut(s)	35, 67
FaqI	GGGAC	1 cut(s)	4
FatI	CATG	7 cut(s)	135, 186, 202, 270, 358, 449, 592
FauNDI	CATATG	1 cut(s)	586
FbaI	TGATCA	1 cut(s)	589
Fnu4HI	GCNGC	3 cut(s)	36, 47, 469
Fsp4HI	GCNGC	3 cut(s)	36, 47, 469
FspBI	CTAG	3 cut(s)	8, 210, 399
GlaI	GCGC	1 cut(s)	50
GluI	GCNGC	3 cut(s)	36, 47, 469
GsuI	CTGGAG	1 cut(s)	237
HaeIII	GGCC	3 cut(s)	144, 344, 433
HhaI	GCGC	1 cut(s)	51
Hin1II	CATG	7 cut(s)	139, 190, 206, 274, 362, 453, 596
Hin6I	GCGC	1 cut(s)	49
HinP1I	GCGC	1 cut(s)	49
HindIII	AAGCTT	1 cut(s)	250
HinfI	GANTC	3 cut(s)	190, 262, 353
HphI	GGTGA	4 cut(s)	112, 118, 383, 452
Hpy188I	TCNGA	3 cut(s)	280, 405, 540
Hpy188III	TCNNGA	2 cut(s)	8, 203
HpyCH4III	ACNGT	1 cut(s)	303
HpyCH4V	TGCA	2 cut(s)	293, 468
HpyF10VI	GCNNNNNNNGC	2 cut(s)	336, 465
HpyF3I	CTNAG	2 cut(s)	539, 609
Hsp92II	CATG	7 cut(s)	139, 190, 206, 274, 362, 453, 596
HspAI	GCGC	1 cut(s)	49
Ksp22I	TGATCA	1 cut(s)	589
KspI	CCGCGG	1 cut(s)	39
Kzo9I	GATC	5 cut(s)	10, 24, 405, 520, 589
Lsp1109I	GCAGC	2 cut(s)	33, 480
MabI	ACCWGGT	1 cut(s)	96
MaeI	CTAG	3 cut(s)	8, 210, 399
MaeIII	GTNAC	1 cut(s)	440
MalI	GATC	5 cut(s)	12, 26, 407, 522, 591
MboI	GATC	5 cut(s)	10, 24, 405, 520, 589
MboII	GAAGA	2 cut(s)	104, 473
MflI	RGATCY	2 cut(s)	10, 520
MlsI	TGGCCA	2 cut(s)	144, 344
MluCI	AATT	5 cut(s)	56, 161, 231, 365, 505
MluNI	TGGCCA	2 cut(s)	144, 344
MmeI	TCCRAC	1 cut(s)	202
MnlI	CCTC	4 cut(s)	102, 204, 423, 536
Mox20I	TGGCCA	2 cut(s)	144, 344
MroXI	GAANNNNTTC	1 cut(s)	496
MscI	TGGCCA	2 cut(s)	144, 344
MseI	TTAA	2 cut(s)	248, 363
MslI	CAYNNNNRTG	1 cut(s)	201
Msp20I	TGGCCA	2 cut(s)	144, 344
MspA1I	CMGCKG	1 cut(s)	38
MspCI	CTTAAG	1 cut(s)	247
MspR9I	CCNGG	2 cut(s)	98, 341
MvaI	CCWGG	2 cut(s)	98, 341
MvnI	CGCG	1 cut(s)	38
MwoI	GCNNNNNNNGC	2 cut(s)	336, 465
NdeI	CATATG	1 cut(s)	586
NdeII	GATC	5 cut(s)	10, 24, 405, 520, 589
NlaIII	CATG	7 cut(s)	139, 190, 206, 274, 362, 453, 596
NlaIV	GGNNCC	3 cut(s)	34, 329, 582
NmuCI	GTSAC	1 cut(s)	440
NspI	RCATGY	1 cut(s)	362
PagI	TCATGA	1 cut(s)	202
PciI	ACATGT	1 cut(s)	358
PdmI	GAANNNNTTC	1 cut(s)	496
PfeI	GAWTC	3 cut(s)	190, 262, 353
PkrI	GCNGC	3 cut(s)	37, 48, 470
PscI	ACATGT	1 cut(s)	358
Psp6I	CCWGG	2 cut(s)	96, 339
PspGI	CCWGG	2 cut(s)	96, 339
PspN4I	GGNNCC	3 cut(s)	34, 329, 582
PstI	CTGCAG	1 cut(s)	470
PsuI	RGATCY	2 cut(s)	10, 520
RsaI	GTAC	5 cut(s)	65, 158, 214, 381, 532
RsaNI	GTAC	5 cut(s)	64, 157, 213, 380, 531
RseI	CAYNNNNRTG	1 cut(s)	201
SacII	CCGCGG	1 cut(s)	39
SaqAI	TTAA	2 cut(s)	248, 363
SatI	GCNGC	3 cut(s)	36, 47, 469
Sau3AI	GATC	5 cut(s)	10, 24, 405, 520, 589
ScaI	AGTACT	3 cut(s)	65, 214, 532
ScrFI	CCNGG	2 cut(s)	98, 341
SetI	ASST	4 cut(s)	48, 99, 254, 336
SexAI	ACCWGGT	1 cut(s)	96
SfcI	CTRYAG	2 cut(s)	466, 516
Sfr303I	CCGCGG	1 cut(s)	39
SgrBI	CCGCGG	1 cut(s)	39
SmiMI	CAYNNNNRTG	1 cut(s)	201
SmlI	CTYRAG	1 cut(s)	247
SmoI	CTYRAG	1 cut(s)	247
SpeI	ACTAGT	2 cut(s)	209, 398
Sse9I	AATT	5 cut(s)	56, 161, 231, 365, 505
SsiI	CCGC	2 cut(s)	36, 38
SspI	AATATT	1 cut(s)	153
SspMI	CTAG	3 cut(s)	8, 210, 399
StyD4I	CCNGG	2 cut(s)	96, 339
TaaI	ACNGT	1 cut(s)	303
TaqI	TCGA	1 cut(s)	527
TasI	AATT	5 cut(s)	56, 161, 231, 365, 505
TatI	WGTACW	3 cut(s)	63, 212, 530
TauI	GCSGC	1 cut(s)	38
TfiI	GAWTC	3 cut(s)	190, 262, 353
Tru1I	TTAA	2 cut(s)	248, 363
Tru9I	TTAA	2 cut(s)	248, 363
TscAI	CASTG	1 cut(s)	558
TseFI	GTSAC	1 cut(s)	440
TseI	GCWGC	2 cut(s)	46, 468
Tsp45I	GTSAC	1 cut(s)	440
TspDTI	ATGAA	3 cut(s)	203, 244, 366
TspRI	CASTG	1 cut(s)	558
Vha464I	CTTAAG	1 cut(s)	247
XbaI	TCTAGA	1 cut(s)	7
XceI	RCATGY	1 cut(s)	362
XmnI	GAANNNNTTC	1 cut(s)	496
XspI	CTAG	3 cut(s)	8, 210, 399
ZrmI	AGTACT	3 cut(s)	65, 214, 532

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.