Vacuolar protein sorting-associated protein 62
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G04350 AT3G04350 |
| fragaria_vesca | FvH4_6g01580 |
| malus_domestica | MD00G1149300.v1.1 MD04G1232300.v1.1 MD07G1000700.v1.1 |
| prunus_persica | Prupe.2G000800_v2.0.a1 Prupe.6G351900_v2.0.a1 |
| pyrus_communis | pycom04g20570 pycom12g23000 |
| rosa_chinensis | RchiOBHm_Chr3g0449321 |
| rosa_laevigata | RLG00000025839 |
| rosa_multiflora | Rmu_sc0017357.1_g000003 |
| rosa_roxburghii | Rroxscaffold_6G00427330 |
| rosa_rugosa | Rorug02G0619700 |
| rosa_samantha | Rh3AG017700 Rh3BG017800 Rh3CG016800 |
| rosa_wichuraiana | Rw3G001360 Rw3G001390 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 10 |
| AccB1I | GGYRCC | 1 cut(s) | 10 |
| AfaI | GTAC | 2 cut(s) | 12, 302 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 117, 398 |
| AgsI | TTSAA | 3 cut(s) | 128, 164, 397 |
| AluBI | AGCT | 2 cut(s) | 274, 286 |
| AluI | AGCT | 2 cut(s) | 274, 286 |
| Alw21I | GWGCWC | 1 cut(s) | 276 |
| Alw26I | GTCTC | 1 cut(s) | 65 |
| AoxI | GGCC | 4 cut(s) | 48, 60, 108, 196 |
| ApeKI | GCWGC | 1 cut(s) | 26 |
| Asp718I | GGTACC | 1 cut(s) | 10 |
| AsuHPI | GGTGA | 1 cut(s) | 89 |
| BanI | GGYRCC | 1 cut(s) | 10 |
| BanII | GRGCYC | 1 cut(s) | 276 |
| Bbv12I | GWGCWC | 1 cut(s) | 276 |
| BbvCI | CCTCAGC | 1 cut(s) | 207 |
| BbvI | GCAGC | 1 cut(s) | 13 |
| BccI | CCATC | 1 cut(s) | 283 |
| BcoDI | GTCTC | 1 cut(s) | 65 |
| BisI | GCNGC | 1 cut(s) | 27 |
| BlsI | GCNGC | 1 cut(s) | 28 |
| BmiI | GGNNCC | 2 cut(s) | 12, 390 |
| BmsI | GCATC | 3 cut(s) | 13, 243, 392 |
| BpmI | CTGGAG | 1 cut(s) | 278 |
| Bpu10I | CCTNAGC | 2 cut(s) | 30, 207 |
| BsaJI | CCNNGG | 1 cut(s) | 51 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 284, 314 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 117, 398 |
| Bse1I | ACTGG | 1 cut(s) | 79 |
| Bse3DI | GCAATG | 2 cut(s) | 91, 367 |
| BseDI | CCNNGG | 1 cut(s) | 51 |
| BseGI | GGATG | 1 cut(s) | 407 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 117, 398 |
| BseMI | GCAATG | 2 cut(s) | 91, 367 |
| BseMII | CTCAG | 1 cut(s) | 198 |
| BseNI | ACTGG | 1 cut(s) | 79 |
| BseRI | GAGGAG | 2 cut(s) | 234, 401 |
| BseXI | GCAGC | 1 cut(s) | 13 |
| BshFI | GGCC | 4 cut(s) | 50, 62, 110, 198 |
| BshNI | GGYRCC | 1 cut(s) | 10 |
| BsiHKAI | GWGCWC | 1 cut(s) | 276 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 117, 398 |
| BsmAI | GTCTC | 1 cut(s) | 65 |
| BsnI | GGCC | 4 cut(s) | 50, 62, 110, 198 |
| Bsp1286I | GDGCHC | 1 cut(s) | 276 |
| Bsp1407I | TGTACA | 1 cut(s) | 300 |
| BspANI | GGCC | 4 cut(s) | 50, 62, 110, 198 |
| BspCNI | CTCAG | 1 cut(s) | 199 |
| BspLI | GGNNCC | 2 cut(s) | 12, 390 |
| BspQI | GCTCTTC | 1 cut(s) | 338 |
| BspT107I | GGYRCC | 1 cut(s) | 10 |
| BsrDI | GCAATG | 2 cut(s) | 91, 367 |
| BsrGI | TGTACA | 1 cut(s) | 300 |
| BsrI | ACTGG | 1 cut(s) | 79 |
| BssECI | CCNNGG | 1 cut(s) | 51 |
| Bst6I | CTCTTC | 1 cut(s) | 338 |
| BstAUI | TGTACA | 1 cut(s) | 300 |
| BstDEI | CTNAG | 3 cut(s) | 30, 207, 354 |
| BstF5I | GGATG | 1 cut(s) | 407 |
| BstMAI | GTCTC | 1 cut(s) | 65 |
| BstNSI | RCATGY | 1 cut(s) | 409 |
| BstV1I | GCAGC | 1 cut(s) | 13 |
| BsuRI | GGCC | 4 cut(s) | 50, 62, 110, 198 |
| BtsCI | GGATG | 1 cut(s) | 407 |
| Csp6I | GTAC | 2 cut(s) | 11, 301 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 168, 203 |
| CviAII | CATG | 3 cut(s) | 104, 340, 406 |
| CviJI | RGCY | 9 cut(s) | 50, 62, 102, 110, 131, 198, 274, 286, 391 |
| CviKI_1 | RGCY | 9 cut(s) | 50, 62, 102, 110, 131, 198, 274, 286, 391 |
| CviQI | GTAC | 2 cut(s) | 11, 301 |
| DdeI | CTNAG | 3 cut(s) | 30, 207, 354 |
| Eam1104I | CTCTTC | 1 cut(s) | 338 |
| EarI | CTCTTC | 1 cut(s) | 338 |
| Ecl136II | GAGCTC | 1 cut(s) | 274 |
| Eco147I | AGGCCT | 1 cut(s) | 198 |
| Eco24I | GRGCYC | 1 cut(s) | 276 |
| Eco53kI | GAGCTC | 1 cut(s) | 274 |
| EcoICRI | GAGCTC | 1 cut(s) | 274 |
| EcoT22I | ATGCAT | 1 cut(s) | 407 |
| EcoT38I | GRGCYC | 1 cut(s) | 276 |
| FaeI | CATG | 3 cut(s) | 107, 343, 409 |
| FaiI | YATR | 5 cut(s) | 105, 266, 327, 341, 407 |
| FatI | CATG | 3 cut(s) | 103, 339, 405 |
| Fnu4HI | GCNGC | 1 cut(s) | 27 |
| FokI | GGATG | 1 cut(s) | 414 |
| FriOI | GRGCYC | 1 cut(s) | 276 |
| Fsp4HI | GCNGC | 1 cut(s) | 27 |
| GluI | GCNGC | 1 cut(s) | 27 |
| GsuI | CTGGAG | 1 cut(s) | 278 |
| HaeIII | GGCC | 4 cut(s) | 50, 62, 110, 198 |
| Hin1II | CATG | 3 cut(s) | 107, 343, 409 |
| HinfI | GANTC | 3 cut(s) | 173, 224, 236 |
| HphI | GGTGA | 1 cut(s) | 89 |
| Hpy188I | TCNGA | 1 cut(s) | 241 |
| HpyAV | CCTTC | 4 cut(s) | 40, 74, 262, 391 |
| HpyCH4V | TGCA | 2 cut(s) | 179, 405 |
| HpyF3I | CTNAG | 3 cut(s) | 30, 207, 354 |
| Hsp92II | CATG | 3 cut(s) | 107, 343, 409 |
| KpnI | GGTACC | 1 cut(s) | 14 |
| LguI | GCTCTTC | 1 cut(s) | 338 |
| LmnI | GCTCC | 2 cut(s) | 271, 388 |
| LpnPI | CCDG | 5 cut(s) | 60, 120, 138, 180, 242 |
| Lsp1109I | GCAGC | 1 cut(s) | 13 |
| LweI | GCATC | 3 cut(s) | 13, 243, 392 |
| MaeIII | GTNAC | 1 cut(s) | 414 |
| MboII | GAAGA | 3 cut(s) | 55, 169, 355 |
| MhlI | GDGCHC | 1 cut(s) | 276 |
| MluCI | AATT | 1 cut(s) | 37 |
| MlyI | GAGTC | 3 cut(s) | 182, 230, 233 |
| MnlI | CCTC | 7 cut(s) | 46, 52, 100, 142, 202, 212, 379 |
| Mph1103I | ATGCAT | 1 cut(s) | 407 |
| NlaIII | CATG | 3 cut(s) | 107, 343, 409 |
| NlaIV | GGNNCC | 2 cut(s) | 12, 390 |
| NmeAIII | GCCGAG | 1 cut(s) | 76 |
| NsiI | ATGCAT | 1 cut(s) | 407 |
| NspI | RCATGY | 1 cut(s) | 409 |
| PceI | AGGCCT | 1 cut(s) | 198 |
| PciSI | GCTCTTC | 1 cut(s) | 338 |
| PkrI | GCNGC | 1 cut(s) | 28 |
| PleI | GAGTC | 3 cut(s) | 181, 230, 232 |
| PpsI | GAGTC | 3 cut(s) | 181, 230, 232 |
| Psp124BI | GAGCTC | 1 cut(s) | 276 |
| PspN4I | GGNNCC | 2 cut(s) | 12, 390 |
| RsaI | GTAC | 2 cut(s) | 12, 302 |
| RsaNI | GTAC | 2 cut(s) | 11, 301 |
| SacI | GAGCTC | 1 cut(s) | 276 |
| SapI | GCTCTTC | 1 cut(s) | 338 |
| SatI | GCNGC | 1 cut(s) | 27 |
| SchI | GAGTC | 3 cut(s) | 182, 230, 233 |
| SduI | GDGCHC | 1 cut(s) | 276 |
| SetI | ASST | 8 cut(s) | 12, 16, 57, 169, 185, 213, 276, 288 |
| SfaNI | GCATC | 3 cut(s) | 13, 243, 392 |
| Sse9I | AATT | 1 cut(s) | 37 |
| SseBI | AGGCCT | 1 cut(s) | 198 |
| SstI | GAGCTC | 1 cut(s) | 276 |
| StuI | AGGCCT | 1 cut(s) | 198 |
| TasI | AATT | 1 cut(s) | 37 |
| TatI | WGTACW | 1 cut(s) | 300 |
| TseI | GCWGC | 1 cut(s) | 26 |
| TspDTI | ATGAA | 2 cut(s) | 281, 356 |
| TspGWI | ACGGA | 1 cut(s) | 248 |
| XceI | RCATGY | 1 cut(s) | 409 |
| Zsp2I | ATGCAT | 1 cut(s) | 407 |