Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0005116

Physical Location & Seq

Genomic Coordinates Reverse (-)

17297075 .. 17298523

Gene Structure 1449 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0197000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1449 bp

ATGATGAGGAGGTTCCGAAAACCAAAGCTGATACCTTTACTGGAGCAAAAGCCTCCAACACTCCCACAGCTGTCTCCGATCCCAAACCCATCTCTCCCAAAACCCCCACAACACCCATCACCACCACCTTCCCCAATCCTCACTCTCTCCCACACCTCAAACCACACCCACACCCACCTCCTCACCTTCATCAAAACCCACATCAAAAACCCACCTCTCTCCCCCAAAACCCTCCTCCATTTCCTCAAGTCCAAGCTCCACCACCACCCCACCTTCACCCATTTCGACTTCCACGTCTTCAACTGGGCCTCCTCCGTCGACTCCTTCCGCCACGACCACTCCACTTTCGAATGGATGGTCTGCACTCTCGCAACCACCGACCGCTTCGCCGAGCTGGGCCATCTCATCGGTTTCATGGTTTCGAACCCATGCCCTTGTTCCGATGGTATTTTCTCTTGCCCCAGAACAGAACCCATTTTCAAATTTGCGATTAGTGCTTATTGTAGAGTAGGGAGGTTGGGTGATGCTGTTGGTGCTTTTGATTCCATGAGGAAATTGATTGATGGGAAGCCTAGTGTTGTGGTTTATAACATTGTGATTAATGGGTTTGTGAAATGTGGGGCACATGATAAGGCTTTGGGGTTTTATGAGAAGATGGTTAGGGATAGAGTTAAGGCTGATGTGTTTACTTTTAATATTTTGATTAGTGGTTATTGTCGAAATTCGCAATTCGGGTTGGCTTTGGAGTTGTTTAAGGAGATGAGGGAGAAGGGGTGTAGTCCCAATGTGGTTAGTTTCAATACTTTGATTAAGGGGTTCTTTAGGGAGAGGAAGGTTGAGGATGGGATTGAGATGGCTTATGAGATGATTGAGTTTGGGTGCAAGTTTTCGAGTGTGACTTGTGAGATTTTGGTTGATGGACTTTGTAGAGAAGGTCGGGTTGAGGTGGCGTGTGAGCTGTTGATTGATTTTTCGAGGAAAGGAGTGTTGCCTAGGTTGTATGATTATTATGGTCTTGTTGAAGTGCTTTGTGGGGAAAGAAATTCGGGGAGAGCGTTGGAGGTTGTGGATGAGCTGTGGAGGACAGGAAATGTTCCGAGCTTGATTGCTTGTACCACTTTGGTTGAGGGTTTGAGGAGGTCGGCGAGGATTGATGAGGCTTTAGAAGTGATGGAAAGGATGCTTGAAGAGGGTATGGTTCCAGATTTTGTGACTTTTAATTGCCTCCTTCAAGATCTTTGCAATTTGGGGAGAACTGACGAAGCCGATAACCTTAGGTTGTTGTCTTCGAGTAAAGGCTTGGAGCTAGACGGCATGGCATATACCATTTTGGTGTCTGGGTATTCAAGAGAAGGGAAAAAGAAGGAGGTGAAAGTGGTGGTGGATGAGATGCTGGATATGGGATTTATACCTGATCTTGCTACGTATAATAGGTTGGTTGATGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001558 GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005884 GO:0006996 GO:0007010 GO:0007015 GO:0008064 GO:0008092 GO:0008150 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009987 GO:0010639 GO:0010817 GO:0015629 GO:0016043 GO:0022607 GO:0030029 GO:0030036 GO:0030832 GO:0030833 GO:0030834 GO:0030835 GO:0030837 GO:0031333 GO:0032271 GO:0032272 GO:0032432 GO:0032535 GO:0032879 GO:0032956 GO:0032970 GO:0033043 GO:0040008 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043242 GO:0043244 GO:0043254 GO:0044085 GO:0044087 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0044877 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051014 GO:0051015 GO:0051017 GO:0051049 GO:0051128 GO:0051129 GO:0051493 GO:0051494 GO:0051693 GO:0061572 GO:0065007 GO:0065008 GO:0071840 GO:0090066 GO:0097435 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0110053 GO:1901879 GO:1901880 GO:1902903 GO:1902904 GO:2000012

KEGG Pathways

Metabolic & Signaling

ko04666 ko04810 ko05203 map04666 map04810 map05203

Pfam Domains

Protein Families

Gelsolin VHP

Protein Analysis

482

Amino Acids

54.39

Weight (kDa)

6.96

Isoelectric Point (pI)

35.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	191 - 240	1.7e-16	PPR repeat family
PPR	PF01535	194 - 223	2.3e-06	PPR repeat
PPR_3	PF13812	217 - 271	9.6e-14	Pentatricopeptide repeat domain
PPR_1	PF12854	224 - 255	3.9e-10	PPR repeat
PPR_2	PF13041	227 - 273	1.5e-18	PPR repeat family
PPR	PF01535	229 - 259	3.1e-10	PPR repeat
PPR_1	PF12854	257 - 289	3e-08	PPR repeat
PPR_2	PF13041	261 - 310	4.6e-12	PPR repeat family
PPR_1	PF12854	293 - 321	6.8e-06	PPR repeat
PPR_2	PF13041	366 - 415	7.3e-09	PPR repeat family
PPR_3	PF13812	431 - 479	8.6e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	440 - 482	7.4e-07	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0005116)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41740 AT2G41740 AT3G57410 AT3G57410 AT3G57410 AT3G57410 AT3G57410 AT3G57410 AT3G57410 AT3G57410 AT3G57410 AT3G57410
fragaria_vesca	FvH4_6g23900 FvH4_6g23900 FvH4_6g23900 FvH4_6g23900
malus_domestica	MD12G1074400.v1.1 MD14G1072600.v1.1
prunus_persica	Prupe.7G059400_v2.0.a1
pyrus_communis	pycom12g06410 pycom14g06250
rosa_chinensis	RchiOBHm_Chr3g0482581
rosa_laevigata	RLG00000023341
rosa_roxburghii	Rroxscaffold_6G00399140
rosa_rugosa	Rorug03G0197000 Rorug03G0197100
rosa_samantha	Rh3AG248500 Rh3BG283600 Rh3DG277400
rosa_wichuraiana	Rw3G022440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	588
AasI	GACNNNNNNGTC	1 cut(s)	293
AccI	GTMKAC	1 cut(s)	318
AciI	CCGC	2 cut(s)	328, 382
AclWI	GGATC	1 cut(s)	73
AcsI	RAATTY	3 cut(s)	482, 721, 1042
AfaI	GTAC	1 cut(s)	1114
AgsI	TTSAA	7 cut(s)	301, 481, 799, 1022, 1187, 1232, 1347
AjiI	CACGTC	1 cut(s)	295
AluBI	AGCT	8 cut(s)	28, 70, 256, 394, 958, 1075, 1101, 1306
AluI	AGCT	8 cut(s)	28, 70, 256, 394, 958, 1075, 1101, 1306
Alw26I	GTCTC	1 cut(s)	78
AlwI	GGATC	1 cut(s)	73
AoxI	GGCC	2 cut(s)	306, 397
ApoI	RAATTY	3 cut(s)	482, 721, 1042
ArsI	GACNNNNNNTTYG	2 cut(s)	342, 374
AseI	ATTAAT	1 cut(s)	600
AspA2I	CCTAGG	1 cut(s)	992
AspS9I	GGNCC	2 cut(s)	306, 397
AsuHPI	GGTGA	5 cut(s)	111, 175, 268, 533, 1381
AsuII	TTCGAA	2 cut(s)	348, 422
AvrII	CCTAGG	1 cut(s)	992
AxyI	CCTNAGG	1 cut(s)	1274
BaeGI	GKGCMC	1 cut(s)	625
BbsI	GAAGAC	2 cut(s)	289, 1278
BceAI	ACGGC	1 cut(s)	1327
BcoDI	GTCTC	1 cut(s)	78
BfaI	CTAG	3 cut(s)	573, 993, 1307
BglII	AGATCT	1 cut(s)	1234
BlnI	CCTAGG	1 cut(s)	992
BmgBI	CACGTC	1 cut(s)	295
BmgT120I	GGNCC	2 cut(s)	306, 397
BmiI	GGNNCC	2 cut(s)	14, 1200
BmrI	ACTGGG	1 cut(s)	313
BmsI	GCATC	3 cut(s)	514, 1170, 1380
BmuI	ACTGGG	1 cut(s)	313
BpiI	GAAGAC	2 cut(s)	289, 1278
BpmI	CTGGAG	1 cut(s)	62
Bpu14I	TTCGAA	2 cut(s)	348, 422
BpuEI	CTTGAG	1 cut(s)	230
BsaAI	YACGTR	1 cut(s)	1425
BsaJI	CCNNGG	1 cut(s)	992
BsaXI	ACNNNNNCTCC	8 cut(s)	293, 323, 323, 353, 505, 535, 758, 788
Bse1I	ACTGG	2 cut(s)	45, 308
Bse21I	CCTNAGG	1 cut(s)	1274
BseDI	CCNNGG	1 cut(s)	992
BseGI	GGATG	5 cut(s)	360, 847, 1075, 1185, 1390
BseNI	ACTGG	2 cut(s)	45, 308
BseRI	GAGGAG	5 cut(s)	22, 170, 224, 301, 1150
BseSI	GKGCMC	1 cut(s)	625
BseYI	CCCAGC	1 cut(s)	394
BsgI	GTGCAG	1 cut(s)	346
Bsh1285I	CGRYCG	1 cut(s)	382
BshFI	GGCC	2 cut(s)	308, 399
BsiEI	CGRYCG	1 cut(s)	382
BslFI	GGGAC	1 cut(s)	765
BsmAI	GTCTC	1 cut(s)	78
BsmFI	GGGAC	1 cut(s)	765
BsnI	GGCC	2 cut(s)	308, 399
Bsp119I	TTCGAA	2 cut(s)	348, 422
Bsp1286I	GDGCHC	1 cut(s)	625
Bsp143I	GATC	3 cut(s)	78, 1234, 1414
BspACI	CCGC	2 cut(s)	328, 382
BspANI	GGCC	2 cut(s)	308, 399
BspLI	GGNNCC	2 cut(s)	14, 1200
BspPI	GGATC	1 cut(s)	73
BspT104I	TTCGAA	2 cut(s)	348, 422
BsrI	ACTGG	2 cut(s)	45, 308
BssECI	CCNNGG	1 cut(s)	992
BssMI	GATC	3 cut(s)	78, 1234, 1414
BssT1I	CCWWGG	1 cut(s)	992
Bst6I	CTCTTC	1 cut(s)	1182
BstBAI	YACGTR	1 cut(s)	1425
BstBI	TTCGAA	2 cut(s)	348, 422
BstDEI	CTNAG	1 cut(s)	1274
BstF5I	GGATG	5 cut(s)	360, 847, 1075, 1185, 1390
BstKTI	GATC	3 cut(s)	81, 1237, 1417
BstMAI	GTCTC	1 cut(s)	78
BstMBI	GATC	3 cut(s)	78, 1234, 1414
BstMCI	CGRYCG	1 cut(s)	382
BstMWI	GCNNNNNNNGC	2 cut(s)	494, 533
BstSLI	GKGCMC	1 cut(s)	625
BstSNI	TACGTA	1 cut(s)	1425
BstV2I	GAAGAC	2 cut(s)	289, 1278
BstX2I	RGATCY	1 cut(s)	1234
BstYI	RGATCY	1 cut(s)	1234
Bsu36I	CCTNAGG	1 cut(s)	1274
BsuRI	GGCC	2 cut(s)	308, 399
BtrI	CACGTC	1 cut(s)	295
BtsCI	GGATG	5 cut(s)	360, 847, 1075, 1185, 1390
Cfr13I	GGNCC	2 cut(s)	306, 397
Csp6I	GTAC	1 cut(s)	1113
CspCI	CAANNNNNGTGG	2 cut(s)	1105, 1140
CviAII	CATG	5 cut(s)	415, 429, 547, 626, 1315
CviQI	GTAC	1 cut(s)	1113
DdeI	CTNAG	1 cut(s)	1274
DpnI	GATC	3 cut(s)	80, 1236, 1416
DpnII	GATC	3 cut(s)	78, 1234, 1414
DrdI	GACNNNNNNGTC	1 cut(s)	293
DseDI	GACNNNNNNGTC	1 cut(s)	293
Eam1104I	CTCTTC	1 cut(s)	1182
EarI	CTCTTC	1 cut(s)	1182
EciI	GGCGGA	1 cut(s)	317
Eco105I	TACGTA	1 cut(s)	1425
Eco130I	CCWWGG	1 cut(s)	992
Eco81I	CCTNAGG	1 cut(s)	1274
EcoT14I	CCWWGG	1 cut(s)	992
ErhI	CCWWGG	1 cut(s)	992
FaeI	CATG	5 cut(s)	418, 432, 550, 629, 1318
FalI	AAGNNNNNCTT	2 cut(s)	803, 835
FaqI	GGGAC	1 cut(s)	765
FatI	CATG	5 cut(s)	414, 428, 546, 625, 1314
FblI	GTMKAC	1 cut(s)	318
FokI	GGATG	5 cut(s)	367, 854, 1082, 1192, 1397
FspBI	CTAG	3 cut(s)	573, 993, 1307
GsaI	CCCAGC	1 cut(s)	398
GsuI	CTGGAG	1 cut(s)	62
HaeIII	GGCC	2 cut(s)	308, 399
Hin1II	CATG	5 cut(s)	418, 432, 550, 629, 1318
HincII	GTYRAC	1 cut(s)	319
HindII	GTYRAC	1 cut(s)	319
HinfI	GANTC	2 cut(s)	320, 542
HphI	GGTGA	5 cut(s)	111, 175, 268, 533, 1381
Hpy166II	GTNNAC	2 cut(s)	319, 687
Hpy188I	TCNGA	4 cut(s)	17, 78, 442, 1098
Hpy188III	TCNNGA	3 cut(s)	1202, 1232, 1347
Hpy8I	GTNNAC	2 cut(s)	319, 687
Hpy99I	CGWCG	1 cut(s)	320
HpyCH4IV	ACGT	2 cut(s)	294, 1424
HpyCH4V	TGCA	3 cut(s)	363, 882, 1242
HpyF10VI	GCNNNNNNNGC	2 cut(s)	494, 533
HpyF3I	CTNAG	1 cut(s)	1274
HpySE526I	ACGT	2 cut(s)	294, 1424
Hsp92II	CATG	5 cut(s)	418, 432, 550, 629, 1318
Kzo9I	GATC	3 cut(s)	78, 1234, 1414
LmnI	GCTCC	3 cut(s)	43, 261, 1303
LpnPI	CCDG	9 cut(s)	26, 289, 380, 475, 1071, 1215, 1323, 1379, 1425
LweI	GCATC	3 cut(s)	514, 1170, 1380
MaeI	CTAG	3 cut(s)	573, 993, 1307
MaeII	ACGT	2 cut(s)	294, 1424
MaeIII	GTNAC	2 cut(s)	895, 1210
MalI	GATC	3 cut(s)	80, 1236, 1416
MboI	GATC	3 cut(s)	78, 1234, 1414
MboII	GAAGA	4 cut(s)	289, 664, 1199, 1278
MflI	RGATCY	1 cut(s)	1234
MhlI	GDGCHC	1 cut(s)	625
MluCI	AATT	7 cut(s)	482, 554, 721, 728, 1042, 1219, 1243
MlyI	GAGTC	1 cut(s)	314
MmeI	TCCRAC	2 cut(s)	80, 1038
MseI	TTAA	6 cut(s)	600, 672, 693, 753, 810, 1218
MslI	CAYNNNNRTG	1 cut(s)	1331
MspA1I	CMGCKG	1 cut(s)	70
MwoI	GCNNNNNNNGC	2 cut(s)	494, 533
NdeII	GATC	3 cut(s)	78, 1234, 1414
NlaIII	CATG	5 cut(s)	418, 432, 550, 629, 1318
NlaIV	GGNNCC	2 cut(s)	14, 1200
NmeAIII	GCCGAG	1 cut(s)	415
NmuCI	GTSAC	2 cut(s)	895, 1210
NspV	TTCGAA	2 cut(s)	348, 422
PcsI	WCGNNNNNNNCGW	3 cut(s)	291, 375, 1052
PfeI	GAWTC	1 cut(s)	542
PleI	GAGTC	1 cut(s)	314
PpsI	GAGTC	1 cut(s)	314
Ppu21I	YACGTR	1 cut(s)	1425
PshBI	ATTAAT	1 cut(s)	600
PsiI	TTATAA	1 cut(s)	588
PspFI	CCCAGC	1 cut(s)	394
PspN4I	GGNNCC	2 cut(s)	14, 1200
PspPI	GGNCC	2 cut(s)	306, 397
PsuI	RGATCY	1 cut(s)	1234
PvuII	CAGCTG	1 cut(s)	70
RsaI	GTAC	1 cut(s)	1114
RsaNI	GTAC	1 cut(s)	1113
RseI	CAYNNNNRTG	1 cut(s)	1331
SalI	GTCGAC	1 cut(s)	317
SaqAI	TTAA	6 cut(s)	600, 672, 693, 753, 810, 1218
Sau3AI	GATC	3 cut(s)	78, 1234, 1414
Sau96I	GGNCC	2 cut(s)	306, 397
SchI	GAGTC	1 cut(s)	314
SduI	GDGCHC	1 cut(s)	625
SfaNI	GCATC	3 cut(s)	514, 1170, 1380
SfuI	TTCGAA	2 cut(s)	348, 422
SmiMI	CAYNNNNRTG	1 cut(s)	1331
SmlI	CTYRAG	1 cut(s)	245
SmoI	CTYRAG	1 cut(s)	245
SnaBI	TACGTA	1 cut(s)	1425
Sse9I	AATT	7 cut(s)	482, 554, 721, 728, 1042, 1219, 1243
SsiI	CCGC	2 cut(s)	328, 382
SspI	AATATT	1 cut(s)	697
SspMI	CTAG	3 cut(s)	573, 993, 1307
StyI	CCWWGG	1 cut(s)	992
TaiI	ACGT	2 cut(s)	297, 1427
TaqI	TCGA	8 cut(s)	285, 318, 348, 422, 718, 890, 974, 1289
TasI	AATT	7 cut(s)	482, 554, 721, 728, 1042, 1219, 1243
TfiI	GAWTC	1 cut(s)	542
Tru1I	TTAA	6 cut(s)	600, 672, 693, 753, 810, 1218
Tru9I	TTAA	6 cut(s)	600, 672, 693, 753, 810, 1218
TseFI	GTSAC	2 cut(s)	895, 1210
Tsp45I	GTSAC	2 cut(s)	895, 1210
TspDTI	ATGAA	2 cut(s)	178, 403
TspGWI	ACGGA	1 cut(s)	304
VspI	ATTAAT	1 cut(s)	600
XapI	RAATTY	3 cut(s)	482, 721, 1042
XmaJI	CCTAGG	1 cut(s)	992
XmiI	GTMKAC	1 cut(s)	318
XspI	CTAG	3 cut(s)	573, 993, 1307

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.