Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0005116

Physical Location & Seq

Genomic Coordinates Forward (+)

17298660 .. 17302190

Gene Structure 3531 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0197100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGAGAGTCGAGAGCCTCAGTTCTTCTTTGAGCAGCTCTTTGATTTTCGGTGCAAAGAAGCTTGATGGGTCTAGGCCATCTGCAACGTTCAGGTTTAGGCGAGTACCCATAAGCTGTGCTGTTCGTTTCCGACCCTGCATTGATATACACAAGGGGAAAGTGAAACAGATTGTTGGGTCGACGCTTTCAGATTCGAAGGAAGATGGGCCTGCTCTGGTTACCAATTTCGAGTCGGATAAGTCGGCGGGGGAGTATGCAAGGATGTATAAGGAAGATGGGCTTACAGGTGGCCATGTGATAATGCTGGGAGCAGACCCTTTGAGTAGAGCTGCGGCCATTGAAGCTCTGCATGCTTATCCTGGTGGTTTGCAAGTAGGAGGTGGGATTAATTCAGATAATTCTTTGCAGTACATAGAAGAAGGGGCTAGCCATGTCATTGTCACTTCTTATGTATTTAATAATGGGCAAATGGACCTTGAAAGGCTTAAAGATCTTGTTCGTGTTGTTGGAAAAGAAAGGCTTGTTTTAGACCTTAGCTGCAGAAAGAGGGAAGGTAAATATGCAATTGTAACTGATAGATGGCAAAAGTTCAGTGATGTGTATCTTGACAAGAAAATATTAGACTTCCTTGCCAAGTACGCAGATGAGTTTCTGGTACATGGTGTCGATGTTGAAGGGAAAAAACTGGGGATTGATGAAGAGCTTGTGGAGTTGCTTGGCAAACATTCTCCGATTCCTGTAACTTATGCTGGTGGTGTCACAGTAATGGCTGATTTAGAGAGGATAAAAGTGGCAGGGCTAGGACATGTGGATGTTACTGTCGGCAGCGCTTTGGATGTTTTCGGGGGCAACTTGCCATACAAAGAAGTCGTTGCTTGGCATACTCAGCAGGAAGCATTGACTGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001558 GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005884 GO:0006996 GO:0007010 GO:0007015 GO:0008064 GO:0008092 GO:0008150 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009987 GO:0010639 GO:0010817 GO:0015629 GO:0016043 GO:0022607 GO:0030029 GO:0030036 GO:0030832 GO:0030833 GO:0030834 GO:0030835 GO:0030837 GO:0031333 GO:0032271 GO:0032272 GO:0032432 GO:0032535 GO:0032879 GO:0032956 GO:0032970 GO:0033043 GO:0040008 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043242 GO:0043244 GO:0043254 GO:0044085 GO:0044087 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0044877 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051014 GO:0051015 GO:0051017 GO:0051049 GO:0051128 GO:0051129 GO:0051493 GO:0051494 GO:0051693 GO:0061572 GO:0065007 GO:0065008 GO:0071840 GO:0090066 GO:0097435 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0110053 GO:1901879 GO:1901880 GO:1902903 GO:1902904 GO:2000012

KEGG Pathways

Metabolic & Signaling

ko04666 ko04810 ko05203 map04666 map04810 map05203

Pfam Domains

Protein Families

Gelsolin VHP

Protein Analysis

302

Amino Acids

32.93

Weight (kDa)

6.26

Isoelectric Point (pI)

33.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
His_biosynth	PF00977	45 - 278	1.2e-28	Histidine biosynthesis protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005116)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41740 AT2G41740 AT3G57410 AT3G57410 AT3G57410 AT3G57410 AT3G57410 AT3G57410 AT3G57410 AT3G57410 AT3G57410 AT3G57410
fragaria_vesca	FvH4_6g23900 FvH4_6g23900 FvH4_6g23900 FvH4_6g23900
malus_domestica	MD12G1074400.v1.1 MD14G1072600.v1.1
prunus_persica	Prupe.7G059400_v2.0.a1
pyrus_communis	pycom12g06410 pycom14g06250
rosa_chinensis	RchiOBHm_Chr3g0482581
rosa_laevigata	RLG00000023341
rosa_roxburghii	Rroxscaffold_6G00399140
rosa_rugosa	Rorug03G0197000 Rorug03G0197100
rosa_samantha	Rh3AG248500 Rh3BG283600 Rh3DG277400
rosa_wichuraiana	Rw3G022440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	179
AciI	CCGC	2 cut(s)	245, 332
AclI	AACGTT	1 cut(s)	86
AcoI	YGGCCR	2 cut(s)	289, 333
AfaI	GTAC	4 cut(s)	105, 410, 638, 657
AfeI	AGCGCT	1 cut(s)	829
AflIII	ACRYGT	1 cut(s)	805
AgsI	TTSAA	3 cut(s)	341, 479, 674
AjnI	CCWGG	1 cut(s)	358
AluBI	AGCT	7 cut(s)	36, 61, 114, 329, 344, 537, 703
AluI	AGCT	7 cut(s)	36, 61, 114, 329, 344, 537, 703
Aor51HI	AGCGCT	1 cut(s)	829
AoxI	GGCC	4 cut(s)	74, 206, 289, 333
ApeKI	GCWGC	4 cut(s)	33, 329, 537, 825
AseI	ATTAAT	1 cut(s)	387
AspLEI	GCGC	1 cut(s)	830
AspS9I	GGNCC	2 cut(s)	206, 472
AsuII	TTCGAA	1 cut(s)	194
AsuNHI	GCTAGC	1 cut(s)	425
AvaII	GGWCC	1 cut(s)	472
BalI	TGGCCA	1 cut(s)	291
BbvI	GCAGC	4 cut(s)	45, 316, 524, 837
BccI	CCATC	5 cut(s)	59, 85, 197, 269, 573
BciT130I	CCWGG	1 cut(s)	360
BfaI	CTAG	3 cut(s)	72, 426, 800
BfmI	CTRYAG	1 cut(s)	538
BfoI	RGCGCY	1 cut(s)	831
BglII	AGATCT	1 cut(s)	490
BisI	GCNGC	5 cut(s)	34, 330, 333, 538, 826
BlsI	GCNGC	5 cut(s)	35, 331, 334, 539, 827
Bme1390I	CCNGG	1 cut(s)	360
Bme18I	GGWCC	1 cut(s)	472
BmgT120I	GGNCC	2 cut(s)	206, 472
BmrFI	CCNGG	1 cut(s)	360
BmrI	ACTGGG	1 cut(s)	695
BmtI	GCTAGC	1 cut(s)	429
BmuI	ACTGGG	1 cut(s)	695
Bpu10I	CCTNAGC	1 cut(s)	533
Bpu14I	TTCGAA	1 cut(s)	194
BsaBI	GATNNNNATC	1 cut(s)	600
Bse1I	ACTGG	1 cut(s)	690
Bse8I	GATNNNNATC	1 cut(s)	600
BseBI	CCWGG	1 cut(s)	360
BseGI	GGATG	3 cut(s)	267, 817, 841
BseJI	GATNNNNATC	1 cut(s)	600
BseMII	CTCAG	2 cut(s)	31, 899
BseNI	ACTGG	1 cut(s)	690
BseXI	GCAGC	4 cut(s)	45, 316, 524, 837
BseYI	CCCAGC	1 cut(s)	304
BshFI	GGCC	4 cut(s)	76, 208, 291, 335
BsnI	GGCC	4 cut(s)	76, 208, 291, 335
Bsp119I	TTCGAA	1 cut(s)	194
Bsp143I	GATC	1 cut(s)	490
BspACI	CCGC	2 cut(s)	245, 332
BspANI	GGCC	4 cut(s)	76, 208, 291, 335
BspCNI	CTCAG	2 cut(s)	30, 898
BspMAI	CTGCAG	1 cut(s)	542
BspOI	GCTAGC	1 cut(s)	429
BspQI	GCTCTTC	1 cut(s)	693
BspT104I	TTCGAA	1 cut(s)	194
BsrI	ACTGG	1 cut(s)	690
BssMI	GATC	1 cut(s)	490
Bst2UI	CCWGG	1 cut(s)	360
Bst4CI	ACNGT	3 cut(s)	763, 820, 904
Bst6I	CTCTTC	1 cut(s)	693
BstBI	TTCGAA	1 cut(s)	194
BstC8I	GCNNGC	3 cut(s)	210, 351, 427
BstDEI	CTNAG	3 cut(s)	17, 533, 885
BstEII	GGTNACC	1 cut(s)	217
BstF5I	GGATG	3 cut(s)	267, 817, 841
BstH2I	RGCGCY	1 cut(s)	831
BstHHI	GCGC	1 cut(s)	830
BstKTI	GATC	1 cut(s)	493
BstMBI	GATC	1 cut(s)	490
BstMWI	GCNNNNNNNGC	4 cut(s)	341, 350, 638, 886
BstNI	CCWGG	1 cut(s)	360
BstNSI	RCATGY	2 cut(s)	353, 809
BstPI	GGTNACC	1 cut(s)	217
BstSCI	CCNGG	1 cut(s)	358
BstSFI	CTRYAG	1 cut(s)	538
BstV1I	GCAGC	4 cut(s)	45, 316, 524, 837
BstX2I	RGATCY	1 cut(s)	490
BstYI	RGATCY	1 cut(s)	490
BsuRI	GGCC	4 cut(s)	76, 208, 291, 335
BtsCI	GGATG	3 cut(s)	267, 817, 841
BtsIMutI	CAGTG	1 cut(s)	598
Cac8I	GCNNGC	3 cut(s)	210, 351, 427
CfoI	GCGC	1 cut(s)	830
Cfr13I	GGNCC	2 cut(s)	206, 472
CseI	GACGC	1 cut(s)	190
Csp6I	GTAC	4 cut(s)	104, 409, 637, 656
CviAII	CATG	5 cut(s)	293, 350, 431, 659, 806
CviQI	GTAC	4 cut(s)	104, 409, 637, 656
DdeI	CTNAG	3 cut(s)	17, 533, 885
DpnI	GATC	1 cut(s)	492
DpnII	GATC	1 cut(s)	490
EaeI	YGGCCR	2 cut(s)	289, 333
Eam1104I	CTCTTC	1 cut(s)	693
EarI	CTCTTC	1 cut(s)	693
Eco47I	GGWCC	1 cut(s)	472
Eco47III	AGCGCT	1 cut(s)	829
Eco91I	GGTNACC	1 cut(s)	217
EcoO65I	GGTNACC	1 cut(s)	217
EcoRII	CCWGG	1 cut(s)	358
FaeI	CATG	5 cut(s)	296, 353, 434, 662, 809
FalI	AAGNNNNNCTT	4 cut(s)	264, 296, 504, 536
FatI	CATG	5 cut(s)	292, 349, 430, 658, 805
FauI	CCCGC	1 cut(s)	238
FblI	GTMKAC	1 cut(s)	179
Fnu4HI	GCNGC	5 cut(s)	34, 330, 333, 538, 826
FokI	GGATG	3 cut(s)	274, 824, 848
Fsp4HI	GCNGC	5 cut(s)	34, 330, 333, 538, 826
FspBI	CTAG	3 cut(s)	72, 426, 800
GlaI	GCGC	1 cut(s)	829
GluI	GCNGC	5 cut(s)	34, 330, 333, 538, 826
GsaI	CCCAGC	1 cut(s)	308
HaeII	RGCGCY	1 cut(s)	831
HaeIII	GGCC	4 cut(s)	76, 208, 291, 335
HgaI	GACGC	1 cut(s)	190
HhaI	GCGC	1 cut(s)	830
Hin1II	CATG	5 cut(s)	296, 353, 434, 662, 809
Hin6I	GCGC	1 cut(s)	828
HinP1I	GCGC	1 cut(s)	828
HincII	GTYRAC	1 cut(s)	180
HindII	GTYRAC	1 cut(s)	180
HindIII	AAGCTT	1 cut(s)	59
HinfI	GANTC	4 cut(s)	6, 191, 230, 733
Hpy166II	GTNNAC	1 cut(s)	180
Hpy188I	TCNGA	5 cut(s)	131, 190, 235, 394, 732
Hpy188III	TCNNGA	2 cut(s)	10, 605
Hpy8I	GTNNAC	1 cut(s)	180
Hpy99I	CGWCG	1 cut(s)	184
HpyAV	CCTTC	4 cut(s)	190, 413, 545, 668
HpyCH4III	ACNGT	3 cut(s)	763, 820, 904
HpyCH4IV	ACGT	1 cut(s)	86
HpyCH4V	TGCA	9 cut(s)	53, 83, 138, 257, 349, 370, 406, 540, 563
HpyF10VI	GCNNNNNNNGC	4 cut(s)	341, 350, 638, 886
HpyF3I	CTNAG	3 cut(s)	17, 533, 885
HpySE526I	ACGT	1 cut(s)	86
Hsp92II	CATG	5 cut(s)	296, 353, 434, 662, 809
HspAI	GCGC	1 cut(s)	828
Kzo9I	GATC	1 cut(s)	490
LguI	GCTCTTC	1 cut(s)	693
LmnI	GCTCC	1 cut(s)	308
Lsp1109I	GCAGC	4 cut(s)	45, 316, 524, 837
MaeI	CTAG	3 cut(s)	72, 426, 800
MaeII	ACGT	1 cut(s)	86
MaeIII	GTNAC	6 cut(s)	217, 439, 568, 739, 757, 814
MalI	GATC	1 cut(s)	492
MboI	GATC	1 cut(s)	490
MboII	GAAGA	5 cut(s)	15, 212, 284, 428, 710
MfeI	CAATTG	1 cut(s)	564
MflI	RGATCY	1 cut(s)	490
MlsI	TGGCCA	1 cut(s)	291
MluCI	AATT	4 cut(s)	223, 388, 397, 564
MluNI	TGGCCA	1 cut(s)	291
MlyI	GAGTC	2 cut(s)	15, 239
MmeI	TCCRAC	3 cut(s)	154, 213, 487
MnlI	CCTC	4 cut(s)	26, 371, 540, 774
Mox20I	TGGCCA	1 cut(s)	291
MscI	TGGCCA	1 cut(s)	291
MseI	TTAA	3 cut(s)	387, 456, 486
MslI	CAYNNNNRTG	2 cut(s)	764, 810
Msp20I	TGGCCA	1 cut(s)	291
MspR9I	CCNGG	1 cut(s)	360
MunI	CAATTG	1 cut(s)	564
MvaI	CCWGG	1 cut(s)	360
MwoI	GCNNNNNNNGC	4 cut(s)	341, 350, 638, 886
NdeII	GATC	1 cut(s)	490
NheI	GCTAGC	1 cut(s)	425
NlaIII	CATG	5 cut(s)	296, 353, 434, 662, 809
NmuCI	GTSAC	2 cut(s)	439, 757
NspI	RCATGY	2 cut(s)	353, 809
NspV	TTCGAA	1 cut(s)	194
PaeI	GCATGC	1 cut(s)	353
PciI	ACATGT	1 cut(s)	805
PciSI	GCTCTTC	1 cut(s)	693
PfeI	GAWTC	2 cut(s)	191, 733
PkrI	GCNGC	5 cut(s)	35, 331, 334, 539, 827
PleI	GAGTC	2 cut(s)	14, 238
PpsI	GAGTC	2 cut(s)	14, 238
PscI	ACATGT	1 cut(s)	805
PshBI	ATTAAT	1 cut(s)	387
Psp1406I	AACGTT	1 cut(s)	86
Psp6I	CCWGG	1 cut(s)	358
PspEI	GGTNACC	1 cut(s)	217
PspFI	CCCAGC	1 cut(s)	304
PspGI	CCWGG	1 cut(s)	358
PspPI	GGNCC	2 cut(s)	206, 472
PstI	CTGCAG	1 cut(s)	542
PsuI	RGATCY	1 cut(s)	490
RsaI	GTAC	4 cut(s)	105, 410, 638, 657
RsaNI	GTAC	4 cut(s)	104, 409, 637, 656
RseI	CAYNNNNRTG	2 cut(s)	764, 810
SalI	GTCGAC	1 cut(s)	178
SapI	GCTCTTC	1 cut(s)	693
SaqAI	TTAA	3 cut(s)	387, 456, 486
SatI	GCNGC	5 cut(s)	34, 330, 333, 538, 826
Sau3AI	GATC	1 cut(s)	490
Sau96I	GGNCC	2 cut(s)	206, 472
SchI	GAGTC	2 cut(s)	15, 239
ScrFI	CCNGG	1 cut(s)	360
SfcI	CTRYAG	1 cut(s)	538
SfuI	TTCGAA	1 cut(s)	194
SinI	GGWCC	1 cut(s)	472
SmiMI	CAYNNNNRTG	2 cut(s)	764, 810
SphI	GCATGC	1 cut(s)	353
Sse9I	AATT	4 cut(s)	223, 388, 397, 564
SsiI	CCGC	2 cut(s)	245, 332
SspI	AATATT	1 cut(s)	618
SspMI	CTAG	3 cut(s)	72, 426, 800
StyD4I	CCNGG	1 cut(s)	358
TaaI	ACNGT	3 cut(s)	763, 820, 904
TaiI	ACGT	1 cut(s)	89
TaqI	TCGA	5 cut(s)	9, 179, 194, 228, 666
TasI	AATT	4 cut(s)	223, 388, 397, 564
TatI	WGTACW	1 cut(s)	408
TauI	GCSGC	1 cut(s)	335
TfiI	GAWTC	2 cut(s)	191, 733
Tru1I	TTAA	3 cut(s)	387, 456, 486
Tru9I	TTAA	3 cut(s)	387, 456, 486
TscAI	CASTG	1 cut(s)	598
TseFI	GTSAC	2 cut(s)	439, 757
TseI	GCWGC	4 cut(s)	33, 329, 537, 825
Tsp45I	GTSAC	2 cut(s)	439, 757
TspDTI	ATGAA	1 cut(s)	711
TspRI	CASTG	1 cut(s)	598
VpaK11BI	GGWCC	1 cut(s)	472
VspI	ATTAAT	1 cut(s)	387
XceI	RCATGY	2 cut(s)	353, 809
XmiI	GTMKAC	1 cut(s)	179
XspI	CTAG	3 cut(s)	72, 426, 800

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.