Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0005116

Physical Location & Seq

Genomic Coordinates Forward (+)

27457909 .. 27469476

Gene Structure 11568 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G022440.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2826 bp

ATGGCTAGCTCTACAAAAGCTATGGATCCAGCTTTTCAGGGAGCAGGTCAAAGGGTAGGGACTGAAATTTGGCGAATTGAGGATTTCCAGCCAGTTCCGTTGCCAAAATCTGAATATGGAAAATTCTATATGGGAGATTCTTATATTGTCTTGCAGACAACACAGAACAAAGGGGGTGCTTATCTCTATGACATCCACTTCTGGATTGGGAAAGATACAAGTCAGGATGAAGCTGGCACAGCAGCTATTAAAACTGTTGAACTAGATACAGCTCTTGGTGGACGTGCTGTGCAACATAGGGAAATTCAAGGCCATGAATCTGATAAGTTTTTGTCCTACTTCAAACCATGTATTATACCACTGGAGGGGGGTGTTGCATCTGGATTTAAAAAGCCTGAGGAAGAAGAATTTGAAACTCGACTTTATATCTGCAGAGGAAAACGTGTTGTCAGAATGAAGCAGGTTCCTTTTGCGCGTTCGTCACTGAATCATGATGATGTGTTCATCCTGGACAGCCAGAATAAGATCTTTCAGTTCAACGGTGCGAATTCCAATATCCAGGAAAGGGCAAAGGCTTTGGAAGTCATCCAATTTTTGAAAGAAAAGTATCATCATGGGACATGTGATGTTGCAATAGTTGATGATGGGAAGCTAGACACAGAATCTGACTCTGGTGAGTTCTGGGTCCTAATGGGTGGCTTTGCTCCGATTAGCAAGAAGGTTGCCAATGAAGATGATGTCGTTCCTGAGTCCATTCCTGCTACACTGTATAGCATAACTGATGGTGAAGTGAAGATCGTAGAAGGTGAACTATCCAAATCCTTGCTTGAAAACAACAAATGCTACTTACTGGACTGTGGTTCTGAAGTATTTGTTTGGGTCGGTCGGGTGACACAAGTGGAGGACAGAAAAGCTGCTAGCCAAGCAGCTGAGGAATTTGTTTCTCATCACAATAGACCAAAATCAACACGAATAACCCGGCTTATTCAAGGTTATGAGACACGTTCATTCAAGTCCAACTTTGATTCTTGGCCATTGGGATCAGCAACGTCTGGTGCTGAGGAGGGAAGAGGAAAAGTAGCAGCTTTGCTGAAGCAACAAGGTGTTGGTGTAAAGGGCGCGACAAAGGGTGCCCCTGTAAATGAAGAGGTCCCACCTTTGCTTGAAGGAGGTGGAAAGATGGAGGTATGGTGCATCAATGGCAGCGCTAAAACCCAATTACCTAAGGAAGATATTGGCAAATTTTTTAGTGGAGATTGCTACATAATTCTTTATACGTACCACTCTGGTGATAGAAAGGATGACTACTTTCTGTGCTGTTGGTTTGGAAAGGATAGTATTGAGGAGGACCAGAAAACAGCTTCTCATTTGGCGACTTCAATTTCCAACTCACTGAAGGGAAGACCAGTTCAGGGTCACATATTCCAAGCTAAAGAGCCACCACAGTTTGTTGCGCTCTTTCAGCCTATGGTTGTTCTCAAGGGTGGCCTGAGCTCTGGGTATAAAAAGTTTGTTGAGGAGAAAGGGTTGGCTGATGAAACTTACACAGCAGAGTGTGTTGCACTCTTTCGGTTATCTGGAACCTCTATTCATAATAACAAAGCAGTGCAAGTTGATACGGTGGCAACGTCATTGAACTCTACCGAGTGTTTTCTTCTGCAATCTGGCTCCTCAGTTTTTGCTTGGAATGGAAATCAATCCACCATTGAGCAGCAACAGTTAGCAGCAAAGCTTGCAGAATTTCTGAAGCCAGGAGTTACTTTAAAACATGCTAAAGAAGGAACTGAGAGCTCAACCTTCTGGTCTGCCCTAGGAGGGAAACAAAATTACACCAGTAATAAAGTTGCTTCTGAGATTTGCAGAGATCCCCACCTGTTCACATTCTCATTCAACAAAGGAAAGTTTCAGGTGGAAGAAATATACAACTTTACTCAAGATGATCTACTGACAGAGGATATCCTTATACTGGATGCACATGCTGAAGTCTTTGTTTGGGTTGGTCAATGTGTAGACTTGAAAGAAAAACAAAATGCTTTTGAAATTGGCAAGAAATACATAGAGATGGCAGCATCTCTGGACGGGTTGTCTCCTAATGTACCATTGTACAAAGTTACTGAAGGAAATGAACCTCGCTTCTTCACAACATACTTTTCATGGGACCTTGCAAAGGCTAATGTTCAAGGAAACTCATTCCAGAAGAAGGTGTCCGTTCTGTTTGGCCATGCTGTGGAGAGCCAGGAAAAATCTGATGGGAATCAAGGAGGGCCAAGGCAAAGAGCTGAGGCCTTAGCTGCTCTATCATCTGCATTCAATTCTTCCCCTGGAAAATCACCCCCTACGGATAAGTCCAATGGGTCGAGCGAAGGAGGACCAAGGCAAAGAGCAGAAGCTTTAGCCGCTTTATCTTCTGCATTTAGTTCATCCTCTGGAACCAAACCTTCTCTTCCCAAGCCTTCTTCAACAAGTCAAGGATCACAAAGAGCCGCAGCAGTTGCTGCACTTTCAAACGTCCTTACAGCGGAAAAGAGTAAGTTAACACCTGATGCCTCTCCAGTGCAAAGTCCCCAAGTACAAAGCCCTCCTGCAGAAACTAGTGCTGATACAGATGGTTCTCAGGAAGTTCCTGAAGAAAAGGAAACAGATGCTGTTTCGCCGCTTCTGTCTCAGAACCAAAGCAAGAGCAGGATGAAAATGGCAGTGAAAGCAGTCAAAGCCTACCTCTCTGATGAAGACTTTCAGACCATATTTGGGATGACGAAAGATGCTTTCTATCAACTGCCAAAATGGAAGCAAGACATGCAAAAGAAGAAAGCTGATTTGTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001558 GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005884 GO:0006996 GO:0007010 GO:0007015 GO:0008064 GO:0008092 GO:0008150 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009987 GO:0010639 GO:0010817 GO:0015629 GO:0016043 GO:0022607 GO:0030029 GO:0030036 GO:0030832 GO:0030833 GO:0030834 GO:0030835 GO:0030837 GO:0031333 GO:0032271 GO:0032272 GO:0032432 GO:0032535 GO:0032879 GO:0032956 GO:0032970 GO:0033043 GO:0040008 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043242 GO:0043244 GO:0043254 GO:0044085 GO:0044087 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0044877 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051014 GO:0051015 GO:0051017 GO:0051049 GO:0051128 GO:0051129 GO:0051493 GO:0051494 GO:0051693 GO:0061572 GO:0065007 GO:0065008 GO:0071840 GO:0090066 GO:0097435 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0110053 GO:1901879 GO:1901880 GO:1902903 GO:1902904 GO:2000012

KEGG Pathways

Metabolic & Signaling

ko04666 ko04810 ko05203 map04666 map04810 map05203

Pfam Domains

Protein Families

Gelsolin VHP

Protein Analysis

941

Amino Acids

103.18

Weight (kDa)

5.71

Isoelectric Point (pI)

41.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Gelsolin	PF00626	30 - 111	3.1e-13	Gelsolin repeat
Gelsolin	PF00626	149 - 217	1.4e-11	Gelsolin repeat
Gelsolin	PF00626	267 - 337	1.5e-11	Gelsolin repeat
Gelsolin	PF00626	409 - 483	1.1e-07	Gelsolin repeat
Gelsolin	PF00626	533 - 593	7.9e-07	Gelsolin repeat
Gelsolin	PF00626	635 - 713	8.5e-06	Gelsolin repeat
VHP	PF02209	906 - 941	5.1e-18	Villin headpiece domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005116)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41740 AT2G41740 AT3G57410 AT3G57410 AT3G57410 AT3G57410 AT3G57410 AT3G57410 AT3G57410 AT3G57410 AT3G57410 AT3G57410
fragaria_vesca	FvH4_6g23900 FvH4_6g23900 FvH4_6g23900 FvH4_6g23900
malus_domestica	MD12G1074400.v1.1 MD14G1072600.v1.1
prunus_persica	Prupe.7G059400_v2.0.a1
pyrus_communis	pycom12g06410 pycom14g06250
rosa_chinensis	RchiOBHm_Chr3g0482581
rosa_laevigata	RLG00000023341
rosa_roxburghii	Rroxscaffold_6G00399140
rosa_rugosa	Rorug03G0197000 Rorug03G0197100
rosa_samantha	Rh3AG248500 Rh3BG283600 Rh3DG277400
rosa_wichuraiana	Rw3G022440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	35, 451
AccB1I	GGYRCC	1 cut(s)	1130
AccB7I	CCANNNNNTGG	1 cut(s)	2227
AccI	GTMKAC	1 cut(s)	2010
AccII	CGCG	2 cut(s)	475, 1121
AciI	CCGC	4 cut(s)	2397, 2484, 2519, 2654
AclWI	GGATC	5 cut(s)	20, 33, 1048, 1859, 2479
AcoI	YGGCCR	2 cut(s)	1031, 2218
AcsI	RAATTY	8 cut(s)	66, 122, 303, 407, 547, 935, 1241, 1739
AcuI	CTGAAG	7 cut(s)	885, 1112, 1415, 1766, 2001, 2136, 2646
AfaI	GTAC	4 cut(s)	1280, 2097, 2105, 2571
AfeI	AGCGCT	1 cut(s)	1207
AflIII	ACRYGT	3 cut(s)	442, 620, 1001
AhdI	GACNNNNNGTC	1 cut(s)	2083
AhlI	ACTAGT	1 cut(s)	2591
AjiI	CACGTC	1 cut(s)	284
AjnI	CCWGG	5 cut(s)	507, 558, 1750, 2235, 2320
AleI	CACNNNNGTG	1 cut(s)	1287
AloI	GAACNNNNNNTCC	2 cut(s)	1392, 1424
Alw21I	GWGCWC	2 cut(s)	1496, 1793
Alw26I	GTCTC	3 cut(s)	992, 2091, 2667
AlwI	GGATC	5 cut(s)	20, 33, 1048, 1859, 2479
AlwNI	CAGNNNCTG	3 cut(s)	665, 2495, 2645
Aor51HI	AGCGCT	1 cut(s)	1207
AoxI	GGCC	6 cut(s)	310, 1031, 1486, 2218, 2264, 2283
ApoI	RAATTY	8 cut(s)	66, 122, 303, 407, 547, 935, 1241, 1739
Asp700I	GAANNNNTTC	1 cut(s)	2733
AspA2I	CCTAGG	1 cut(s)	1810
AspLEI	GCGC	4 cut(s)	475, 1121, 1208, 1456
AspS9I	GGNCC	6 cut(s)	685, 1150, 1348, 2158, 2264, 2369
AsuC2I	CCSGG	1 cut(s)	979
AsuHPI	GGTGA	6 cut(s)	686, 797, 818, 901, 1301, 2322
AsuNHI	GCTAGC	2 cut(s)	5, 917
AvaII	GGWCC	5 cut(s)	685, 1150, 1348, 2158, 2369
AvrII	CCTAGG	1 cut(s)	1810
AxyI	CCTNAGG	2 cut(s)	396, 1224
BaeGI	GKGCMC	1 cut(s)	1135
BalI	TGGCCA	2 cut(s)	1033, 2220
BamHI	GGATCC	1 cut(s)	25
BanI	GGYRCC	1 cut(s)	1130
BanII	GRGCYC	2 cut(s)	1496, 1793
BbsI	GAAGAC	2 cut(s)	1408, 2736
Bbv12I	GWGCWC	2 cut(s)	1496, 1793
BbvCI	CCTCAGC	3 cut(s)	930, 1059, 2280
BccI	CCATC	6 cut(s)	638, 776, 1174, 2056, 2243, 2600
BciT130I	CCWGG	5 cut(s)	509, 560, 1752, 2237, 2322
BcnI	CCSGG	1 cut(s)	979
BcoDI	GTCTC	3 cut(s)	992, 2091, 2667
BcuI	ACTAGT	1 cut(s)	2591
BfaI	CTAG	7 cut(s)	6, 263, 653, 918, 1811, 2592, 2824
BfmI	CTRYAG	2 cut(s)	430, 2583
BfoI	RGCGCY	1 cut(s)	1209
BfuAI	ACCTGC	2 cut(s)	35, 451
BglII	AGATCT	1 cut(s)	525
BlnI	CCTAGG	1 cut(s)	1810
Bme1390I	CCNGG	6 cut(s)	509, 560, 979, 1752, 2237, 2322
Bme18I	GGWCC	5 cut(s)	685, 1150, 1348, 2158, 2369
BmeRI	GACNNNNNGTC	1 cut(s)	2083
BmgBI	CACGTC	1 cut(s)	284
BmgT120I	GGNCC	6 cut(s)	685, 1150, 1348, 2158, 2264, 2369
BmiI	GGNNCC	9 cut(s)	27, 465, 686, 1132, 1152, 1582, 1669, 2159, 2431
BmrFI	CCNGG	6 cut(s)	509, 560, 979, 1752, 2237, 2322
BmsI	GCATC	7 cut(s)	386, 1203, 1960, 2078, 2533, 2632, 2752
BmtI	GCTAGC	2 cut(s)	9, 921
BpiI	GAAGAC	2 cut(s)	1408, 2736
BpmI	CTGGAG	2 cut(s)	383, 2535
Bpu10I	CCTNAGC	5 cut(s)	930, 1059, 1490, 2280, 2287
BpuEI	CTTGAG	2 cut(s)	1463, 1917
BpuMI	CCSGG	1 cut(s)	979
BsaAI	YACGTR	1 cut(s)	1278
BsaBI	GATNNNNATC	1 cut(s)	2253
BsaJI	CCNNGG	4 cut(s)	1810, 2267, 2320, 2372
BsaXI	ACNNNNNCTCC	4 cut(s)	1175, 1205, 1511, 1541
Bse1I	ACTGG	7 cut(s)	92, 366, 855, 1406, 1833, 1971, 2552
Bse21I	CCTNAGG	2 cut(s)	396, 1224
Bse8I	GATNNNNATC	1 cut(s)	2253
BseBI	CCWGG	5 cut(s)	509, 560, 1752, 2237, 2322
BseDI	CCNNGG	4 cut(s)	1810, 2267, 2320, 2372
BseGI	GGATG	9 cut(s)	192, 232, 504, 585, 1306, 1975, 2420, 2691, 2757
BseJI	GATNNNNATC	1 cut(s)	2253
BseNI	ACTGG	7 cut(s)	92, 366, 855, 1406, 1833, 1971, 2552
BseRI	GAGGAG	4 cut(s)	1076, 1358, 1532, 1660
BseSI	GKGCMC	1 cut(s)	1135
BsgI	GTGCAG	1 cut(s)	2481
Bsh1236I	CGCG	2 cut(s)	475, 1121
Bsh1285I	CGRYCG	1 cut(s)	886
BshFI	GGCC	6 cut(s)	312, 1033, 1488, 2220, 2266, 2285
BshNI	GGYRCC	1 cut(s)	1130
BsiEI	CGRYCG	1 cut(s)	886
BsiHKAI	GWGCWC	2 cut(s)	1496, 1793
BsiSI	CCGG	1 cut(s)	979
BslFI	GGGAC	5 cut(s)	73, 631, 1136, 2171, 2547
BsmAI	GTCTC	3 cut(s)	992, 2091, 2667
BsmFI	GGGAC	5 cut(s)	73, 631, 1136, 2171, 2547
BsmI	GAATGC	1 cut(s)	2306
BsnI	GGCC	6 cut(s)	312, 1033, 1488, 2220, 2266, 2285
Bsp1286I	GDGCHC	3 cut(s)	1135, 1496, 1793
Bsp1407I	TGTACA	1 cut(s)	2103
Bsp143I	GATC	7 cut(s)	25, 525, 795, 1040, 1864, 1939, 2471
BspACI	CCGC	4 cut(s)	2397, 2484, 2519, 2654
BspANI	GGCC	6 cut(s)	312, 1033, 1488, 2220, 2266, 2285
BspFNI	CGCG	2 cut(s)	475, 1121
BspHI	TCATGA	1 cut(s)	490
BspLI	GGNNCC	9 cut(s)	27, 465, 686, 1132, 1152, 1582, 1669, 2159, 2431
BspMAI	CTGCAG	2 cut(s)	434, 2587
BspMI	ACCTGC	2 cut(s)	35, 451
BspOI	GCTAGC	2 cut(s)	9, 921
BspPI	GGATC	5 cut(s)	20, 33, 1048, 1859, 2479
BspT107I	GGYRCC	1 cut(s)	1130
BsrGI	TGTACA	1 cut(s)	2103
BsrI	ACTGG	7 cut(s)	92, 366, 855, 1406, 1833, 1971, 2552
BssECI	CCNNGG	4 cut(s)	1810, 2267, 2320, 2372
BssMI	GATC	7 cut(s)	25, 525, 795, 1040, 1864, 1939, 2471
BssT1I	CCWWGG	3 cut(s)	1810, 2267, 2372
Bst2UI	CCWGG	5 cut(s)	509, 560, 1752, 2237, 2322
Bst4CI	ACNGT	7 cut(s)	256, 542, 768, 857, 1446, 1621, 1719
Bst6I	CTCTTC	3 cut(s)	1063, 1140, 2448
BstAPI	GCANNNNNTGC	4 cut(s)	1733, 2492, 2495, 2797
BstAUI	TGTACA	1 cut(s)	2103
BstBAI	YACGTR	1 cut(s)	1278
BstC8I	GCNNGC	4 cut(s)	7, 235, 919, 1734
BstENI	CCTNNNNNAGG	1 cut(s)	2165
BstF5I	GGATG	9 cut(s)	192, 232, 504, 585, 1306, 1975, 2420, 2691, 2757
BstFNI	CGCG	2 cut(s)	475, 1121
BstH2I	RGCGCY	1 cut(s)	1209
BstHHI	GCGC	4 cut(s)	475, 1121, 1208, 1456
BstKTI	GATC	7 cut(s)	28, 528, 798, 1043, 1867, 1942, 2474
BstMAI	GTCTC	3 cut(s)	992, 2091, 2667
BstMBI	GATC	7 cut(s)	25, 525, 795, 1040, 1864, 1939, 2471
BstMCI	CGRYCG	1 cut(s)	886
BstNI	CCWGG	5 cut(s)	509, 560, 1752, 2237, 2322
BstNSI	RCATGY	4 cut(s)	624, 1772, 1979, 2800
BstSCI	CCNGG	6 cut(s)	507, 558, 977, 1750, 2235, 2320
BstSFI	CTRYAG	2 cut(s)	430, 2583
BstSLI	GKGCMC	1 cut(s)	1135
BstSNI	TACGTA	1 cut(s)	1278
BstUI	CGCG	2 cut(s)	475, 1121
BstV2I	GAAGAC	2 cut(s)	1408, 2736
BstX2I	RGATCY	3 cut(s)	25, 525, 1864
BstYI	RGATCY	3 cut(s)	25, 525, 1864
Bsu36I	CCTNAGG	2 cut(s)	396, 1224
BsuRI	GGCC	6 cut(s)	312, 1033, 1488, 2220, 2266, 2285
BtrI	CACGTC	1 cut(s)	284
BtsCI	GGATG	9 cut(s)	192, 232, 504, 585, 1306, 1975, 2420, 2691, 2757
BtsI	GCAGTG	2 cut(s)	1611, 2703
BtsIMutI	CAGTG	7 cut(s)	359, 482, 764, 1391, 1611, 2559, 2703
BveI	ACCTGC	2 cut(s)	35, 451
Cac8I	GCNNGC	4 cut(s)	7, 235, 919, 1734
CaiI	CAGNNNCTG	3 cut(s)	665, 2495, 2645
CciI	TCATGA	1 cut(s)	490
CfoI	GCGC	4 cut(s)	475, 1121, 1208, 1456
Cfr13I	GGNCC	6 cut(s)	685, 1150, 1348, 2158, 2264, 2369
Csp6I	GTAC	4 cut(s)	1279, 2096, 2104, 2570
CviQI	GTAC	4 cut(s)	1279, 2096, 2104, 2570
DpnI	GATC	7 cut(s)	27, 527, 797, 1042, 1866, 1941, 2473
DpnII	GATC	7 cut(s)	25, 525, 795, 1040, 1864, 1939, 2471
DraI	TTTAAA	2 cut(s)	388, 1764
DriI	GACNNNNNGTC	1 cut(s)	2083
EaeI	YGGCCR	2 cut(s)	1031, 2218
Eam1104I	CTCTTC	3 cut(s)	1063, 1140, 2448
Eam1105I	GACNNNNNGTC	1 cut(s)	2083
EarI	CTCTTC	3 cut(s)	1063, 1140, 2448
Ecl136II	GAGCTC	2 cut(s)	1494, 1791
Eco105I	TACGTA	1 cut(s)	1278
Eco130I	CCWWGG	3 cut(s)	1810, 2267, 2372
Eco147I	AGGCCT	1 cut(s)	2285
Eco24I	GRGCYC	2 cut(s)	1496, 1793
Eco32I	GATATC	1 cut(s)	1957
Eco47I	GGWCC	5 cut(s)	685, 1150, 1348, 2158, 2369
Eco47III	AGCGCT	1 cut(s)	1207
Eco53kI	GAGCTC	2 cut(s)	1494, 1791
Eco57I	CTGAAG	7 cut(s)	885, 1112, 1415, 1766, 2001, 2136, 2646
Eco81I	CCTNAGG	2 cut(s)	396, 1224
EcoICRI	GAGCTC	2 cut(s)	1494, 1791
EcoNI	CCTNNNNNAGG	1 cut(s)	2165
EcoO109I	RGGNCCY	3 cut(s)	685, 1150, 2158
EcoRI	GAATTC	1 cut(s)	547
EcoRII	CCWGG	5 cut(s)	507, 558, 1750, 2235, 2320
EcoRV	GATATC	1 cut(s)	1957
EcoT14I	CCWWGG	3 cut(s)	1810, 2267, 2372
EcoT38I	GRGCYC	2 cut(s)	1496, 1793
ErhI	CCWWGG	3 cut(s)	1810, 2267, 2372
FalI	AAGNNNNNCTT	2 cut(s)	1004, 1036
FaqI	GGGAC	5 cut(s)	73, 631, 1136, 2171, 2547
FblI	GTMKAC	1 cut(s)	2010
FokI	GGATG	9 cut(s)	179, 239, 491, 572, 1313, 1982, 2407, 2698, 2764
FriOI	GRGCYC	2 cut(s)	1496, 1793
FspBI	CTAG	7 cut(s)	6, 263, 653, 918, 1811, 2592, 2824
GlaI	GCGC	4 cut(s)	474, 1120, 1207, 1455
GsuI	CTGGAG	2 cut(s)	383, 2535
HaeII	RGCGCY	1 cut(s)	1209
HaeIII	GGCC	6 cut(s)	312, 1033, 1488, 2220, 2266, 2285
HapII	CCGG	1 cut(s)	979
HhaI	GCGC	4 cut(s)	475, 1121, 1208, 1456
Hin6I	GCGC	4 cut(s)	473, 1119, 1206, 1454
HinP1I	GCGC	4 cut(s)	473, 1119, 1206, 1454
HincII	GTYRAC	1 cut(s)	2535
HindII	GTYRAC	1 cut(s)	2535
HindIII	AAGCTT	2 cut(s)	1730, 2388
HinfI	GANTC	8 cut(s)	137, 317, 487, 662, 668, 749, 1025, 2254
HpaI	GTTAAC	1 cut(s)	2535
HpaII	CCGG	1 cut(s)	979
HphI	GGTGA	6 cut(s)	686, 797, 818, 901, 1301, 2322
Hpy166II	GTNNAC	5 cut(s)	281, 809, 1878, 2011, 2535
Hpy8I	GTNNAC	5 cut(s)	281, 809, 1878, 2011, 2535
HpyCH4III	ACNGT	7 cut(s)	256, 542, 768, 857, 1446, 1621, 1719
HpyCH4IV	ACGT	7 cut(s)	283, 442, 1003, 1049, 1277, 1628, 2508
HpySE526I	ACGT	7 cut(s)	283, 442, 1003, 1049, 1277, 1628, 2508
HspAI	GCGC	4 cut(s)	473, 1119, 1206, 1454
KspAI	GTTAAC	1 cut(s)	2535
Kzo9I	GATC	7 cut(s)	25, 525, 795, 1040, 1864, 1939, 2471
LmnI	GCTCC	3 cut(s)	41, 709, 1673
LweI	GCATC	7 cut(s)	386, 1203, 1960, 2078, 2533, 2632, 2752
MaeI	CTAG	7 cut(s)	6, 263, 653, 918, 1811, 2592, 2824
MaeII	ACGT	7 cut(s)	283, 442, 1003, 1049, 1277, 1628, 2508
MaeIII	GTNAC	5 cut(s)	480, 889, 1415, 1756, 2110
MalI	GATC	7 cut(s)	27, 527, 797, 1042, 1866, 1941, 2473
MboI	GATC	7 cut(s)	25, 525, 795, 1040, 1864, 1939, 2471
MflI	RGATCY	3 cut(s)	25, 525, 1864
MhlI	GDGCHC	3 cut(s)	1135, 1496, 1793
MlsI	TGGCCA	2 cut(s)	1033, 2220
MluNI	TGGCCA	2 cut(s)	1033, 2220
MlyI	GAGTC	2 cut(s)	662, 758
MmeI	TCCRAC	2 cut(s)	1041, 1410
Mox20I	TGGCCA	2 cut(s)	1033, 2220
MroXI	GAANNNNTTC	1 cut(s)	2733
MscI	TGGCCA	2 cut(s)	1033, 2220
MseI	TTAA	4 cut(s)	249, 387, 1763, 2534
MslI	CAYNNNNRTG	3 cut(s)	495, 1287, 2060
Msp20I	TGGCCA	2 cut(s)	1033, 2220
MspA1I	CMGCKG	2 cut(s)	929, 2519
MspI	CCGG	1 cut(s)	979
MspR9I	CCNGG	6 cut(s)	509, 560, 979, 1752, 2237, 2322
Mva1269I	GAATGC	1 cut(s)	2306
MvaI	CCWGG	5 cut(s)	509, 560, 1752, 2237, 2322
MvnI	CGCG	2 cut(s)	475, 1121
NciI	CCSGG	1 cut(s)	979
NdeII	GATC	7 cut(s)	25, 525, 795, 1040, 1864, 1939, 2471
NheI	GCTAGC	2 cut(s)	5, 917
NlaIV	GGNNCC	9 cut(s)	27, 465, 686, 1132, 1152, 1582, 1669, 2159, 2431
NmuCI	GTSAC	3 cut(s)	480, 889, 1415
NspI	RCATGY	4 cut(s)	624, 1772, 1979, 2800
OliI	CACNNNNGTG	1 cut(s)	1287
PagI	TCATGA	1 cut(s)	490
PceI	AGGCCT	1 cut(s)	2285
PciI	ACATGT	1 cut(s)	620
PcsI	WCGNNNNNNNCGW	1 cut(s)	1625
PctI	GAATGC	1 cut(s)	2306
PdmI	GAANNNNTTC	1 cut(s)	2733
PfeI	GAWTC	6 cut(s)	137, 317, 487, 662, 1025, 2254
PflMI	CCANNNNNTGG	1 cut(s)	2227
PfoI	TCCNGGA	2 cut(s)	507, 558
PleI	GAGTC	2 cut(s)	662, 757
PpsI	GAGTC	2 cut(s)	662, 757
Ppu21I	YACGTR	1 cut(s)	1278
PpuMI	RGGWCCY	3 cut(s)	685, 1150, 2158
PscI	ACATGT	1 cut(s)	620
Psp124BI	GAGCTC	2 cut(s)	1496, 1793
Psp5II	RGGWCCY	3 cut(s)	685, 1150, 2158
Psp6I	CCWGG	5 cut(s)	507, 558, 1750, 2235, 2320
PspGI	CCWGG	5 cut(s)	507, 558, 1750, 2235, 2320
PspN4I	GGNNCC	9 cut(s)	27, 465, 686, 1132, 1152, 1582, 1669, 2159, 2431
PspPI	GGNCC	6 cut(s)	685, 1150, 1348, 2158, 2264, 2369
PspPPI	RGGWCCY	3 cut(s)	685, 1150, 2158
PstI	CTGCAG	2 cut(s)	434, 2587
PstNI	CAGNNNCTG	3 cut(s)	665, 2495, 2645
PsuI	RGATCY	3 cut(s)	25, 525, 1864
PvuII	CAGCTG	1 cut(s)	929
RsaI	GTAC	4 cut(s)	1280, 2097, 2105, 2571
RsaNI	GTAC	4 cut(s)	1279, 2096, 2104, 2570
RseI	CAYNNNNRTG	3 cut(s)	495, 1287, 2060
SacI	GAGCTC	2 cut(s)	1496, 1793
SaqAI	TTAA	4 cut(s)	249, 387, 1763, 2534
Sau3AI	GATC	7 cut(s)	25, 525, 795, 1040, 1864, 1939, 2471
Sau96I	GGNCC	6 cut(s)	685, 1150, 1348, 2158, 2264, 2369
SchI	GAGTC	2 cut(s)	662, 758
ScrFI	CCNGG	6 cut(s)	509, 560, 979, 1752, 2237, 2322
SduI	GDGCHC	3 cut(s)	1135, 1496, 1793
SfaNI	GCATC	7 cut(s)	386, 1203, 1960, 2078, 2533, 2632, 2752
SfcI	CTRYAG	2 cut(s)	430, 2583
SinI	GGWCC	5 cut(s)	685, 1150, 1348, 2158, 2369
SmiMI	CAYNNNNRTG	3 cut(s)	495, 1287, 2060
SmlI	CTYRAG	2 cut(s)	1478, 1932
SmoI	CTYRAG	2 cut(s)	1478, 1932
SnaBI	TACGTA	1 cut(s)	1278
SpeI	ACTAGT	1 cut(s)	2591
SseBI	AGGCCT	1 cut(s)	2285
SsiI	CCGC	4 cut(s)	2397, 2484, 2519, 2654
SspMI	CTAG	7 cut(s)	6, 263, 653, 918, 1811, 2592, 2824
SstI	GAGCTC	2 cut(s)	1496, 1793
StuI	AGGCCT	1 cut(s)	2285
StyD4I	CCNGG	6 cut(s)	507, 558, 977, 1750, 2235, 2320
StyI	CCWWGG	3 cut(s)	1810, 2267, 2372
TaaI	ACNGT	7 cut(s)	256, 542, 768, 857, 1446, 1621, 1719
TaiI	ACGT	7 cut(s)	286, 445, 1006, 1052, 1280, 1631, 2511
TaqI	TCGA	2 cut(s)	418, 2357
TaqII	GACCGA	1 cut(s)	872
TatI	WGTACW	2 cut(s)	2103, 2569
TauI	GCSGC	3 cut(s)	2399, 2486, 2656
TfiI	GAWTC	6 cut(s)	137, 317, 487, 662, 1025, 2254
Tru1I	TTAA	4 cut(s)	249, 387, 1763, 2534
Tru9I	TTAA	4 cut(s)	249, 387, 1763, 2534
TscAI	CASTG	7 cut(s)	366, 489, 771, 1398, 1611, 2559, 2703
TseFI	GTSAC	3 cut(s)	480, 889, 1415
Tsp45I	GTSAC	3 cut(s)	480, 889, 1415
TspGWI	ACGGA	3 cut(s)	87, 2197, 2354
TspRI	CASTG	7 cut(s)	366, 489, 771, 1398, 1611, 2559, 2703
Van91I	CCANNNNNTGG	1 cut(s)	2227
VpaK11BI	GGWCC	5 cut(s)	685, 1150, 1348, 2158, 2369
XagI	CCTNNNNNAGG	1 cut(s)	2165
XapI	RAATTY	8 cut(s)	66, 122, 303, 407, 547, 935, 1241, 1739
XceI	RCATGY	4 cut(s)	624, 1772, 1979, 2800
XcmI	CCANNNNNNNNNTGG	1 cut(s)	203
XmaJI	CCTAGG	1 cut(s)	1810
XmiI	GTMKAC	1 cut(s)	2010
XmnI	GAANNNNTTC	1 cut(s)	2733
XspI	CTAG	7 cut(s)	6, 263, 653, 918, 1811, 2592, 2824

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.