Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0011327

Physical Location & Seq

Genomic Coordinates Reverse (-)

31171576 .. 31174412

Gene Structure 2837 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0299100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2061 bp

ATGGAAGAGCTGAAGCCAACCCCCGCCAACTCATCCCCGCTCACCCCACTCGGCTTCCTAGACCGAGCCGCCACCGTCTACGGCGACTGCCCTTCTGTCATCTACGAAGACACCACCTACACGTGGAGCCAGACCCACCGTCGATGCCTCCGCGTCGCTTCCTCCATCTCCTCCCTCGGCATCCGACGCGGCCACGTCGTCTCCGTCCTCTCCCCCAACATCCCCGCCATGTACGAGCTCCACTTCGCCGTCCCCATGTCCGGCGCCGTCCTCAACACCATCAACACCCGCCTCGACACCCGCACCGTCTCCCTCCTCCTCCGCCACAGCCAATCCAAGCTCCTCTTCCTCGACCACACCCTCAGCTCCCTCGTCCTCGACGCCCTCCGTCTCTTCCCTCCCAACACCCCCACCCCCCTCCTCGTCCTCATCGCCGACGACGATGCACCCCATCCCAACTCCGACTCATCCCCCTTCTGCGCCACGTACGAGGAAATGGTGGACAGCGGCGATCCGGACTTCCTGTGGGCCCTACCGGAGAATGAGTGGGACCCGATGACGCTGAACTACACTTCCGGCACTACTTCCTCCCCCAAGGGAGTGGTCCACTGCCACAGAGGGCTTTTCATCATCACCGTCAACTCTCTCCTCGACTGGGCCGTACCCAGACAGCCCGTCTATCTCTGGACGCTTCCGATGTTCCACGCCAACGGCTGGAGCTACCCGTACGGGATCGCCGCCGTCGGTGGGACCAACGTTTGCGTCCGCAAATTCGACGCCCATGTCATCTACGACTTGATCAGACGACACGGCGTCACTCACATGTGCGGTGCGCCGGTGGTCCTCAACATGCTGACGAATGTACCGAACAACGAGCCTTTGAGGAACCCGGTCCAGATCATGACCGCCGGAGCTCCGCCGCCCGCGGCGGTTCTGTCTCGGACTGAGTCGCTGGGATTCGTGGTGAGCCATGGGTACGGGTTGACAGAGACGGCAGGGCCGGTGGTGTCGTGCGCGTGGAAGCCCGGGTGGAATAAGTTGCCGGCGACGGAGAGGGCGAGGCTGAAGTCGAGGCAGGGAGTGAGGATGGTGACCATGACCCACGTCGACGTGGTGGATCCGGATACTGGTGCACCGGTTAAACACGACGGTTCATCGCTGGGGGAGGTGGTTTTCAGAGGCGGGTCTGTGATGTTGGGTTACCTGAAAGACCCAAAAGGCACGGCTAGTTGCATGAAAGACGGTTTGTTTTATACCGGCGACGTGGCAGTGATGCACCCGGACGGGTATCTGGAGATCAAGGATCGATCTAAGGACGTGATCATTAGCGGGGGAGAGAACGTGAGCAGCGTGGAGGTCGAGTCGGTTCTCTACACCAACGCGGCGGTGAACGAGGCGGCAGTGGTGGCTAGGCCTGACGAGTTTTGGGGGGAGACGCCGTGCGCGTTTGTGAGCCTGAAAGCTGACGTGGCGCGGAGGCCGACGGAGAAGGAGATAATAGAGTATTGCAGGGGGAAGTTGCCGCATTACATGGTGCCGAAGACGGTGGTGTTTAAGGAGGAGCTGCCGAAGACGTCGACGGGGAAGATTCAGAAGTTCGTGCTGAGAGAGATGGCGGCCCAGTGTTACTTGATTCGCGGGTCGTTGCGGAACGGGTACACGGTACGGAAATGGTTGCTGAACATTTTGCTCATCTACGCCAGATTTTATCTCAAATTCGGATTTGGTGTAGTCAGTTTCCCACTTATGTTCGTCAGCTGTTACACTTTGACCAATTGCCGCTTGAGTTTCTTGCTCTTGCAAATATGGATATATGAGTTTGATATATGTGTTCCTGGCCGAATCGGTTGTGCATTGGGACTGGGTGGAATAGGTCTACTCGAAGTATTCTTGGTACGCAATCAGGGGCGGAACTATATTCATGCTCTTAATCCAGAATCAACGGAAATAGATGAGTCGCCTTTAAGATTGAAGGACTTGCGAAGGAGAATGTTAGATGGAAACTATGTAGATGAGGAAGATTCATTGCGTACAATGGCGGAACCAGGATTTAAACCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC1 APH

Protein Analysis

686

Amino Acids

75.99

Weight (kDa)

6.66

Isoelectric Point (pI)

42.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AMP-binding	PF00501	21 - 402	1.5e-75	AMP-binding enzyme
AMP-binding_C	PF13193	452 - 529	5.6e-24	AMP-binding enzyme C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011327)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24190
fragaria_vesca	FvH4_4g00270 FvH4_4g00270 FvH4_4g00270
malus_domestica	MD04G1002700.v1.1
prunus_persica	Prupe.1G002700_v2.0.a1 Prupe.1G002700_v2.0.a1 Prupe.1G002700_v2.0.a1 Prupe.1G002700_v2.0.a1 Prupe.1G002700_v2.0.a1 Prupe.1G002700_v2.0.a1
pyrus_communis	pycom04g00280
rosa_chinensis	RchiOBHm_Chr4g0385111
rosa_multiflora	Rmu_ssc0000158.1_g000037
rosa_roxburghii	Rroxscaffold_5G00333020
rosa_rugosa	Rorug03G0299100
rosa_samantha	Rh4BG002200 Rh4CG003000 Rh4DG002500
rosa_wichuraiana	Rw4G000660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	782
AatII	GACGTC	1 cut(s)	1577
AccB1I	GGYRCC	2 cut(s)	263, 1534
AccB7I	CCANNNNNTGG	1 cut(s)	714
AccBSI	CCGCTC	1 cut(s)	40
AccI	GTMKAC	4 cut(s)	78, 1107, 1577, 1876
AccII	CGCG	8 cut(s)	153, 189, 926, 1016, 1382, 1445, 1474, 1638
AccIII	TCCGGA	2 cut(s)	514, 1120
AclI	AACGTT	1 cut(s)	756
AclWI	GGATC	5 cut(s)	506, 740, 1112, 1125, 1311
AcoI	YGGCCR	2 cut(s)	190, 1837
AcsI	RAATTY	2 cut(s)	770, 1715
AcuI	CTGAAG	2 cut(s)	32, 1085
AcvI	CACGTG	1 cut(s)	123
AcyI	GRCGYC	6 cut(s)	264, 381, 777, 813, 1436, 1574
AfiI	CCNNNNNNNGG	6 cut(s)	123, 260, 655, 714, 747, 1127
AflIII	ACRYGT	2 cut(s)	120, 822
AgeI	ACCGGT	1 cut(s)	1135
AgsI	TTSAA	1 cut(s)	1972
AhdI	GACNNNNNGTC	3 cut(s)	138, 674, 812
AjiI	CACGTC	6 cut(s)	196, 1105, 1111, 1264, 1318, 1468
AjnI	CCWGG	2 cut(s)	1834, 2044
AjuI	GAANNNNNNNTTGG	2 cut(s)	329, 361
AloI	GAACNNNNNNTCC	2 cut(s)	557, 589
AluBI	AGCT	9 cut(s)	10, 238, 340, 366, 720, 914, 1463, 1564, 1758
AluI	AGCT	9 cut(s)	10, 238, 340, 366, 720, 914, 1463, 1564, 1758
Alw21I	GWGCWC	3 cut(s)	240, 916, 1135
Alw26I	GTCTC	6 cut(s)	205, 313, 395, 942, 983, 1427
Alw44I	GTGCAC	1 cut(s)	1131
AlwI	GGATC	5 cut(s)	506, 740, 1112, 1125, 1311
Ama87I	CYCGRG	1 cut(s)	1025
Aor13HI	TCCGGA	2 cut(s)	514, 1120
AoxI	GGCC	8 cut(s)	190, 528, 657, 998, 1412, 1478, 1617, 1837
ApaI	GGGCCC	1 cut(s)	532
ApaLI	GTGCAC	1 cut(s)	1131
ApeKI	GCWGC	2 cut(s)	1347, 1564
ApoI	RAATTY	2 cut(s)	770, 1715
AsiGI	ACCGGT	1 cut(s)	1135
AspLEI	GCGC	6 cut(s)	266, 482, 835, 1016, 1445, 1474
AsuC2I	CCSGG	4 cut(s)	890, 1026, 1027, 1280
AsuHPI	GGTGA	5 cut(s)	34, 625, 976, 1102, 1399
AvaI	CYCGRG	1 cut(s)	1025
AvaII	GGWCC	5 cut(s)	550, 604, 750, 841, 892
BaeGI	GKGCMC	2 cut(s)	532, 1135
BaeI	ACNNNNGTAYC	2 cut(s)	846, 879
BamHI	GGATCC	1 cut(s)	1117
BanI	GGYRCC	2 cut(s)	263, 1534
BanII	GRGCYC	3 cut(s)	240, 532, 916
BbrPI	CACGTG	1 cut(s)	123
BbsI	GAAGAC	3 cut(s)	114, 1547, 1577
Bbv12I	GWGCWC	3 cut(s)	240, 916, 1135
BbvCI	CCTCAGC	1 cut(s)	362
BbvI	GCAGC	2 cut(s)	1359, 1551
BccI	CCATC	6 cut(s)	173, 287, 459, 1081, 1606, 1991
BcgI	CGANNNNNNTGC	2 cut(s)	425, 459
BciT130I	CCWGG	2 cut(s)	1836, 2046
BciVI	GTATCC	1 cut(s)	1117
BclI	TGATCA	2 cut(s)	798, 1320
BcnI	CCSGG	4 cut(s)	890, 1026, 1027, 1280
BcoDI	GTCTC	6 cut(s)	205, 313, 395, 942, 983, 1427
BfaI	CTAG	3 cut(s)	59, 1227, 1410
BfoI	RGCGCY	1 cut(s)	267
BfuI	GTATCC	1 cut(s)	1117
Bme1390I	CCNGG	6 cut(s)	890, 1026, 1027, 1280, 1836, 2046
Bme18I	GGWCC	5 cut(s)	550, 604, 750, 841, 892
BmeRI	GACNNNNNGTC	3 cut(s)	138, 674, 812
BmeT110I	CYCGRG	1 cut(s)	1025
BmgBI	CACGTC	6 cut(s)	196, 1105, 1111, 1264, 1318, 1468
BmrFI	CCNGG	6 cut(s)	890, 1026, 1027, 1280, 1836, 2046
BmrI	ACTGGG	3 cut(s)	664, 1615, 1871
BmsI	GCATC	4 cut(s)	134, 189, 433, 1263
BmuI	ACTGGG	3 cut(s)	664, 1615, 1871
BoxI	GACNNNNGTC	1 cut(s)	1103
BpiI	GAAGAC	3 cut(s)	114, 1547, 1577
BpmI	CTGGAG	2 cut(s)	736, 1313
Bpu10I	CCTNAGC	1 cut(s)	362
BpuEI	CTTGAG	1 cut(s)	1804
BpuMI	CCSGG	4 cut(s)	890, 1026, 1027, 1280
Bsa29I	ATCGAT	1 cut(s)	1306
BsaAI	YACGTR	2 cut(s)	123, 486
BsaHI	GRCGYC	6 cut(s)	264, 381, 777, 813, 1436, 1574
BsaJI	CCNNGG	5 cut(s)	175, 594, 924, 970, 1025
BsaWI	WCCGGW	4 cut(s)	514, 535, 1120, 1135
Bsc4I	CCNNNNNNNGG	6 cut(s)	123, 260, 655, 714, 747, 1127
Bse118I	RCCGGY	5 cut(s)	835, 1000, 1042, 1135, 1256
Bse1I	ACTGG	4 cut(s)	659, 1132, 1621, 1866
Bse3DI	GCAATG	1 cut(s)	2024
BseAI	TCCGGA	2 cut(s)	514, 1120
BseBI	CCWGG	2 cut(s)	1836, 2046
BseCI	ATCGAT	1 cut(s)	1306
BseDI	CCNNGG	5 cut(s)	175, 594, 924, 970, 1025
BseGI	GGATG	6 cut(s)	32, 180, 219, 451, 467, 1092
BseLI	CCNNNNNNNGG	6 cut(s)	123, 260, 655, 714, 747, 1127
BseMI	GCAATG	1 cut(s)	2024
BseMII	CTCAG	3 cut(s)	376, 936, 1595
BseNI	ACTGG	4 cut(s)	659, 1132, 1621, 1866
BseRI	GAGGAG	7 cut(s)	160, 305, 308, 332, 410, 638, 1574
BseSI	GKGCMC	2 cut(s)	532, 1135
BseXI	GCAGC	2 cut(s)	1359, 1551
BseYI	CCCAGC	2 cut(s)	952, 1159
Bsh1236I	CGCG	8 cut(s)	153, 189, 926, 1016, 1382, 1445, 1474, 1638
BshFI	GGCC	8 cut(s)	192, 530, 659, 1000, 1414, 1480, 1619, 1839
BshNI	GGYRCC	2 cut(s)	263, 1534
BshTI	ACCGGT	1 cut(s)	1135
BshVI	ATCGAT	1 cut(s)	1306
BsiHKAI	GWGCWC	3 cut(s)	240, 916, 1135
BsiHKCI	CYCGRG	1 cut(s)	1025
BsiWI	CGTACG	2 cut(s)	486, 726
BslFI	GGGAC	4 cut(s)	236, 563, 763, 1872
BslI	CCNNNNNNNGG	6 cut(s)	123, 260, 655, 714, 747, 1127
BsmAI	GTCTC	6 cut(s)	205, 313, 395, 942, 983, 1427
BsmBI	CGTCTC	5 cut(s)	205, 313, 395, 983, 1427
BsmFI	GGGAC	4 cut(s)	236, 563, 763, 1872
BsnI	GGCC	8 cut(s)	192, 530, 659, 1000, 1414, 1480, 1619, 1839
BsoBI	CYCGRG	1 cut(s)	1025
Bsp120I	GGGCCC	1 cut(s)	528
Bsp1286I	GDGCHC	4 cut(s)	240, 532, 916, 1135
Bsp13I	TCCGGA	2 cut(s)	514, 1120
Bsp143I	GATC	9 cut(s)	511, 732, 798, 897, 1117, 1296, 1303, 1307, 1320
Bsp19I	CCATGG	1 cut(s)	970
BspANI	GGCC	8 cut(s)	192, 530, 659, 1000, 1414, 1480, 1619, 1839
BspCNI	CTCAG	3 cut(s)	375, 937, 1596
BspDI	ATCGAT	1 cut(s)	1306
BspEI	TCCGGA	2 cut(s)	514, 1120
BspFNI	CGCG	8 cut(s)	153, 189, 926, 1016, 1382, 1445, 1474, 1638
BspHI	TCATGA	1 cut(s)	900
BspPI	GGATC	5 cut(s)	506, 740, 1112, 1125, 1311
BspT107I	GGYRCC	2 cut(s)	263, 1534
BsrBI	CCGCTC	1 cut(s)	40
BsrDI	GCAATG	1 cut(s)	2024
BsrFI	RCCGGY	5 cut(s)	835, 1000, 1042, 1135, 1256
BsrI	ACTGG	4 cut(s)	659, 1132, 1621, 1866
BssAI	RCCGGY	5 cut(s)	835, 1000, 1042, 1135, 1256
BssECI	CCNNGG	5 cut(s)	175, 594, 924, 970, 1025
BssMI	GATC	9 cut(s)	511, 732, 798, 897, 1117, 1296, 1303, 1307, 1320
BssNI	GRCGYC	6 cut(s)	264, 381, 777, 813, 1436, 1574
BssT1I	CCWWGG	2 cut(s)	594, 970
Bst2UI	CCWGG	2 cut(s)	1836, 2046
Bst4CI	ACNGT	8 cut(s)	76, 140, 307, 637, 1151, 1244, 1546, 1663
Bst6I	CTCTTC	2 cut(s)	350, 398
BstACI	GRCGYC	6 cut(s)	264, 381, 777, 813, 1436, 1574
BstBAI	YACGTR	2 cut(s)	123, 486
BstC8I	GCNNGC	2 cut(s)	924, 1044
BstDEI	CTNAG	4 cut(s)	362, 945, 1311, 1604
BstDSI	CCRYGG	2 cut(s)	924, 970
BstEII	GGTNACC	2 cut(s)	1090, 1199
BstF5I	GGATG	6 cut(s)	32, 180, 219, 451, 467, 1092
BstFNI	CGCG	8 cut(s)	153, 189, 926, 1016, 1382, 1445, 1474, 1638
BstH2I	RGCGCY	1 cut(s)	267
BstHHI	GCGC	6 cut(s)	266, 482, 835, 1016, 1445, 1474
BstKTI	GATC	9 cut(s)	514, 735, 801, 900, 1120, 1299, 1306, 1310, 1323
BstMAI	GTCTC	6 cut(s)	205, 313, 395, 942, 983, 1427
BstMBI	GATC	9 cut(s)	511, 732, 798, 897, 1117, 1296, 1303, 1307, 1320
BstMWI	GCNNNNNNNGC	3 cut(s)	186, 1406, 1469
BstNI	CCWGG	2 cut(s)	1836, 2046
BstNSI	RCATGY	2 cut(s)	826, 853
BstPAI	GACNNNNGTC	1 cut(s)	1103
BstPI	GGTNACC	2 cut(s)	1090, 1199
BstSCI	CCNGG	6 cut(s)	888, 1024, 1025, 1278, 1834, 2044
BstSLI	GKGCMC	2 cut(s)	532, 1135
BstUI	CGCG	8 cut(s)	153, 189, 926, 1016, 1382, 1445, 1474, 1638
BstV1I	GCAGC	2 cut(s)	1359, 1551
BstV2I	GAAGAC	3 cut(s)	114, 1547, 1577
BstX2I	RGATCY	1 cut(s)	1117
BstXI	CCANNNNNNTGG	1 cut(s)	601
BstYI	RGATCY	1 cut(s)	1117
Bsu15I	ATCGAT	1 cut(s)	1306
BsuI	GTATCC	1 cut(s)	1117
BsuRI	GGCC	8 cut(s)	192, 530, 659, 1000, 1414, 1480, 1619, 1839
BsuTUI	ATCGAT	1 cut(s)	1306
BtgI	CCRYGG	2 cut(s)	924, 970
BtgZI	GCGATG	2 cut(s)	415, 1140
BtrI	CACGTC	6 cut(s)	196, 1105, 1111, 1264, 1318, 1468
BtsCI	GGATG	6 cut(s)	32, 180, 219, 451, 467, 1092
BtsI	GCAGTG	3 cut(s)	607, 1275, 1407
BtsIMutI	CAGTG	4 cut(s)	607, 1275, 1407, 1628
Cac8I	GCNNGC	2 cut(s)	924, 1044
CciI	TCATGA	1 cut(s)	900
CfoI	GCGC	6 cut(s)	266, 482, 835, 1016, 1445, 1474
Cfr10I	RCCGGY	5 cut(s)	835, 1000, 1042, 1135, 1256
Cfr42I	CCGCGG	1 cut(s)	927
Cfr9I	CCCGGG	1 cut(s)	1025
ClaI	ATCGAT	1 cut(s)	1306
CseI	GACGC	9 cut(s)	142, 195, 389, 568, 697, 751, 785, 802, 1444
CspAI	ACCGGT	1 cut(s)	1135
DdeI	CTNAG	4 cut(s)	362, 945, 1311, 1604
DinI	GGCGCC	1 cut(s)	265
DpnI	GATC	9 cut(s)	513, 734, 800, 899, 1119, 1298, 1305, 1309, 1322
DpnII	GATC	9 cut(s)	511, 732, 798, 897, 1117, 1296, 1303, 1307, 1320
DraI	TTTAAA	1 cut(s)	2053
DrdI	GACNNNNNNGTC	1 cut(s)	782
DriI	GACNNNNNGTC	3 cut(s)	138, 674, 812
DseDI	GACNNNNNNGTC	1 cut(s)	782
EaeI	YGGCCR	2 cut(s)	190, 1837
Eam1104I	CTCTTC	2 cut(s)	350, 398
Eam1105I	GACNNNNNGTC	3 cut(s)	138, 674, 812
EarI	CTCTTC	2 cut(s)	350, 398
EciI	GGCGGA	4 cut(s)	311, 906, 1924, 2054
Ecl136II	GAGCTC	2 cut(s)	238, 914
Eco130I	CCWWGG	2 cut(s)	594, 970
Eco147I	AGGCCT	1 cut(s)	1414
Eco24I	GRGCYC	3 cut(s)	240, 532, 916
Eco47I	GGWCC	5 cut(s)	550, 604, 750, 841, 892
Eco53kI	GAGCTC	2 cut(s)	238, 914
Eco57I	CTGAAG	2 cut(s)	32, 1085
Eco72I	CACGTG	1 cut(s)	123
Eco88I	CYCGRG	1 cut(s)	1025
Eco91I	GGTNACC	2 cut(s)	1090, 1199
EcoICRI	GAGCTC	2 cut(s)	238, 914
EcoO109I	RGGNCCY	2 cut(s)	529, 550
EcoO65I	GGTNACC	2 cut(s)	1090, 1199
EcoRII	CCWGG	2 cut(s)	1834, 2044
EcoT14I	CCWWGG	2 cut(s)	594, 970
EcoT38I	GRGCYC	3 cut(s)	240, 532, 916
EgeI	GGCGCC	1 cut(s)	265
EheI	GGCGCC	1 cut(s)	265
ErhI	CCWWGG	2 cut(s)	594, 970
Esp3I	CGTCTC	5 cut(s)	205, 313, 395, 983, 1427
FalI	AAGNNNNNCTT	2 cut(s)	329, 361
FaqI	GGGAC	4 cut(s)	236, 563, 763, 1872
FauI	CCCGC	9 cut(s)	31, 45, 232, 296, 308, 931, 1175, 1322, 1631
FbaI	TGATCA	2 cut(s)	798, 1320
FblI	GTMKAC	4 cut(s)	78, 1107, 1577, 1876
FokI	GGATG	6 cut(s)	19, 167, 206, 438, 454, 1099
FriOI	GRGCYC	3 cut(s)	240, 532, 916
FspBI	CTAG	3 cut(s)	59, 1227, 1410
GlaI	GCGC	6 cut(s)	265, 481, 834, 1015, 1444, 1473
GsaI	CCCAGC	2 cut(s)	956, 1163
GsuI	CTGGAG	2 cut(s)	736, 1313
HaeII	RGCGCY	1 cut(s)	267
HaeIII	GGCC	8 cut(s)	192, 530, 659, 1000, 1414, 1480, 1619, 1839
HgaI	GACGC	9 cut(s)	142, 195, 389, 568, 697, 751, 785, 802, 1444
HhaI	GCGC	6 cut(s)	266, 482, 835, 1016, 1445, 1474
Hin1I	GRCGYC	6 cut(s)	264, 381, 777, 813, 1436, 1574
Hin6I	GCGC	6 cut(s)	264, 480, 833, 1014, 1443, 1472
HinP1I	GCGC	6 cut(s)	264, 480, 833, 1014, 1443, 1472
HincII	GTYRAC	4 cut(s)	640, 984, 1108, 1578
HindII	GTYRAC	4 cut(s)	640, 984, 1108, 1578
HphI	GGTGA	5 cut(s)	34, 625, 976, 1102, 1399
Hpy188I	TCNGA	8 cut(s)	185, 463, 696, 803, 942, 1178, 1593, 1721
Hpy188III	TCNNGA	7 cut(s)	515, 685, 895, 901, 1121, 1292, 1934
HpyAV	CCTTC	5 cut(s)	102, 484, 1483, 1966, 1977
HpyCH4III	ACNGT	8 cut(s)	76, 140, 307, 637, 1151, 1244, 1546, 1663
HpyCH4V	TGCA	7 cut(s)	446, 1133, 1233, 1276, 1509, 1801, 1853
HpyF10VI	GCNNNNNNNGC	3 cut(s)	186, 1406, 1469
HpyF3I	CTNAG	4 cut(s)	362, 945, 1311, 1604
Hsp92I	GRCGYC	6 cut(s)	264, 381, 777, 813, 1436, 1574
HspAI	GCGC	6 cut(s)	264, 480, 833, 1014, 1443, 1472
KasI	GGCGCC	1 cut(s)	263
KflI	GGGWCCC	1 cut(s)	550
Kpn2I	TCCGGA	2 cut(s)	514, 1120
KroI	GCCGGC	1 cut(s)	1042
KroNI	GCCGGC	1 cut(s)	1044
Ksp22I	TGATCA	2 cut(s)	798, 1320
KspI	CCGCGG	1 cut(s)	927
Kzo9I	GATC	9 cut(s)	511, 732, 798, 897, 1117, 1296, 1303, 1307, 1320
LmnI	GCTCC	8 cut(s)	126, 243, 345, 371, 717, 911, 919, 1561
Lsp1109I	GCAGC	2 cut(s)	1359, 1551
LweI	GCATC	4 cut(s)	134, 189, 433, 1263
MaeI	CTAG	3 cut(s)	59, 1227, 1410
MaeIII	GTNAC	5 cut(s)	814, 1090, 1199, 1625, 1760
MalI	GATC	9 cut(s)	513, 734, 800, 899, 1119, 1298, 1305, 1309, 1322
MbiI	CCGCTC	1 cut(s)	40
MboI	GATC	9 cut(s)	511, 732, 798, 897, 1117, 1296, 1303, 1307, 1320
MboII	GAAGA	8 cut(s)	17, 119, 337, 385, 1552, 1582, 1597, 2030
MfeI	CAATTG	1 cut(s)	1774
MflI	RGATCY	1 cut(s)	1117
MhlI	GDGCHC	4 cut(s)	240, 532, 916, 1135
MluCI	AATT	3 cut(s)	770, 1715, 1774
Mly113I	GGCGCC	1 cut(s)	264
MlyI	GAGTC	4 cut(s)	458, 956, 1370, 1964
MmeI	TCCRAC	2 cut(s)	208, 486
MroI	TCCGGA	2 cut(s)	514, 1120
MroNI	GCCGGC	1 cut(s)	1042
MseI	TTAA	6 cut(s)	1140, 1554, 1929, 1964, 2052, 2059
MslI	CAYNNNNRTG	1 cut(s)	821
MspA1I	CMGCKG	3 cut(s)	507, 926, 1758
MspR9I	CCNGG	6 cut(s)	890, 1026, 1027, 1280, 1836, 2046
MunI	CAATTG	1 cut(s)	1774
MvaI	CCWGG	2 cut(s)	1836, 2046
MvnI	CGCG	8 cut(s)	153, 189, 926, 1016, 1382, 1445, 1474, 1638
MwoI	GCNNNNNNNGC	3 cut(s)	186, 1406, 1469
NaeI	GCCGGC	1 cut(s)	1044
NarI	GGCGCC	1 cut(s)	264
NciI	CCSGG	4 cut(s)	890, 1026, 1027, 1280
NcoI	CCATGG	1 cut(s)	970
NdeII	GATC	9 cut(s)	511, 732, 798, 897, 1117, 1296, 1303, 1307, 1320
NgoMIV	GCCGGC	1 cut(s)	1042
NmeAIII	GCCGAG	2 cut(s)	30, 156
NmuCI	GTSAC	2 cut(s)	814, 1090
NspI	RCATGY	2 cut(s)	826, 853
PagI	TCATGA	1 cut(s)	900
PceI	AGGCCT	1 cut(s)	1414
PciI	ACATGT	1 cut(s)	822
PcsI	WCGNNNNNNNCGW	7 cut(s)	201, 438, 657, 863, 1055, 1347, 1442
PdiI	GCCGGC	1 cut(s)	1044
PfeI	GAWTC	6 cut(s)	957, 1588, 1633, 1842, 1937, 2021
Pfl23II	CGTACG	2 cut(s)	486, 726
PflFI	GACNNNGTC	1 cut(s)	946
PflMI	CCANNNNNTGG	1 cut(s)	714
PinAI	ACCGGT	1 cut(s)	1135
PleI	GAGTC	4 cut(s)	458, 955, 1369, 1963
PluTI	GGCGCC	1 cut(s)	267
PmaCI	CACGTG	1 cut(s)	123
PmlI	CACGTG	1 cut(s)	123
PpsI	GAGTC	4 cut(s)	458, 955, 1369, 1963
Ppu21I	YACGTR	2 cut(s)	123, 486
PpuMI	RGGWCCY	1 cut(s)	550
PscI	ACATGT	1 cut(s)	822
PshAI	GACNNNNGTC	1 cut(s)	1103
Psp124BI	GAGCTC	2 cut(s)	240, 916
Psp1406I	AACGTT	1 cut(s)	756
Psp5II	RGGWCCY	1 cut(s)	550
Psp6I	CCWGG	2 cut(s)	1834, 2044
PspCI	CACGTG	1 cut(s)	123
PspEI	GGTNACC	2 cut(s)	1090, 1199
PspFI	CCCAGC	2 cut(s)	952, 1159
PspGI	CCWGG	2 cut(s)	1834, 2044
PspLI	CGTACG	2 cut(s)	486, 726
PspOMI	GGGCCC	1 cut(s)	528
PspPPI	RGGWCCY	1 cut(s)	550
PsuI	RGATCY	1 cut(s)	1117
PsyI	GACNNNGTC	1 cut(s)	946
PvuII	CAGCTG	1 cut(s)	1758
RseI	CAYNNNNRTG	1 cut(s)	821
SacI	GAGCTC	2 cut(s)	240, 916
SacII	CCGCGG	1 cut(s)	927
SalI	GTCGAC	2 cut(s)	1106, 1576
SaqAI	TTAA	6 cut(s)	1140, 1554, 1929, 1964, 2052, 2059
Sau3AI	GATC	9 cut(s)	511, 732, 798, 897, 1117, 1296, 1303, 1307, 1320
SchI	GAGTC	4 cut(s)	458, 956, 1370, 1964
ScrFI	CCNGG	6 cut(s)	890, 1026, 1027, 1280, 1836, 2046
SduI	GDGCHC	4 cut(s)	240, 532, 916, 1135
SfaNI	GCATC	4 cut(s)	134, 189, 433, 1263
SfoI	GGCGCC	1 cut(s)	265
Sfr303I	CCGCGG	1 cut(s)	927
SgrAI	CRCCGGYG	1 cut(s)	835
SgrBI	CCGCGG	1 cut(s)	927
SgrDI	CGTCGACG	2 cut(s)	1106, 1576
SinI	GGWCC	5 cut(s)	550, 604, 750, 841, 892
SmaI	CCCGGG	1 cut(s)	1027
SmiMI	CAYNNNNRTG	1 cut(s)	821
SmlI	CTYRAG	1 cut(s)	1783
SmoI	CTYRAG	1 cut(s)	1783
Sse9I	AATT	3 cut(s)	770, 1715, 1774
SseBI	AGGCCT	1 cut(s)	1414
SspDI	GGCGCC	1 cut(s)	263
SspMI	CTAG	3 cut(s)	59, 1227, 1410
SstI	GAGCTC	2 cut(s)	240, 916
StuI	AGGCCT	1 cut(s)	1414
StyD4I	CCNGG	6 cut(s)	888, 1024, 1025, 1278, 1834, 2044
StyI	CCWWGG	2 cut(s)	594, 970
TaaI	ACNGT	8 cut(s)	76, 140, 307, 637, 1151, 1244, 1546, 1663
TaqII	GACCGA	1 cut(s)	78
TasI	AATT	3 cut(s)	770, 1715, 1774
TfiI	GAWTC	6 cut(s)	957, 1588, 1633, 1842, 1937, 2021
Tru1I	TTAA	6 cut(s)	1140, 1554, 1929, 1964, 2052, 2059
Tru9I	TTAA	6 cut(s)	1140, 1554, 1929, 1964, 2052, 2059
TscAI	CASTG	4 cut(s)	614, 1275, 1407, 1628
TseFI	GTSAC	2 cut(s)	814, 1090
TseI	GCWGC	2 cut(s)	1347, 1564
Tsp45I	GTSAC	2 cut(s)	814, 1090
TspDTI	ATGAA	5 cut(s)	616, 1143, 1250, 1910, 2013
TspGWI	ACGGA	6 cut(s)	193, 377, 1064, 1499, 1681, 1958
TspMI	CCCGGG	1 cut(s)	1025
TspRI	CASTG	4 cut(s)	614, 1275, 1407, 1628
Tth111I	GACNNNGTC	1 cut(s)	946
Van91I	CCANNNNNTGG	1 cut(s)	714
VneI	GTGCAC	1 cut(s)	1131
VpaK11BI	GGWCC	5 cut(s)	550, 604, 750, 841, 892
XapI	RAATTY	2 cut(s)	770, 1715
XceI	RCATGY	2 cut(s)	826, 853
XmaI	CCCGGG	1 cut(s)	1025
XmiI	GTMKAC	4 cut(s)	78, 1107, 1577, 1876
XspI	CTAG	3 cut(s)	59, 1227, 1410
ZraI	GACGTC	1 cut(s)	1575

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.