Rorug04G0171000

acyl-CoA-binding domain-containing protein

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
Physical Location & Seq
Forward (+)
30124580 .. 30132403
7824 bp
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UTR
Exon/CDS
Intron
Rorug04G0171000.1

Sequence Viewer

Length: 417 bp
ATGAGGATTCGCTCGGGACATCCTTTTTGTTCGGGTGCCACTTTAGCCAAACTTGCTGCTGTTACGATGGATGAGGAAGGGAATGAAACATTTGATACCAGTGGTGCTCTTGATAAGTTGCGAAAGTCGTTGCAACTAGAGAGACTTGCTATGTATCATGATTCTGATAGTGTACTGTGGAAGATAGATAAGGGATGGGAGGATCTTACTCCAAAGGAATGGGTCGAGATTTTTGAAGATGGAATACGTGAACCTGTGGATGACCATGCAATGGTGTGCAAGTGGGCTATGAATCGCGAGTATTTGGTCTCACCTATAAATGGAGTTTTAAAGTATCACCGTGTAGGAAACCAAGAAAGAAATGATCCAGAGGTTCCATTTGAGAACGCTTCCCTTGCCCTAAGTGACGTTTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

138

Amino Acids

15.68

Weight (kDa)

4.86

Isoelectric Point (pI)

31.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0010980)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 35
AccB7I CCANNNNNTGG 1 cut(s) 271
AccII CGCG 1 cut(s) 297
AclWI GGATC 2 cut(s) 210, 359
AfaI GTAC 1 cut(s) 174
AfiI CCNNNNNNNGG 2 cut(s) 271, 320
AgsI TTSAA 1 cut(s) 236
Alw21I GWGCWC 1 cut(s) 109
Alw26I GTCTC 2 cut(s) 136, 313
AlwI GGATC 2 cut(s) 210, 359
Ama87I CYCGRG 1 cut(s) 13
ApeKI GCWGC 1 cut(s) 56
ArsI GACNNNNNNTTYG 2 cut(s) 9, 41
AsuHPI GGTGA 2 cut(s) 303, 329
AvaI CYCGRG 1 cut(s) 13
BanI GGYRCC 1 cut(s) 35
BarI GAAGNNNNNNTAC 2 cut(s) 228, 260
Bbv12I GWGCWC 1 cut(s) 109
BbvI GCAGC 1 cut(s) 43
BccI CCATC 3 cut(s) 61, 189, 233
BcoDI GTCTC 2 cut(s) 136, 313
BfaI CTAG 1 cut(s) 137
BisI GCNGC 1 cut(s) 57
BlsI GCNGC 1 cut(s) 58
BmeT110I CYCGRG 1 cut(s) 13
BmiI GGNNCC 2 cut(s) 37, 375
BsaAI YACGTR 1 cut(s) 248
BsaI GGTCTC 1 cut(s) 313
Bsc4I CCNNNNNNNGG 2 cut(s) 271, 320
Bse1I ACTGG 1 cut(s) 99
Bse3DI GCAATG 1 cut(s) 276
BseGI GGATG 4 cut(s) 19, 76, 200, 265
BseLI CCNNNNNNNGG 2 cut(s) 271, 320
BseMI GCAATG 1 cut(s) 276
BseNI ACTGG 1 cut(s) 99
BseXI GCAGC 1 cut(s) 43
Bsh1236I CGCG 1 cut(s) 297
BshNI GGYRCC 1 cut(s) 35
BsiHKAI GWGCWC 1 cut(s) 109
BsiHKCI CYCGRG 1 cut(s) 13
BslFI GGGAC 1 cut(s) 30
BslI CCNNNNNNNGG 2 cut(s) 271, 320
BsmAI GTCTC 2 cut(s) 136, 313
BsmFI GGGAC 1 cut(s) 30
Bso31I GGTCTC 1 cut(s) 313
BsoBI CYCGRG 1 cut(s) 13
Bsp1286I GDGCHC 1 cut(s) 109
Bsp143I GATC 2 cut(s) 202, 364
Bsp68I TCGCGA 1 cut(s) 297
BspFNI CGCG 1 cut(s) 297
BspHI TCATGA 1 cut(s) 157
BspLI GGNNCC 2 cut(s) 37, 375
BspPI GGATC 2 cut(s) 210, 359
BspT107I GGYRCC 1 cut(s) 35
BspTNI GGTCTC 1 cut(s) 313
BsrDI GCAATG 1 cut(s) 276
BsrI ACTGG 1 cut(s) 99
BssMI GATC 2 cut(s) 202, 364
Bst4CI ACNGT 2 cut(s) 177, 341
BstBAI YACGTR 1 cut(s) 248
BstDEI CTNAG 1 cut(s) 401
BstF5I GGATG 4 cut(s) 19, 76, 200, 265
BstFNI CGCG 1 cut(s) 297
BstKTI GATC 2 cut(s) 205, 367
BstMAI GTCTC 2 cut(s) 136, 313
BstMBI GATC 2 cut(s) 202, 364
BstMWI GCNNNNNNNGC 3 cut(s) 44, 53, 395
BstUI CGCG 1 cut(s) 297
BstV1I GCAGC 1 cut(s) 43
BstX2I RGATCY 1 cut(s) 202
BstXI CCANNNNNNTGG 1 cut(s) 219
BstYI RGATCY 1 cut(s) 202
BtsCI GGATG 4 cut(s) 19, 76, 200, 265
BtsIMutI CAGTG 1 cut(s) 106
BtuMI TCGCGA 1 cut(s) 297
CciI TCATGA 1 cut(s) 157
Csp6I GTAC 1 cut(s) 173
CviAII CATG 2 cut(s) 158, 266
CviJI RGCY 2 cut(s) 47, 287
CviKI_1 RGCY 2 cut(s) 47, 287
CviQI GTAC 1 cut(s) 173
DdeI CTNAG 1 cut(s) 401
DpnI GATC 2 cut(s) 204, 366
DpnII GATC 2 cut(s) 202, 364
DraI TTTAAA 1 cut(s) 330
Eco31I GGTCTC 1 cut(s) 313
Eco88I CYCGRG 1 cut(s) 13
FaeI CATG 2 cut(s) 161, 269
FaiI YATR 5 cut(s) 152, 159, 267, 290, 317
FaqI GGGAC 1 cut(s) 30
FatI CATG 2 cut(s) 157, 265
Fnu4HI GCNGC 1 cut(s) 57
FokI GGATG 4 cut(s) 6, 83, 207, 272
Fsp4HI GCNGC 1 cut(s) 57
FspBI CTAG 1 cut(s) 137
GluI GCNGC 1 cut(s) 57
Hin1II CATG 2 cut(s) 161, 269
HinfI GANTC 3 cut(s) 7, 161, 292
HphI GGTGA 2 cut(s) 303, 329
Hpy166II GTNNAC 2 cut(s) 173, 251
Hpy188I TCNGA 1 cut(s) 166
Hpy188III TCNNGA 7 cut(s) 15, 110, 158, 226, 296, 368, 414
Hpy8I GTNNAC 2 cut(s) 173, 251
HpyAV CCTTC 1 cut(s) 71
HpyCH4III ACNGT 2 cut(s) 177, 341
HpyCH4IV ACGT 2 cut(s) 247, 408
HpyCH4V TGCA 3 cut(s) 133, 269, 279
HpyF10VI GCNNNNNNNGC 3 cut(s) 44, 53, 395
HpyF3I CTNAG 1 cut(s) 401
HpySE526I ACGT 2 cut(s) 247, 408
Hsp92II CATG 2 cut(s) 161, 269
Kzo9I GATC 2 cut(s) 202, 364
LpnPI CCDG 3 cut(s) 112, 267, 381
Lsp1109I GCAGC 1 cut(s) 43
MaeI CTAG 1 cut(s) 137
MaeII ACGT 2 cut(s) 247, 408
MaeIII GTNAC 2 cut(s) 61, 404
MalI GATC 2 cut(s) 204, 366
MboI GATC 2 cut(s) 202, 364
MboII GAAGA 2 cut(s) 193, 248
MflI RGATCY 1 cut(s) 202
MhlI GDGCHC 1 cut(s) 109
MnlI CCTC 3 cut(s) 67, 193, 364
MseI TTAA 1 cut(s) 329
MvnI CGCG 1 cut(s) 297
MwoI GCNNNNNNNGC 3 cut(s) 44, 53, 395
NdeII GATC 2 cut(s) 202, 364
NlaIII CATG 2 cut(s) 161, 269
NlaIV GGNNCC 2 cut(s) 37, 375
NmuCI GTSAC 1 cut(s) 404
NruI TCGCGA 1 cut(s) 297
PagI TCATGA 1 cut(s) 157
PfeI GAWTC 3 cut(s) 7, 161, 292
PflMI CCANNNNNTGG 1 cut(s) 271
PkrI GCNGC 1 cut(s) 58
Ppu21I YACGTR 1 cut(s) 248
PspN4I GGNNCC 2 cut(s) 37, 375
PsuI RGATCY 1 cut(s) 202
RruI TCGCGA 1 cut(s) 297
RsaI GTAC 1 cut(s) 174
RsaNI GTAC 1 cut(s) 173
SaqAI TTAA 1 cut(s) 329
SatI GCNGC 1 cut(s) 57
Sau3AI GATC 2 cut(s) 202, 364
SduI GDGCHC 1 cut(s) 109
SetI ASST 5 cut(s) 250, 256, 316, 375, 411
SspMI CTAG 1 cut(s) 137
TaaI ACNGT 2 cut(s) 177, 341
TaiI ACGT 2 cut(s) 250, 411
TaqI TCGA 1 cut(s) 225
TatI WGTACW 1 cut(s) 172
TfiI GAWTC 3 cut(s) 7, 161, 292
Tru1I TTAA 1 cut(s) 329
Tru9I TTAA 1 cut(s) 329
TscAI CASTG 1 cut(s) 106
TseFI GTSAC 1 cut(s) 404
TseI GCWGC 1 cut(s) 56
Tsp45I GTSAC 1 cut(s) 404
TspDTI ATGAA 2 cut(s) 99, 305
TspRI CASTG 1 cut(s) 106
Van91I CCANNNNNTGG 1 cut(s) 271
XspI CTAG 1 cut(s) 137
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.