Rorug05G0046100

Lipolytic acyl hydrolase (LAH)

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Reverse (-)
4023793 .. 4024653
861 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0046100.1

Sequence Viewer

Length: 729 bp
ATGGCACGGTTGTTTATTGGATTTTGTTTTGCGGGTTCTTCTATACCTCGTAACAAGTCAAAAACTAATTCAAGTTCTGGCCTTCCAATCAATAAGAACTCGCACAATAATAGAGCTGCAGTACCACTCAGTGAACCGGGCGAAAAACATGAGTACATTATGAACACACTAATAGAACCTTTGTTCCGGGAAGGGTTGAGGAACTCTGAGAGAAACGATTGGAGGCAGCTAATCGAGAGGGTCCTGAAGGTTGAGAATACACCGGAAAAGGTATCTCGGTTTGAAGAACAGGTGCAGGCACAAGAAGATAGCCAAACAGGGCCATGTAGCCTGGCCAACCTTGATGTGCTTTGGAGGTTCTATGGCGCACCCGTGTCATGCTCACTTGCCTCGAAAGGCTTTATTCCAACCCTGCAGCTATGCGATTCAGATGAATGTGGCCTGTGTTCGGTTCTAAGACATGAGAAGAGAGGGATTTGTACTACATCGAGCAGTATGGCACTAGAGTATATTGGAGATGTTACGGTTAGGAAGGCTGTAATATTGTGCAAAGTGGTTCCAGGGAGGATAGACTTGACTAACTCGGAGAAAGAACATGATCCATTGAGTTGCTTTAATCCAAGTCACAATAGGAAGGCTACGGTTTTATACGTGAGAAACAGCAGTGCTCTTCTACCTAAGTATGTGGTACTGTTCAAAAGAAAACAATGTGGTAATTGGCAAAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

242

Amino Acids

27.18

Weight (kDa)

8.91

Isoelectric Point (pI)

51.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015572)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 32
AclWI GGATC 1 cut(s) 593
AcoI YGGCCR 1 cut(s) 333
AcuI CTGAAG 1 cut(s) 266
AdeI CACNNNGTG 1 cut(s) 131
AfaI GTAC 4 cut(s) 123, 155, 481, 690
AfiI CCNNNNNNNGG 1 cut(s) 448
AgsI TTSAA 3 cut(s) 72, 284, 697
AjnI CCWGG 2 cut(s) 330, 559
AloI GAACNNNNNNTCC 2 cut(s) 168, 200
AluBI AGCT 3 cut(s) 116, 229, 418
AluI AGCT 3 cut(s) 116, 229, 418
Alw21I GWGCWC 1 cut(s) 670
AlwI GGATC 1 cut(s) 593
AoxI GGCC 4 cut(s) 79, 320, 333, 439
ApeKI GCWGC 3 cut(s) 116, 226, 415
AspLEI GCGC 1 cut(s) 368
AspS9I GGNCC 2 cut(s) 241, 320
AsuC2I CCSGG 2 cut(s) 138, 188
AvaII GGWCC 1 cut(s) 241
BalI TGGCCA 1 cut(s) 335
Bbv12I GWGCWC 1 cut(s) 670
BbvI GCAGC 3 cut(s) 103, 238, 427
BciT130I CCWGG 2 cut(s) 332, 561
BcnI CCSGG 2 cut(s) 138, 188
BfaI CTAG 1 cut(s) 503
BfmI CTRYAG 2 cut(s) 117, 413
BisI GCNGC 3 cut(s) 117, 227, 416
BlsI GCNGC 3 cut(s) 118, 228, 417
Bme1390I CCNGG 4 cut(s) 138, 188, 332, 561
Bme18I GGWCC 1 cut(s) 241
BmgT120I GGNCC 2 cut(s) 241, 320
BmiI GGNNCC 2 cut(s) 242, 558
BmrFI CCNGG 4 cut(s) 138, 188, 332, 561
BpuMI CCSGG 2 cut(s) 138, 188
BsaAI YACGTR 1 cut(s) 652
BsaJI CCNNGG 1 cut(s) 560
BsaWI WCCGGW 1 cut(s) 262
Bsc4I CCNNNNNNNGG 1 cut(s) 448
BseBI CCWGG 2 cut(s) 332, 561
BseDI CCNNGG 1 cut(s) 560
BseLI CCNNNNNNNGG 1 cut(s) 448
BseMII CTCAG 2 cut(s) 142, 198
BseXI GCAGC 3 cut(s) 103, 238, 427
BsgI GTGCAG 1 cut(s) 314
BshFI GGCC 4 cut(s) 81, 322, 335, 441
BsiHKAI GWGCWC 1 cut(s) 670
BsiSI CCGG 3 cut(s) 137, 187, 263
BslI CCNNNNNNNGG 1 cut(s) 448
BsnI GGCC 4 cut(s) 81, 322, 335, 441
Bsp1286I GDGCHC 1 cut(s) 670
Bsp143I GATC 1 cut(s) 598
BspACI CCGC 1 cut(s) 32
BspANI GGCC 4 cut(s) 81, 322, 335, 441
BspCNI CTCAG 2 cut(s) 141, 199
BspLI GGNNCC 2 cut(s) 242, 558
BspMAI CTGCAG 2 cut(s) 121, 417
BspPI GGATC 1 cut(s) 593
BspQI GCTCTTC 1 cut(s) 675
BssECI CCNNGG 1 cut(s) 560
BssMI GATC 1 cut(s) 598
Bst2UI CCWGG 2 cut(s) 332, 561
Bst4CI ACNGT 4 cut(s) 9, 526, 643, 693
Bst6I CTCTTC 2 cut(s) 461, 675
BstBAI YACGTR 1 cut(s) 652
BstC8I GCNNGC 1 cut(s) 297
BstDEI CTNAG 4 cut(s) 128, 207, 455, 678
BstHHI GCGC 1 cut(s) 368
BstKTI GATC 1 cut(s) 601
BstMBI GATC 1 cut(s) 598
BstNI CCWGG 2 cut(s) 332, 561
BstSCI CCNGG 4 cut(s) 136, 186, 330, 559
BstSFI CTRYAG 2 cut(s) 117, 413
BstV1I GCAGC 3 cut(s) 103, 238, 427
BsuRI GGCC 4 cut(s) 81, 322, 335, 441
BtsI GCAGTG 1 cut(s) 670
BtsIMutI CAGTG 2 cut(s) 136, 670
Cac8I GCNNGC 1 cut(s) 297
CfoI GCGC 1 cut(s) 368
Cfr13I GGNCC 2 cut(s) 241, 320
Csp6I GTAC 4 cut(s) 122, 154, 480, 689
CviAII CATG 5 cut(s) 149, 324, 378, 461, 596
CviQI GTAC 4 cut(s) 122, 154, 480, 689
DdeI CTNAG 4 cut(s) 128, 207, 455, 678
DpnI GATC 1 cut(s) 600
DpnII GATC 1 cut(s) 598
DraIII CACNNNGTG 1 cut(s) 131
EaeI YGGCCR 1 cut(s) 333
Eam1104I CTCTTC 2 cut(s) 461, 675
EarI CTCTTC 2 cut(s) 461, 675
Eco47I GGWCC 1 cut(s) 241
Eco57I CTGAAG 1 cut(s) 266
EcoO109I RGGNCCY 1 cut(s) 241
EcoRII CCWGG 2 cut(s) 330, 559
FaeI CATG 5 cut(s) 152, 327, 381, 464, 599
FatI CATG 5 cut(s) 148, 323, 377, 460, 595
FauI CCCGC 1 cut(s) 25
Fnu4HI GCNGC 3 cut(s) 117, 227, 416
Fsp4HI GCNGC 3 cut(s) 117, 227, 416
FspBI CTAG 1 cut(s) 503
GlaI GCGC 1 cut(s) 367
GluI GCNGC 3 cut(s) 117, 227, 416
HaeIII GGCC 4 cut(s) 81, 322, 335, 441
HapII CCGG 3 cut(s) 137, 187, 263
HhaI GCGC 1 cut(s) 368
Hin1II CATG 5 cut(s) 152, 327, 381, 464, 599
Hin6I GCGC 1 cut(s) 366
HinP1I GCGC 1 cut(s) 366
HinfI GANTC 1 cut(s) 425
HpaII CCGG 3 cut(s) 137, 187, 263
Hpy166II GTNNAC 1 cut(s) 134
Hpy188I TCNGA 3 cut(s) 208, 430, 586
Hpy188III TCNNGA 2 cut(s) 235, 244
Hpy8I GTNNAC 1 cut(s) 134
HpyAV CCTTC 5 cut(s) 92, 185, 241, 526, 628
HpyCH4III ACNGT 4 cut(s) 9, 526, 643, 693
HpyCH4IV ACGT 1 cut(s) 651
HpyCH4V TGCA 4 cut(s) 119, 295, 415, 549
HpyF3I CTNAG 4 cut(s) 128, 207, 455, 678
HpySE526I ACGT 1 cut(s) 651
Hsp92II CATG 5 cut(s) 152, 327, 381, 464, 599
HspAI GCGC 1 cut(s) 366
Kzo9I GATC 1 cut(s) 598
LguI GCTCTTC 1 cut(s) 675
Lsp1109I GCAGC 3 cut(s) 103, 238, 427
MaeI CTAG 1 cut(s) 503
MaeII ACGT 1 cut(s) 651
MaeIII GTNAC 3 cut(s) 50, 520, 623
MalI GATC 1 cut(s) 600
MboI GATC 1 cut(s) 598
MboII GAAGA 5 cut(s) 30, 296, 317, 478, 662
MhlI GDGCHC 1 cut(s) 670
MlsI TGGCCA 1 cut(s) 335
MluCI AATT 3 cut(s) 67, 715, 724
MluNI TGGCCA 1 cut(s) 335
MmeI TCCRAC 1 cut(s) 431
MnlI CCTC 8 cut(s) 57, 192, 216, 231, 348, 400, 464, 558
Mox20I TGGCCA 1 cut(s) 335
MscI TGGCCA 1 cut(s) 335
MseI TTAA 1 cut(s) 615
Msp20I TGGCCA 1 cut(s) 335
MspI CCGG 3 cut(s) 137, 187, 263
MspR9I CCNGG 4 cut(s) 138, 188, 332, 561
MvaI CCWGG 2 cut(s) 332, 561
NciI CCSGG 2 cut(s) 138, 188
NdeII GATC 1 cut(s) 598
NlaIII CATG 5 cut(s) 152, 327, 381, 464, 599
NlaIV GGNNCC 2 cut(s) 242, 558
NmuCI GTSAC 1 cut(s) 623
PciSI GCTCTTC 1 cut(s) 675
PfeI GAWTC 1 cut(s) 425
PfoI TCCNGGA 1 cut(s) 186
PkrI GCNGC 3 cut(s) 118, 228, 417
Ppu21I YACGTR 1 cut(s) 652
PpuMI RGGWCCY 1 cut(s) 241
Psp5II RGGWCCY 1 cut(s) 241
Psp6I CCWGG 2 cut(s) 330, 559
PspGI CCWGG 2 cut(s) 330, 559
PspN4I GGNNCC 2 cut(s) 242, 558
PspPI GGNCC 2 cut(s) 241, 320
PspPPI RGGWCCY 1 cut(s) 241
PstI CTGCAG 2 cut(s) 121, 417
RsaI GTAC 4 cut(s) 123, 155, 481, 690
RsaNI GTAC 4 cut(s) 122, 154, 480, 689
SapI GCTCTTC 1 cut(s) 675
SaqAI TTAA 1 cut(s) 615
SatI GCNGC 3 cut(s) 117, 227, 416
Sau3AI GATC 1 cut(s) 598
Sau96I GGNCC 2 cut(s) 241, 320
ScrFI CCNGG 4 cut(s) 138, 188, 332, 561
SduI GDGCHC 1 cut(s) 670
SfcI CTRYAG 2 cut(s) 117, 413
SinI GGWCC 1 cut(s) 241
Sse9I AATT 3 cut(s) 67, 715, 724
SsiI CCGC 1 cut(s) 32
SspI AATATT 1 cut(s) 543
SspMI CTAG 1 cut(s) 503
StyD4I CCNGG 4 cut(s) 136, 186, 330, 559
TaaI ACNGT 4 cut(s) 9, 526, 643, 693
TaiI ACGT 1 cut(s) 654
TaqI TCGA 3 cut(s) 234, 392, 488
TasI AATT 3 cut(s) 67, 715, 724
TatI WGTACW 2 cut(s) 153, 479
TfiI GAWTC 1 cut(s) 425
Tru1I TTAA 1 cut(s) 615
Tru9I TTAA 1 cut(s) 615
TscAI CASTG 2 cut(s) 136, 670
TseFI GTSAC 1 cut(s) 623
TseI GCWGC 3 cut(s) 116, 226, 415
Tsp45I GTSAC 1 cut(s) 623
TspDTI ATGAA 2 cut(s) 176, 447
TspRI CASTG 2 cut(s) 136, 670
VpaK11BI GGWCC 1 cut(s) 241
XspI CTAG 1 cut(s) 503
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.