Rorug05G0233200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0014697
Physical Location & Seq
Forward (+)
24327939 .. 24328406
468 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0233200.1

Sequence Viewer

Length: 360 bp
ATGCGTTCTCATTGCTTCCTCATGCTCCTTGTTTTCTTTCTTCCTCTCGCACTCGCCGCCACTGGTCCGCCCTCTTCCTCCGATTGGAAGCCTATCAACCCAAGCAGCGAAGTAGCAAAAAAAATCGCAGAAGCCGCAGTCTCCCAGTACAATAAGAATGAGGCAAATAAATTAATTTTACAAAACGTGGTTTCAGGCAGGAGCAGAGAAACATCTTCAGGTCCCCGAGACATCATATTTGAACTCACTCTTGCAGCCAAGAATGAGTCGTTAAGCCGTAACCCGCCTTCAAATTATTGGGCTTCTGTAGTGGTGACTTTTGAAACTGTTATTCAACTCGTCAACTTTAGGAAAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

119

Amino Acids

13.12

Weight (kDa)

9.51

Isoelectric Point (pI)

42.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SQAPI PF16845 40 - 116 8.3e-07 Aspartic acid proteinase inhibitor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014697)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g25790 FvH4_3g25790
malus_domestica MD03G1150600.v1.1 MD11G1170000.v1.1
prunus_persica Prupe.6G137500_v2.0.a1
pyrus_communis pycom03g10470 pycom11g14240
rosa_chinensis RchiOBHm_Chr5g0047011
rosa_laevigata RLG00000034458
rosa_multiflora Rmu_sc0005544.1_g000006
rosa_roxburghii Rroxscaffold_1G00034420
rosa_rugosa Rorug05G0233200
rosa_samantha Rh5AG312400 Rh5BG321500 Rh5CG347700 Rh5DG332400
rosa_wichuraiana Rw5G029200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 57, 68, 135, 284
AcuI CTGAAG 1 cut(s) 201
AfaI GTAC 1 cut(s) 149
AfiI CCNNNNNNNGG 1 cut(s) 84
AgsI TTSAA 4 cut(s) 242, 291, 323, 335
AluBI AGCT 1 cut(s) 356
AluI AGCT 1 cut(s) 356
Alw26I GTCTC 2 cut(s) 145, 222
Ama87I CYCGRG 1 cut(s) 225
ApeKI GCWGC 2 cut(s) 105, 254
ArsI GACNNNNNNTTYG 2 cut(s) 221, 253
AseI ATTAAT 1 cut(s) 173
AspS9I GGNCC 2 cut(s) 65, 221
AsuHPI GGTGA 1 cut(s) 325
AvaI CYCGRG 1 cut(s) 225
AvaII GGWCC 2 cut(s) 65, 221
BarI GAAGNNNNNNTAC 2 cut(s) 271, 303
BbvI GCAGC 2 cut(s) 117, 266
BceAI ACGGC 1 cut(s) 261
BcoDI GTCTC 2 cut(s) 145, 222
BfmI CTRYAG 1 cut(s) 306
BisI GCNGC 4 cut(s) 57, 106, 135, 255
BlsI GCNGC 4 cut(s) 58, 107, 136, 256
Bme18I GGWCC 2 cut(s) 65, 221
BmeT110I CYCGRG 1 cut(s) 225
BmgT120I GGNCC 2 cut(s) 65, 221
BmiI GGNNCC 1 cut(s) 223
BmrI ACTGGG 1 cut(s) 139
BmuI ACTGGG 1 cut(s) 139
Bsc4I CCNNNNNNNGG 1 cut(s) 84
Bse1I ACTGG 2 cut(s) 67, 145
Bse3DI GCAATG 1 cut(s) 10
BseLI CCNNNNNNNGG 1 cut(s) 84
BseMI GCAATG 1 cut(s) 10
BseNI ACTGG 2 cut(s) 67, 145
BseXI GCAGC 2 cut(s) 117, 266
BsiHKCI CYCGRG 1 cut(s) 225
BslFI GGGAC 1 cut(s) 207
BslI CCNNNNNNNGG 1 cut(s) 84
BsmAI GTCTC 2 cut(s) 145, 222
BsmFI GGGAC 1 cut(s) 207
BsoBI CYCGRG 1 cut(s) 225
BspACI CCGC 4 cut(s) 57, 68, 135, 284
BspLI GGNNCC 1 cut(s) 223
BsrDI GCAATG 1 cut(s) 10
BsrI ACTGG 2 cut(s) 67, 145
Bst4CI ACNGT 1 cut(s) 328
Bst6I CTCTTC 1 cut(s) 79
BstMAI GTCTC 2 cut(s) 145, 222
BstMWI GCNNNNNNNGC 2 cut(s) 56, 134
BstSFI CTRYAG 1 cut(s) 306
BstV1I GCAGC 2 cut(s) 117, 266
BtsIMutI CAGTG 1 cut(s) 60
Cfr13I GGNCC 2 cut(s) 65, 221
Csp6I GTAC 1 cut(s) 148
CviAII CATG 1 cut(s) 22
CviJI RGCY 6 cut(s) 91, 134, 257, 276, 302, 356
CviKI_1 RGCY 6 cut(s) 91, 134, 257, 276, 302, 356
CviQI GTAC 1 cut(s) 148
Eam1104I CTCTTC 1 cut(s) 79
EarI CTCTTC 1 cut(s) 79
EciI GGCGGA 1 cut(s) 57
Eco47I GGWCC 2 cut(s) 65, 221
Eco57I CTGAAG 1 cut(s) 201
Eco88I CYCGRG 1 cut(s) 225
EcoO109I RGGNCCY 1 cut(s) 221
FaeI CATG 1 cut(s) 25
FaiI YATR 2 cut(s) 23, 236
FaqI GGGAC 1 cut(s) 207
FatI CATG 1 cut(s) 21
FauI CCCGC 1 cut(s) 291
Fnu4HI GCNGC 4 cut(s) 57, 106, 135, 255
Fsp4HI GCNGC 4 cut(s) 57, 106, 135, 255
GluI GCNGC 4 cut(s) 57, 106, 135, 255
Hin1II CATG 1 cut(s) 25
HincII GTYRAC 1 cut(s) 343
HindII GTYRAC 1 cut(s) 343
HindIII AAGCTT 1 cut(s) 354
HinfI GANTC 1 cut(s) 266
HphI GGTGA 1 cut(s) 325
Hpy166II GTNNAC 1 cut(s) 343
Hpy188I TCNGA 1 cut(s) 82
Hpy8I GTNNAC 1 cut(s) 343
HpyAV CCTTC 1 cut(s) 297
HpyCH4III ACNGT 1 cut(s) 328
HpyCH4IV ACGT 1 cut(s) 186
HpyCH4V TGCA 1 cut(s) 254
HpyF10VI GCNNNNNNNGC 2 cut(s) 56, 134
HpySE526I ACGT 1 cut(s) 186
Hsp92II CATG 1 cut(s) 25
LmnI GCTCC 2 cut(s) 30, 201
LpnPI CCDG 5 cut(s) 48, 158, 180, 184, 204
Lsp1109I GCAGC 2 cut(s) 117, 266
MaeII ACGT 1 cut(s) 186
MaeIII GTNAC 2 cut(s) 278, 313
MboII GAAGA 3 cut(s) 32, 66, 207
MluCI AATT 3 cut(s) 170, 174, 292
MlyI GAGTC 1 cut(s) 275
MnlI CCTC 5 cut(s) 29, 54, 82, 88, 154
MseI TTAA 2 cut(s) 173, 272
MwoI GCNNNNNNNGC 2 cut(s) 56, 134
NlaIII CATG 1 cut(s) 25
NlaIV GGNNCC 1 cut(s) 223
NmuCI GTSAC 1 cut(s) 313
PkrI GCNGC 4 cut(s) 58, 107, 136, 256
PleI GAGTC 1 cut(s) 274
PpsI GAGTC 1 cut(s) 274
PpuMI RGGWCCY 1 cut(s) 221
PshBI ATTAAT 1 cut(s) 173
Psp5II RGGWCCY 1 cut(s) 221
PspN4I GGNNCC 1 cut(s) 223
PspPI GGNCC 2 cut(s) 65, 221
PspPPI RGGWCCY 1 cut(s) 221
RsaI GTAC 1 cut(s) 149
RsaNI GTAC 1 cut(s) 148
SaqAI TTAA 2 cut(s) 173, 272
SatI GCNGC 4 cut(s) 57, 106, 135, 255
Sau96I GGNCC 2 cut(s) 65, 221
SchI GAGTC 1 cut(s) 275
SetI ASST 3 cut(s) 189, 223, 358
SfcI CTRYAG 1 cut(s) 306
SinI GGWCC 2 cut(s) 65, 221
Sse9I AATT 3 cut(s) 170, 174, 292
SsiI CCGC 4 cut(s) 57, 68, 135, 284
TaaI ACNGT 1 cut(s) 328
TaiI ACGT 1 cut(s) 189
TasI AATT 3 cut(s) 170, 174, 292
TatI WGTACW 1 cut(s) 147
TauI GCSGC 2 cut(s) 59, 137
Tru1I TTAA 2 cut(s) 173, 272
Tru9I TTAA 2 cut(s) 173, 272
TscAI CASTG 1 cut(s) 67
TseFI GTSAC 1 cut(s) 313
TseI GCWGC 2 cut(s) 105, 254
Tsp45I GTSAC 1 cut(s) 313
TspRI CASTG 1 cut(s) 67
VpaK11BI GGWCC 2 cut(s) 65, 221
VspI ATTAAT 1 cut(s) 173
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.