Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0005520

Physical Location & Seq

Genomic Coordinates Forward (+)

13380646 .. 13384183

Gene Structure 3538 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0100600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

ATGGCCGCAGCCCCGATAGATGAATGGATACCTCGAATCGAAGCTGGAGGCGATGAAATCCCCAATTACGTACACCCTGATTATTTTACAATCAAGGTATACCATGGTGGGTACATAGAGCATGAGGATAGCAAGTACATTGGTGGAACTGTCAGCTACTATGATAATGTGGACAAGGATAAAATGTCATTGACTGAGGTGGATGGCATAGTGAGAGGGATCAAGTCTGAAATGTGTTGCATGGTGCCAGAAATCAGACTGGTTATTCAGTACCTAGACCACTTAGAGCTTGTCCCGGATTATGAAGATTTGGAGGATTTGTTCATGTATGAGGATCAGATACCTAATTGGGGATGCAGTCAAGCTGGATCATCTGGGGTTATAATAGAGGAGCTCCCTGACTCACCAAGGAAGCCAAAATCGGGGGTGAAGATTGAGGAGATTCCTGATTCACCTAAAAGGCATGCTGAGAAAGTAAAACCAGTGACAACACCATCAAGGAGGTATAAACTGTGTGCAAACAGAAAGAAGGCTGTACCTGCTCTACCTGGTGTGAAGATCAATGAGGCTCAAGATGAAGTTCCAACTCAAGCTAGTAGGGCTCCAACTGTTGACCCTAGTGATAAGGGAAAAAAGAAAATGCAGATGGAGGAACTAGTTGAAGAAGATGACAGTGAAGATGACAGGTGGTTTCAAGAAGAAGCTGAAAATGAAGTTGCAGATGATGGATGGTTTCAAGAAGACCTTGAAGATGAGGTAGCTAGTAGGGGTGAAGAAAATTATGTTGAAGCTTCTGATGATGATGATTCAAATGATGATGATTACAACCCTGCAAAAGATGATGATGAGTATGCAGGGAGATGGGACCTCACAGGCATAACATGCAAGCATGCCATAGCTGCTATCAACTTCATGAGACAAACACCAGAAGACTATGTGGATTCTTGCTACCTCACCAAGACCTACATGGCTGTTTACTCTAACACAGTAAAGCTAGTGAATGGAATGGACTTATGGATCCCTAGTGGTGAACCCCAAATCCTCCCACCTCAGTACAATAGGCATCCTGGTAGGCCAAGAACCAAAAATGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ACT Pkinase_Tyr

Protein Analysis

364

Amino Acids

41.37

Weight (kDa)

4.44

Isoelectric Point (pI)

53.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PB1-like	PF26130	27 - 82	5.7e-07	PB1-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005520)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g14210 FvH4_2g14210 FvH4_2g14210 FvH4_2g14210 FvH4_2g14210 FvH4_2g14210 FvH4_2g14210
malus_domestica	MD05G1021200.v1.1 MD10G1021900.v1.1
prunus_persica	Prupe.8G024900_v2.0.a1 Prupe.8G024900_v2.0.a1 Prupe.8G024900_v2.0.a1 Prupe.8G024900_v2.0.a1
pyrus_communis	pycom05g01230 pycom10g01520
rosa_chinensis	RchiOBHm_Chr6g0276351
rosa_laevigata	RLG00000013399
rosa_multiflora	Rmu_sc0001919.1_g000011
rosa_roxburghii	Rroxscaffold_7G00192330
rosa_rugosa	Rorug06G0100600 Rorug06G0100700 Rorug06G0100800 Rorug06G0100900 Rorug06G0101000
rosa_samantha	Rh6AG211700 Rh6BG215900 Rh6CG218200 Rh6DG208200
rosa_wichuraiana	Rw6G018480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	383
Acc36I	ACCTGC	1 cut(s)	547
AccB1I	GGYRCC	1 cut(s)	244
AccI	GTMKAC	1 cut(s)	99
AciI	CCGC	1 cut(s)	6
AclWI	GGATC	5 cut(s)	227, 342, 376, 1012, 1025
AcoI	YGGCCR	1 cut(s)	3
AfaI	GTAC	6 cut(s)	72, 113, 137, 272, 537, 1055
AfiI	CCNNNNNNNGG	2 cut(s)	350, 422
AgsI	TTSAA	6 cut(s)	662, 695, 737, 749, 788, 810
AhlI	ACTAGT	1 cut(s)	655
AjnI	CCWGG	2 cut(s)	547, 1066
AloI	GAACNNNNNNTCC	4 cut(s)	305, 337, 1023, 1055
Alw21I	GWGCWC	1 cut(s)	396
Alw26I	GTCTC	1 cut(s)	910
AlwI	GGATC	5 cut(s)	227, 342, 376, 1012, 1025
AoxI	GGCC	2 cut(s)	3, 1073
ApeKI	GCWGC	2 cut(s)	8, 899
AspS9I	GGNCC	1 cut(s)	865
AsuC2I	CCSGG	1 cut(s)	296
AsuHPI	GGTGA	6 cut(s)	396, 439, 444, 782, 946, 1040
AvaII	GGWCC	1 cut(s)	865
BamHI	GGATCC	1 cut(s)	1017
BanI	GGYRCC	1 cut(s)	244
BanII	GRGCYC	2 cut(s)	396, 604
BbsI	GAAGAC	2 cut(s)	747, 936
Bbv12I	GWGCWC	1 cut(s)	396
BbvI	GCAGC	2 cut(s)	20, 886
BccI	CCATC	6 cut(s)	197, 502, 640, 719, 723, 855
BciT130I	CCWGG	2 cut(s)	549, 1068
BciVI	GTATCC	1 cut(s)	21
BcnI	CCSGG	1 cut(s)	296
BcoDI	GTCTC	1 cut(s)	910
BcuI	ACTAGT	1 cut(s)	655
BfaI	CTAG	7 cut(s)	275, 594, 618, 656, 762, 995, 1023
BfuAI	ACCTGC	1 cut(s)	547
BfuI	GTATCC	1 cut(s)	21
BisI	GCNGC	3 cut(s)	6, 9, 900
BlsI	GCNGC	3 cut(s)	7, 10, 901
Bme1390I	CCNGG	3 cut(s)	296, 549, 1068
Bme18I	GGWCC	1 cut(s)	865
BmgT120I	GGNCC	1 cut(s)	865
BmiI	GGNNCC	4 cut(s)	246, 603, 866, 1019
BmrFI	CCNGG	3 cut(s)	296, 549, 1068
BmsI	GCATC	2 cut(s)	344, 1072
BpiI	GAAGAC	2 cut(s)	747, 936
BpmI	CTGGAG	1 cut(s)	66
BpuEI	CTTGAG	2 cut(s)	555, 573
BpuMI	CCSGG	1 cut(s)	296
BsaAI	YACGTR	1 cut(s)	70
BsaJI	CCNNGG	2 cut(s)	103, 407
BsaXI	ACNNNNNCTCC	2 cut(s)	305, 335
Bsc4I	CCNNNNNNNGG	2 cut(s)	350, 422
Bse1I	ACTGG	2 cut(s)	264, 482
BseBI	CCWGG	2 cut(s)	549, 1068
BseDI	CCNNGG	2 cut(s)	103, 407
BseGI	GGATG	4 cut(s)	208, 359, 734, 1063
BseLI	CCNNNNNNNGG	2 cut(s)	350, 422
BseMII	CTCAG	3 cut(s)	186, 459, 1064
BseNI	ACTGG	2 cut(s)	264, 482
BseRI	GAGGAG	2 cut(s)	404, 452
BseXI	GCAGC	2 cut(s)	20, 886
BshFI	GGCC	2 cut(s)	5, 1075
BshNI	GGYRCC	1 cut(s)	244
BsiHKAI	GWGCWC	1 cut(s)	396
BsiSI	CCGG	1 cut(s)	296
BslFI	GGGAC	2 cut(s)	278, 878
BslI	CCNNNNNNNGG	2 cut(s)	350, 422
BsmAI	GTCTC	1 cut(s)	910
BsmFI	GGGAC	2 cut(s)	278, 878
BsnI	GGCC	2 cut(s)	5, 1075
Bsp1286I	GDGCHC	2 cut(s)	396, 604
Bsp143I	GATC	5 cut(s)	219, 334, 368, 558, 1017
Bsp19I	CCATGG	1 cut(s)	103
BspACI	CCGC	1 cut(s)	6
BspANI	GGCC	2 cut(s)	5, 1075
BspCNI	CTCAG	3 cut(s)	187, 460, 1063
BspHI	TCATGA	1 cut(s)	912
BspLI	GGNNCC	4 cut(s)	246, 603, 866, 1019
BspMI	ACCTGC	1 cut(s)	547
BspPI	GGATC	5 cut(s)	227, 342, 376, 1012, 1025
BspT107I	GGYRCC	1 cut(s)	244
BsrI	ACTGG	2 cut(s)	264, 482
BssECI	CCNNGG	2 cut(s)	103, 407
BssMI	GATC	5 cut(s)	219, 334, 368, 558, 1017
BssNAI	GTATAC	1 cut(s)	100
BssT1I	CCWWGG	2 cut(s)	103, 407
Bst1107I	GTATAC	1 cut(s)	100
Bst2UI	CCWGG	2 cut(s)	549, 1068
Bst4CI	ACNGT	5 cut(s)	151, 513, 610, 674, 988
BstAPI	GCANNNNNTGC	1 cut(s)	882
BstBAI	YACGTR	1 cut(s)	70
BstC8I	GCNNGC	3 cut(s)	465, 887, 891
BstDEI	CTNAG	4 cut(s)	195, 283, 468, 1050
BstDSI	CCRYGG	1 cut(s)	103
BstF5I	GGATG	4 cut(s)	208, 359, 734, 1063
BstKTI	GATC	5 cut(s)	222, 337, 371, 561, 1020
BstMAI	GTCTC	1 cut(s)	910
BstMBI	GATC	5 cut(s)	219, 334, 368, 558, 1017
BstMWI	GCNNNNNNNGC	4 cut(s)	539, 599, 882, 899
BstNI	CCWGG	2 cut(s)	549, 1068
BstNSI	RCATGY	3 cut(s)	467, 885, 893
BstSCI	CCNGG	3 cut(s)	294, 547, 1066
BstSNI	TACGTA	1 cut(s)	70
BstV1I	GCAGC	2 cut(s)	20, 886
BstV2I	GAAGAC	2 cut(s)	747, 936
BstX2I	RGATCY	1 cut(s)	1017
BstYI	RGATCY	1 cut(s)	1017
BstZ17I	GTATAC	1 cut(s)	100
BsuI	GTATCC	1 cut(s)	21
BsuRI	GGCC	2 cut(s)	5, 1075
BtgI	CCRYGG	1 cut(s)	103
BtgZI	GCGATG	1 cut(s)	66
BtsCI	GGATG	4 cut(s)	208, 359, 734, 1063
BtsIMutI	CAGTG	2 cut(s)	489, 679
BveI	ACCTGC	1 cut(s)	547
Cac8I	GCNNGC	3 cut(s)	465, 887, 891
CciI	TCATGA	1 cut(s)	912
Cfr13I	GGNCC	1 cut(s)	865
CsiI	ACCWGGT	1 cut(s)	547
Csp6I	GTAC	6 cut(s)	71, 112, 136, 271, 536, 1054
CviAII	CATG	9 cut(s)	104, 122, 241, 325, 464, 882, 890, 913, 967
CviQI	GTAC	6 cut(s)	71, 112, 136, 271, 536, 1054
DdeI	CTNAG	4 cut(s)	195, 283, 468, 1050
DpnI	GATC	5 cut(s)	221, 336, 370, 560, 1019
DpnII	GATC	5 cut(s)	219, 334, 368, 558, 1017
EaeI	YGGCCR	1 cut(s)	3
Ecl136II	GAGCTC	1 cut(s)	394
Eco105I	TACGTA	1 cut(s)	70
Eco130I	CCWWGG	2 cut(s)	103, 407
Eco24I	GRGCYC	2 cut(s)	396, 604
Eco47I	GGWCC	1 cut(s)	865
Eco53kI	GAGCTC	1 cut(s)	394
EcoICRI	GAGCTC	1 cut(s)	394
EcoO109I	RGGNCCY	1 cut(s)	865
EcoRII	CCWGG	2 cut(s)	547, 1066
EcoT14I	CCWWGG	2 cut(s)	103, 407
EcoT38I	GRGCYC	2 cut(s)	396, 604
ErhI	CCWWGG	2 cut(s)	103, 407
FaeI	CATG	9 cut(s)	107, 125, 244, 328, 467, 885, 893, 916, 970
FalI	AAGNNNNNCTT	2 cut(s)	729, 761
FaqI	GGGAC	2 cut(s)	278, 878
FatI	CATG	9 cut(s)	103, 121, 240, 324, 463, 881, 889, 912, 966
FblI	GTMKAC	1 cut(s)	99
Fnu4HI	GCNGC	3 cut(s)	6, 9, 900
FokI	GGATG	4 cut(s)	215, 366, 741, 1050
FriOI	GRGCYC	2 cut(s)	396, 604
Fsp4HI	GCNGC	3 cut(s)	6, 9, 900
FspBI	CTAG	7 cut(s)	275, 594, 618, 656, 762, 995, 1023
GluI	GCNGC	3 cut(s)	6, 9, 900
GsuI	CTGGAG	1 cut(s)	66
HaeIII	GGCC	2 cut(s)	5, 1075
HapII	CCGG	1 cut(s)	296
Hin1II	CATG	9 cut(s)	107, 125, 244, 328, 467, 885, 893, 916, 970
HincII	GTYRAC	1 cut(s)	613
HindII	GTYRAC	1 cut(s)	613
HindIII	AAGCTT	1 cut(s)	789
HinfI	GANTC	6 cut(s)	36, 401, 442, 449, 806, 941
HpaII	CCGG	1 cut(s)	296
HphI	GGTGA	6 cut(s)	396, 439, 444, 782, 946, 1040
Hpy166II	GTNNAC	6 cut(s)	73, 100, 172, 613, 976, 1031
Hpy188I	TCNGA	4 cut(s)	229, 257, 339, 796
Hpy188III	TCNNGA	5 cut(s)	446, 572, 695, 737, 913
Hpy8I	GTNNAC	6 cut(s)	73, 100, 172, 613, 976, 1031
HpyAV	CCTTC	1 cut(s)	523
HpyCH4III	ACNGT	5 cut(s)	151, 513, 610, 674, 988
HpyCH4IV	ACGT	1 cut(s)	69
HpyCH4V	TGCA	8 cut(s)	240, 357, 518, 643, 719, 833, 854, 885
HpyF10VI	GCNNNNNNNGC	4 cut(s)	539, 599, 882, 899
HpyF3I	CTNAG	4 cut(s)	195, 283, 468, 1050
HpySE526I	ACGT	1 cut(s)	69
Hsp92II	CATG	9 cut(s)	107, 125, 244, 328, 467, 885, 893, 916, 970
Kzo9I	GATC	5 cut(s)	219, 334, 368, 558, 1017
LmnI	GCTCC	3 cut(s)	391, 399, 607
Lsp1109I	GCAGC	2 cut(s)	20, 886
LweI	GCATC	2 cut(s)	344, 1072
MabI	ACCWGGT	1 cut(s)	547
MaeI	CTAG	7 cut(s)	275, 594, 618, 656, 762, 995, 1023
MaeII	ACGT	1 cut(s)	69
MaeIII	GTNAC	1 cut(s)	484
MalI	GATC	5 cut(s)	221, 336, 370, 560, 1019
MboI	GATC	5 cut(s)	219, 334, 368, 558, 1017
MflI	RGATCY	1 cut(s)	1017
MhlI	GDGCHC	2 cut(s)	396, 604
MluCI	AATT	3 cut(s)	64, 346, 778
MlyI	GAGTC	1 cut(s)	395
MmeI	TCCRAC	2 cut(s)	608, 629
MseI	TTAA	1 cut(s)	1093
MspI	CCGG	1 cut(s)	296
MspR9I	CCNGG	3 cut(s)	296, 549, 1068
MvaI	CCWGG	2 cut(s)	549, 1068
MwoI	GCNNNNNNNGC	4 cut(s)	539, 599, 882, 899
NciI	CCSGG	1 cut(s)	296
NcoI	CCATGG	1 cut(s)	103
NdeII	GATC	5 cut(s)	219, 334, 368, 558, 1017
NlaIII	CATG	9 cut(s)	107, 125, 244, 328, 467, 885, 893, 916, 970
NlaIV	GGNNCC	4 cut(s)	246, 603, 866, 1019
NmuCI	GTSAC	1 cut(s)	484
NspI	RCATGY	3 cut(s)	467, 885, 893
PaeI	GCATGC	2 cut(s)	467, 893
PagI	TCATGA	1 cut(s)	912
PfeI	GAWTC	5 cut(s)	36, 442, 449, 806, 941
PfoI	TCCNGGA	1 cut(s)	294
PkrI	GCNGC	3 cut(s)	7, 10, 901
PleI	GAGTC	1 cut(s)	395
PpsI	GAGTC	1 cut(s)	395
Ppu21I	YACGTR	1 cut(s)	70
PpuMI	RGGWCCY	1 cut(s)	865
PsiI	TTATAA	1 cut(s)	383
Psp124BI	GAGCTC	1 cut(s)	396
Psp5II	RGGWCCY	1 cut(s)	865
Psp6I	CCWGG	2 cut(s)	547, 1066
PspGI	CCWGG	2 cut(s)	547, 1066
PspN4I	GGNNCC	4 cut(s)	246, 603, 866, 1019
PspPI	GGNCC	1 cut(s)	865
PspPPI	RGGWCCY	1 cut(s)	865
PsuI	RGATCY	1 cut(s)	1017
RsaI	GTAC	6 cut(s)	72, 113, 137, 272, 537, 1055
RsaNI	GTAC	6 cut(s)	71, 112, 136, 271, 536, 1054
SacI	GAGCTC	1 cut(s)	396
SaqAI	TTAA	1 cut(s)	1093
SatI	GCNGC	3 cut(s)	6, 9, 900
Sau3AI	GATC	5 cut(s)	219, 334, 368, 558, 1017
Sau96I	GGNCC	1 cut(s)	865
SchI	GAGTC	1 cut(s)	395
ScrFI	CCNGG	3 cut(s)	296, 549, 1068
SduI	GDGCHC	2 cut(s)	396, 604
SexAI	ACCWGGT	1 cut(s)	547
SfaNI	GCATC	2 cut(s)	344, 1072
SinI	GGWCC	1 cut(s)	865
SmlI	CTYRAG	2 cut(s)	570, 588
SmoI	CTYRAG	2 cut(s)	570, 588
SnaBI	TACGTA	1 cut(s)	70
SpeI	ACTAGT	1 cut(s)	655
SphI	GCATGC	2 cut(s)	467, 893
Sse9I	AATT	3 cut(s)	64, 346, 778
SsiI	CCGC	1 cut(s)	6
SspMI	CTAG	7 cut(s)	275, 594, 618, 656, 762, 995, 1023
SstI	GAGCTC	1 cut(s)	396
StyD4I	CCNGG	3 cut(s)	294, 547, 1066
StyI	CCWWGG	2 cut(s)	103, 407
TaaI	ACNGT	5 cut(s)	151, 513, 610, 674, 988
TaiI	ACGT	1 cut(s)	72
TaqI	TCGA	2 cut(s)	34, 39
TasI	AATT	3 cut(s)	64, 346, 778
TatI	WGTACW	2 cut(s)	135, 1053
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	5 cut(s)	36, 442, 449, 806, 941
Tru1I	TTAA	1 cut(s)	1093
Tru9I	TTAA	1 cut(s)	1093
TscAI	CASTG	2 cut(s)	489, 679
TseFI	GTSAC	1 cut(s)	484
TseI	GCWGC	2 cut(s)	8, 899
Tsp45I	GTSAC	1 cut(s)	484
TspDTI	ATGAA	7 cut(s)	36, 69, 313, 318, 591, 726, 901
TspRI	CASTG	2 cut(s)	489, 679
VpaK11BI	GGWCC	1 cut(s)	865
XceI	RCATGY	3 cut(s)	467, 885, 893
XcmI	CCANNNNNNNNNTGG	1 cut(s)	964
XmiI	GTMKAC	1 cut(s)	99
XspI	CTAG	7 cut(s)	275, 594, 618, 656, 762, 995, 1023

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.