Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0005520

Physical Location & Seq

Genomic Coordinates Forward (+)

36697647 .. 36703899

Gene Structure 6253 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G018480.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGGATTTGACTGAAGGCGTCGGAGAGAGCTCGTCGCCGCCGAGAAGCTTTGTTAGCTTCAATAACTACGATGTGAGGAACGATGTCTATAATCGATTGGTGGAGAATCGTCATCTTCAGGCTCTGACTCAACCGGACTTCCGTGAGCAGTTGGACGCTCACTTCAATCGCTTGCCTGCTAGTTATGGGCTTGACGTTAACATGGACAGAGTGGAAGATGTTTTGATACATCAAAAGCTTCTAACATTGGCAAAGGACCCGGAGAAACGGCCTGTTTATCATACCCGATTCTTGGAGAGTATCTCTACGGGGACAGATGATGATGAGGATGAACAATTCACTAGTAATGTTTCAACCTCAAGGCTATCATGTAACGAAATCAATGAAGTAGCTGCGCAGCCACATGATAGAACTAGGAATTGTGCTGTTGACTTTGAACCTTGCTCTAGGCTCGGAGACCTAAATTTGGATGTTAGAAAGAATGCTAAGGATGTCGATGAAAGAGATGTGCTGGAGAGTTTTCCCAGAAGGCAAGATATATCACATATGCTCACTCATGAAGTAATTTTTTCATCCATTGACAAGCCTAAGCTTCTTAGCCAGCTTTCTGCATTGCTTTCGGATATAGGCCTTAACATCCGCGAAGCACATGTCTTCTCGACCACTGATGGCTACTCCTTAGATGTATTTGTGGTGGATGGATGGCCTGTTGAGGATACAGATGGTTTAAATGAAGCTATTGAAAAAGCAATTGCTAGAAGTGAGGGATCATGGTCAAGATCTTCACATTCTCATTCATCTGGAGTGAAAGCGATAGTGGCACAAGAAAAACCTGGAAGCTGGGAAATAGACAGGAGACTATTGAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ACT Pkinase_Tyr

Protein Analysis

289

Amino Acids

32.71

Weight (kDa)

4.93

Isoelectric Point (pI)

42.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ACT	PF01842	187 - 233	5.6e-06	ACT domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005520)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g14210 FvH4_2g14210 FvH4_2g14210 FvH4_2g14210 FvH4_2g14210 FvH4_2g14210 FvH4_2g14210
malus_domestica	MD05G1021200.v1.1 MD10G1021900.v1.1
prunus_persica	Prupe.8G024900_v2.0.a1 Prupe.8G024900_v2.0.a1 Prupe.8G024900_v2.0.a1 Prupe.8G024900_v2.0.a1
pyrus_communis	pycom05g01230 pycom10g01520
rosa_chinensis	RchiOBHm_Chr6g0276351
rosa_laevigata	RLG00000013399
rosa_multiflora	Rmu_sc0001919.1_g000011
rosa_roxburghii	Rroxscaffold_7G00192330
rosa_rugosa	Rorug06G0100600 Rorug06G0100700 Rorug06G0100800 Rorug06G0100900 Rorug06G0101000
rosa_samantha	Rh6AG211700 Rh6BG215900 Rh6CG218200 Rh6DG208200
rosa_wichuraiana	Rw6G018480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	396
AccII	CGCG	1 cut(s)	642
AciI	CCGC	2 cut(s)	38, 640
AclWI	GGATC	1 cut(s)	775
AcsI	RAATTY	1 cut(s)	463
AcuI	CTGAAG	2 cut(s)	33, 101
AcyI	GRCGYC	1 cut(s)	18
AfiI	CCNNNNNNNGG	2 cut(s)	292, 466
AflIII	ACRYGT	1 cut(s)	649
AgsI	TTSAA	6 cut(s)	61, 166, 354, 437, 743, 865
AhlI	ACTAGT	1 cut(s)	341
AjnI	CCWGG	1 cut(s)	832
AluBI	AGCT	9 cut(s)	30, 48, 57, 238, 392, 592, 604, 737, 840
AluI	AGCT	9 cut(s)	30, 48, 57, 238, 392, 592, 604, 737, 840
Alw21I	GWGCWC	1 cut(s)	32
Alw26I	GTCTC	2 cut(s)	450, 850
AlwI	GGATC	1 cut(s)	775
AlwNI	CAGNNNCTG	1 cut(s)	124
AoxI	GGCC	3 cut(s)	269, 628, 704
ApeKI	GCWGC	2 cut(s)	392, 397
ApoI	RAATTY	1 cut(s)	463
ArsI	GACNNNNNNTTYG	2 cut(s)	636, 668
AspLEI	GCGC	1 cut(s)	397
AspS9I	GGNCC	1 cut(s)	256
AsuC2I	CCSGG	1 cut(s)	260
AvaII	GGWCC	1 cut(s)	256
BanII	GRGCYC	1 cut(s)	32
BbsI	GAAGAC	1 cut(s)	646
Bbv12I	GWGCWC	1 cut(s)	32
BbvI	GCAGC	2 cut(s)	379, 409
BccI	CCATC	4 cut(s)	662, 692, 696, 716
BceAI	ACGGC	1 cut(s)	284
BcgI	CGANNNNNNTGC	2 cut(s)	600, 634
BciT130I	CCWGG	1 cut(s)	834
BciVI	GTATCC	1 cut(s)	709
BcnI	CCSGG	1 cut(s)	260
BcoDI	GTCTC	2 cut(s)	450, 850
BcuI	ACTAGT	1 cut(s)	341
BfaI	CTAG	5 cut(s)	180, 342, 414, 447, 756
BfuI	GTATCC	1 cut(s)	709
BglII	AGATCT	1 cut(s)	779
BisI	GCNGC	3 cut(s)	38, 393, 398
BlsI	GCNGC	3 cut(s)	39, 394, 399
Bme1390I	CCNGG	2 cut(s)	260, 834
Bme18I	GGWCC	1 cut(s)	256
BmgT120I	GGNCC	1 cut(s)	256
BmiI	GGNNCC	1 cut(s)	258
BmrFI	CCNGG	2 cut(s)	260, 834
BpiI	GAAGAC	1 cut(s)	646
BplI	GAGNNNNNCTC	2 cut(s)	287, 319
BpmI	CTGGAG	2 cut(s)	533, 822
Bpu10I	CCTNAGC	2 cut(s)	486, 588
BpuEI	CTTGAG	1 cut(s)	343
BpuMI	CCSGG	1 cut(s)	260
Bsa29I	ATCGAT	1 cut(s)	94
BsaHI	GRCGYC	1 cut(s)	18
BsaI	GGTCTC	1 cut(s)	450
BsaWI	WCCGGW	1 cut(s)	133
Bsc4I	CCNNNNNNNGG	2 cut(s)	292, 466
Bse3DI	GCAATG	1 cut(s)	611
BseBI	CCWGG	1 cut(s)	834
BseCI	ATCGAT	1 cut(s)	94
BseGI	GGATG	7 cut(s)	334, 475, 496, 572, 636, 703, 707
BseLI	CCNNNNNNNGG	2 cut(s)	292, 466
BseMI	GCAATG	1 cut(s)	611
BseXI	GCAGC	2 cut(s)	379, 409
BseYI	CCCAGC	1 cut(s)	840
Bsh1236I	CGCG	1 cut(s)	642
BshFI	GGCC	3 cut(s)	271, 630, 706
BshVI	ATCGAT	1 cut(s)	94
BsiHKAI	GWGCWC	1 cut(s)	32
BsiSI	CCGG	2 cut(s)	134, 260
BslFI	GGGAC	1 cut(s)	325
BslI	CCNNNNNNNGG	2 cut(s)	292, 466
BsmAI	GTCTC	2 cut(s)	450, 850
BsmFI	GGGAC	1 cut(s)	325
BsmI	GAATGC	1 cut(s)	487
BsnI	GGCC	3 cut(s)	271, 630, 706
Bso31I	GGTCTC	1 cut(s)	450
Bsp1286I	GDGCHC	1 cut(s)	32
Bsp143I	GATC	2 cut(s)	767, 779
BspACI	CCGC	2 cut(s)	38, 640
BspANI	GGCC	3 cut(s)	271, 630, 706
BspDI	ATCGAT	1 cut(s)	94
BspFNI	CGCG	1 cut(s)	642
BspHI	TCATGA	1 cut(s)	556
BspLI	GGNNCC	1 cut(s)	258
BspPI	GGATC	1 cut(s)	775
BspTNI	GGTCTC	1 cut(s)	450
BsrDI	GCAATG	1 cut(s)	611
BssMI	GATC	2 cut(s)	767, 779
BssNI	GRCGYC	1 cut(s)	18
Bst2UI	CCWGG	1 cut(s)	834
BstACI	GRCGYC	1 cut(s)	18
BstC8I	GCNNGC	3 cut(s)	173, 177, 602
BstDEI	CTNAG	4 cut(s)	486, 588, 596, 679
BstF5I	GGATG	7 cut(s)	334, 475, 496, 572, 636, 703, 707
BstFNI	CGCG	1 cut(s)	642
BstHHI	GCGC	1 cut(s)	397
BstKTI	GATC	2 cut(s)	770, 782
BstMAI	GTCTC	2 cut(s)	450, 850
BstMBI	GATC	2 cut(s)	767, 779
BstMWI	GCNNNNNNNGC	2 cut(s)	54, 818
BstNI	CCWGG	1 cut(s)	834
BstNSI	RCATGY	1 cut(s)	653
BstSCI	CCNGG	2 cut(s)	258, 832
BstUI	CGCG	1 cut(s)	642
BstV1I	GCAGC	2 cut(s)	379, 409
BstV2I	GAAGAC	1 cut(s)	646
BstX2I	RGATCY	1 cut(s)	779
BstYI	RGATCY	1 cut(s)	779
Bsu15I	ATCGAT	1 cut(s)	94
BsuI	GTATCC	1 cut(s)	709
BsuRI	GGCC	3 cut(s)	271, 630, 706
BsuTUI	ATCGAT	1 cut(s)	94
BtsCI	GGATG	7 cut(s)	334, 475, 496, 572, 636, 703, 707
BtsIMutI	CAGTG	1 cut(s)	663
Cac8I	GCNNGC	3 cut(s)	173, 177, 602
CaiI	CAGNNNCTG	1 cut(s)	124
CciI	TCATGA	1 cut(s)	556
CfoI	GCGC	1 cut(s)	397
Cfr13I	GGNCC	1 cut(s)	256
ClaI	ATCGAT	1 cut(s)	94
CseI	GACGC	2 cut(s)	7, 164
CviAII	CATG	6 cut(s)	202, 369, 404, 557, 650, 771
DdeI	CTNAG	4 cut(s)	486, 588, 596, 679
DpnI	GATC	2 cut(s)	769, 781
DpnII	GATC	2 cut(s)	767, 779
DraI	TTTAAA	1 cut(s)	729
Ecl136II	GAGCTC	1 cut(s)	30
Eco147I	AGGCCT	1 cut(s)	630
Eco24I	GRGCYC	1 cut(s)	32
Eco31I	GGTCTC	1 cut(s)	450
Eco47I	GGWCC	1 cut(s)	256
Eco53kI	GAGCTC	1 cut(s)	30
Eco57I	CTGAAG	2 cut(s)	33, 101
EcoICRI	GAGCTC	1 cut(s)	30
EcoO109I	RGGNCCY	1 cut(s)	256
EcoRII	CCWGG	1 cut(s)	832
EcoT38I	GRGCYC	1 cut(s)	32
FaeI	CATG	6 cut(s)	205, 372, 407, 560, 653, 774
FaqI	GGGAC	1 cut(s)	325
FatI	CATG	6 cut(s)	201, 368, 403, 556, 649, 770
FauNDI	CATATG	1 cut(s)	546
Fnu4HI	GCNGC	3 cut(s)	38, 393, 398
FokI	GGATG	7 cut(s)	341, 482, 503, 559, 623, 710, 714
FriOI	GRGCYC	1 cut(s)	32
Fsp4HI	GCNGC	3 cut(s)	38, 393, 398
FspBI	CTAG	5 cut(s)	180, 342, 414, 447, 756
FspI	TGCGCA	1 cut(s)	396
GlaI	GCGC	1 cut(s)	396
GluI	GCNGC	3 cut(s)	38, 393, 398
GsaI	CCCAGC	1 cut(s)	844
GsuI	CTGGAG	2 cut(s)	533, 822
HaeIII	GGCC	3 cut(s)	271, 630, 706
HapII	CCGG	2 cut(s)	134, 260
HgaI	GACGC	2 cut(s)	7, 164
HhaI	GCGC	1 cut(s)	397
Hin1I	GRCGYC	1 cut(s)	18
Hin1II	CATG	6 cut(s)	205, 372, 407, 560, 653, 774
Hin6I	GCGC	1 cut(s)	395
HinP1I	GCGC	1 cut(s)	395
HincII	GTYRAC	2 cut(s)	199, 430
HindII	GTYRAC	2 cut(s)	199, 430
HindIII	AAGCTT	3 cut(s)	46, 236, 590
HinfI	GANTC	3 cut(s)	106, 127, 288
HpaI	GTTAAC	1 cut(s)	199
HpaII	CCGG	2 cut(s)	134, 260
Hpy166II	GTNNAC	2 cut(s)	199, 430
Hpy188I	TCNGA	4 cut(s)	23, 126, 455, 622
Hpy188III	TCNNGA	4 cut(s)	557, 658, 777, 801
Hpy8I	GTNNAC	2 cut(s)	199, 430
Hpy99I	CGWCG	2 cut(s)	23, 37
HpyAV	CCTTC	2 cut(s)	8, 522
HpyCH4IV	ACGT	1 cut(s)	195
HpyCH4V	TGCA	1 cut(s)	611
HpyF10VI	GCNNNNNNNGC	2 cut(s)	54, 818
HpyF3I	CTNAG	4 cut(s)	486, 588, 596, 679
HpySE526I	ACGT	1 cut(s)	195
Hsp92I	GRCGYC	1 cut(s)	18
Hsp92II	CATG	6 cut(s)	205, 372, 407, 560, 653, 774
HspAI	GCGC	1 cut(s)	395
KspAI	GTTAAC	1 cut(s)	199
Kzo9I	GATC	2 cut(s)	767, 779
Lsp1109I	GCAGC	2 cut(s)	379, 409
MaeI	CTAG	5 cut(s)	180, 342, 414, 447, 756
MaeII	ACGT	1 cut(s)	195
MaeIII	GTNAC	1 cut(s)	371
MalI	GATC	2 cut(s)	769, 781
MboI	GATC	2 cut(s)	767, 779
MboII	GAAGA	4 cut(s)	107, 227, 646, 774
MfeI	CAATTG	1 cut(s)	750
MflI	RGATCY	1 cut(s)	779
MhlI	GDGCHC	1 cut(s)	32
MluCI	AATT	5 cut(s)	335, 418, 463, 564, 750
MlyI	GAGTC	1 cut(s)	121
MmeI	TCCRAC	1 cut(s)	132
MnlI	CCTC	5 cut(s)	69, 319, 367, 706, 757
MseI	TTAA	3 cut(s)	198, 633, 728
MspI	CCGG	2 cut(s)	134, 260
MspR9I	CCNGG	2 cut(s)	260, 834
MunI	CAATTG	1 cut(s)	750
Mva1269I	GAATGC	1 cut(s)	487
MvaI	CCWGG	1 cut(s)	834
MvnI	CGCG	1 cut(s)	642
MwoI	GCNNNNNNNGC	2 cut(s)	54, 818
NciI	CCSGG	1 cut(s)	260
NdeI	CATATG	1 cut(s)	546
NdeII	GATC	2 cut(s)	767, 779
NlaIII	CATG	6 cut(s)	205, 372, 407, 560, 653, 774
NlaIV	GGNNCC	1 cut(s)	258
NmeAIII	GCCGAG	1 cut(s)	66
NsbI	TGCGCA	1 cut(s)	396
NspI	RCATGY	1 cut(s)	653
PagI	TCATGA	1 cut(s)	556
PceI	AGGCCT	1 cut(s)	630
PciI	ACATGT	1 cut(s)	649
PcsI	WCGNNNNNNNCGW	1 cut(s)	38
PctI	GAATGC	1 cut(s)	487
PfeI	GAWTC	2 cut(s)	106, 288
PkrI	GCNGC	3 cut(s)	39, 394, 399
PleI	GAGTC	1 cut(s)	121
PpsI	GAGTC	1 cut(s)	121
PpuMI	RGGWCCY	1 cut(s)	256
PscI	ACATGT	1 cut(s)	649
Psp124BI	GAGCTC	1 cut(s)	32
Psp5II	RGGWCCY	1 cut(s)	256
Psp6I	CCWGG	1 cut(s)	832
PspFI	CCCAGC	1 cut(s)	840
PspGI	CCWGG	1 cut(s)	832
PspN4I	GGNNCC	1 cut(s)	258
PspPI	GGNCC	1 cut(s)	256
PspPPI	RGGWCCY	1 cut(s)	256
PstNI	CAGNNNCTG	1 cut(s)	124
PsuI	RGATCY	1 cut(s)	779
SacI	GAGCTC	1 cut(s)	32
SaqAI	TTAA	3 cut(s)	198, 633, 728
SatI	GCNGC	3 cut(s)	38, 393, 398
Sau3AI	GATC	2 cut(s)	767, 779
Sau96I	GGNCC	1 cut(s)	256
SchI	GAGTC	1 cut(s)	121
ScrFI	CCNGG	2 cut(s)	260, 834
SduI	GDGCHC	1 cut(s)	32
SinI	GGWCC	1 cut(s)	256
SmlI	CTYRAG	1 cut(s)	358
SmoI	CTYRAG	1 cut(s)	358
SpeI	ACTAGT	1 cut(s)	341
Sse9I	AATT	5 cut(s)	335, 418, 463, 564, 750
SseBI	AGGCCT	1 cut(s)	630
SsiI	CCGC	2 cut(s)	38, 640
SspMI	CTAG	5 cut(s)	180, 342, 414, 447, 756
SstI	GAGCTC	1 cut(s)	32
StuI	AGGCCT	1 cut(s)	630
StyD4I	CCNGG	2 cut(s)	258, 832
TaiI	ACGT	1 cut(s)	198
TaqI	TCGA	3 cut(s)	94, 495, 659
TasI	AATT	5 cut(s)	335, 418, 463, 564, 750
TauI	GCSGC	1 cut(s)	40
TfiI	GAWTC	2 cut(s)	106, 288
Tru1I	TTAA	3 cut(s)	198, 633, 728
Tru9I	TTAA	3 cut(s)	198, 633, 728
TscAI	CASTG	1 cut(s)	670
TseI	GCWGC	2 cut(s)	392, 397
TspDTI	ATGAA	7 cut(s)	345, 399, 513, 561, 573, 747, 786
TspGWI	ACGGA	1 cut(s)	131
TspRI	CASTG	1 cut(s)	670
VpaK11BI	GGWCC	1 cut(s)	256
XapI	RAATTY	1 cut(s)	463
XceI	RCATGY	1 cut(s)	653
XspI	CTAG	5 cut(s)	180, 342, 414, 447, 756

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.