Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0005520

Physical Location & Seq

Genomic Coordinates Forward (+)

13399975 .. 13413705

Gene Structure 13731 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0100800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGTCGTCGGAGCTGTTTGGTAAGTTGGAGACTGAAGTTGAAATCAACGCTCCGGCTGCCAAGTACCACGAACTCTTCACGCGCCGGCCACACCATCTTTCCAATATCAGTCCCGATAAAATTCAGAGTTGTGAGTTACTTGAAGGTCAATGGGGAGATCTGGGTTCGGTCATCTACTGGAATTATTGCTATGATGGGAAAACTACAGTGGCTACAGACTTGATTGAAGCCGTAGACGACGAAAAGAATTCTGTGACCTTCAAAGTCATTGATGGACCTCTTCTGGAGCACTACAAGAGCTTCAGGCTCATTGTCGAAGCTACTCCGAAAGGTGATCGGAACAGCTTGGTTCATCTGATTGTGGAATATGAAAAGCTTCACGACCAAGTTTCAGACCCGCATAGCTTGCTCCAGTTTGTAGCTGATCTCTCCAAAGATATGGGTGCTCACCTCAGTACTCAACCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ACT Pkinase_Tyr

Protein Analysis

155

Amino Acids

17.53

Weight (kDa)

5.04

Isoelectric Point (pI)

35.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Bet_v_1	PF00407	7 - 152	1.2e-48	Pathogenesis-related protein Bet v 1 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005520)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g14210 FvH4_2g14210 FvH4_2g14210 FvH4_2g14210 FvH4_2g14210 FvH4_2g14210 FvH4_2g14210
malus_domestica	MD05G1021200.v1.1 MD10G1021900.v1.1
prunus_persica	Prupe.8G024900_v2.0.a1 Prupe.8G024900_v2.0.a1 Prupe.8G024900_v2.0.a1 Prupe.8G024900_v2.0.a1
pyrus_communis	pycom05g01230 pycom10g01520
rosa_chinensis	RchiOBHm_Chr6g0276351
rosa_laevigata	RLG00000013399
rosa_multiflora	Rmu_sc0001919.1_g000011
rosa_roxburghii	Rroxscaffold_7G00192330
rosa_rugosa	Rorug06G0100600 Rorug06G0100700 Rorug06G0100800 Rorug06G0100900 Rorug06G0101000
rosa_samantha	Rh6AG211700 Rh6BG215900 Rh6CG218200 Rh6DG208200
rosa_wichuraiana	Rw6G018480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	234
AccII	CGCG	1 cut(s)	82
AciI	CCGC	1 cut(s)	398
AcoI	YGGCCR	1 cut(s)	86
AcsI	RAATTY	2 cut(s)	120, 247
AcuI	CTGAAG	2 cut(s)	54, 286
AfaI	GTAC	2 cut(s)	65, 457
AgsI	TTSAA	4 cut(s)	41, 143, 227, 262
AluBI	AGCT	7 cut(s)	13, 300, 320, 345, 376, 405, 422
AluI	AGCT	7 cut(s)	13, 300, 320, 345, 376, 405, 422
Alw21I	GWGCWC	2 cut(s)	291, 448
Alw26I	GTCTC	1 cut(s)	23
AoxI	GGCC	1 cut(s)	86
ApeKI	GCWGC	1 cut(s)	56
ApoI	RAATTY	2 cut(s)	120, 247
Asp700I	GAANNNNTTC	1 cut(s)	375
AspLEI	GCGC	1 cut(s)	84
AspS9I	GGNCC	1 cut(s)	275
AsuHPI	GGTGA	2 cut(s)	344, 440
AvaII	GGWCC	1 cut(s)	275
Bbv12I	GWGCWC	2 cut(s)	291, 448
BbvI	GCAGC	1 cut(s)	43
BccI	CCATC	3 cut(s)	102, 188, 266
BceAI	ACGGC	1 cut(s)	215
BcoDI	GTCTC	1 cut(s)	23
BfmI	CTRYAG	2 cut(s)	204, 213
BglII	AGATCT	1 cut(s)	157
BisI	GCNGC	1 cut(s)	57
BlsI	GCNGC	1 cut(s)	58
BmcAI	AGTACT	1 cut(s)	457
Bme18I	GGWCC	1 cut(s)	275
BmgT120I	GGNCC	1 cut(s)	275
BpmI	CTGGAG	2 cut(s)	305, 395
Bse118I	RCCGGY	1 cut(s)	84
Bse1I	ACTGG	2 cut(s)	182, 412
BseMII	CTCAG	1 cut(s)	466
BseNI	ACTGG	2 cut(s)	182, 412
BseXI	GCAGC	1 cut(s)	43
Bsh1236I	CGCG	1 cut(s)	82
BshFI	GGCC	1 cut(s)	88
BsiHKAI	GWGCWC	2 cut(s)	291, 448
BsiSI	CCGG	2 cut(s)	53, 85
BslFI	GGGAC	1 cut(s)	96
BsmAI	GTCTC	1 cut(s)	23
BsmFI	GGGAC	1 cut(s)	96
BsnI	GGCC	1 cut(s)	88
Bsp1286I	GDGCHC	2 cut(s)	291, 448
Bsp143I	GATC	3 cut(s)	157, 334, 424
BspACI	CCGC	1 cut(s)	398
BspANI	GGCC	1 cut(s)	88
BspCNI	CTCAG	1 cut(s)	465
BspFNI	CGCG	1 cut(s)	82
BsrFI	RCCGGY	1 cut(s)	84
BsrI	ACTGG	2 cut(s)	182, 412
BssAI	RCCGGY	1 cut(s)	84
BssMI	GATC	3 cut(s)	157, 334, 424
Bst4CI	ACNGT	1 cut(s)	208
Bst6I	CTCTTC	2 cut(s)	80, 285
BstAPI	GCANNNNNTGC	1 cut(s)	406
BstC8I	GCNNGC	2 cut(s)	86, 407
BstDEI	CTNAG	1 cut(s)	452
BstFNI	CGCG	1 cut(s)	82
BstHHI	GCGC	1 cut(s)	84
BstKTI	GATC	3 cut(s)	160, 337, 427
BstMAI	GTCTC	1 cut(s)	23
BstMBI	GATC	3 cut(s)	157, 334, 424
BstMWI	GCNNNNNNNGC	2 cut(s)	56, 406
BstSFI	CTRYAG	2 cut(s)	204, 213
BstUI	CGCG	1 cut(s)	82
BstV1I	GCAGC	1 cut(s)	43
BstX2I	RGATCY	1 cut(s)	157
BstXI	CCANNNNNNTGG	1 cut(s)	439
BstYI	RGATCY	1 cut(s)	157
BsuRI	GGCC	1 cut(s)	88
BtsIMutI	CAGTG	1 cut(s)	213
Cac8I	GCNNGC	2 cut(s)	86, 407
CfoI	GCGC	1 cut(s)	84
Cfr10I	RCCGGY	1 cut(s)	84
Cfr13I	GGNCC	1 cut(s)	275
Csp6I	GTAC	2 cut(s)	64, 456
CviQI	GTAC	2 cut(s)	64, 456
DdeI	CTNAG	1 cut(s)	452
DpnI	GATC	3 cut(s)	159, 336, 426
DpnII	GATC	3 cut(s)	157, 334, 424
EaeI	YGGCCR	1 cut(s)	86
Eam1104I	CTCTTC	2 cut(s)	80, 285
EarI	CTCTTC	2 cut(s)	80, 285
Eco47I	GGWCC	1 cut(s)	275
Eco57I	CTGAAG	2 cut(s)	54, 286
EcoRI	GAATTC	1 cut(s)	247
FaiI	YATR	5 cut(s)	192, 369, 402, 440, 466
FaqI	GGGAC	1 cut(s)	96
FauI	CCCGC	1 cut(s)	405
FblI	GTMKAC	1 cut(s)	234
Fnu4HI	GCNGC	1 cut(s)	57
Fsp4HI	GCNGC	1 cut(s)	57
GlaI	GCGC	1 cut(s)	83
GluI	GCNGC	1 cut(s)	57
GsuI	CTGGAG	2 cut(s)	305, 395
HaeIII	GGCC	1 cut(s)	88
HapII	CCGG	2 cut(s)	53, 85
HhaI	GCGC	1 cut(s)	84
Hin6I	GCGC	1 cut(s)	82
HinP1I	GCGC	1 cut(s)	82
HindIII	AAGCTT	1 cut(s)	374
HpaII	CCGG	2 cut(s)	53, 85
HphI	GGTGA	2 cut(s)	344, 440
Hpy166II	GTNNAC	1 cut(s)	235
Hpy188I	TCNGA	6 cut(s)	10, 126, 327, 339, 357, 394
Hpy188III	TCNNGA	3 cut(s)	113, 284, 380
Hpy8I	GTNNAC	1 cut(s)	235
Hpy99I	CGWCG	2 cut(s)	10, 242
HpyAV	CCTTC	2 cut(s)	137, 268
HpyCH4III	ACNGT	1 cut(s)	208
HpyF10VI	GCNNNNNNNGC	2 cut(s)	56, 406
HpyF3I	CTNAG	1 cut(s)	452
HspAI	GCGC	1 cut(s)	82
KroI	GCCGGC	1 cut(s)	84
KroNI	GCCGGC	1 cut(s)	86
Kzo9I	GATC	3 cut(s)	157, 334, 424
LmnI	GCTCC	4 cut(s)	10, 55, 286, 414
LpnPI	CCDG	7 cut(s)	66, 98, 146, 163, 269, 289, 425
Lsp1109I	GCAGC	1 cut(s)	43
MaeIII	GTNAC	2 cut(s)	135, 253
MalI	GATC	3 cut(s)	159, 336, 426
MboI	GATC	3 cut(s)	157, 334, 424
MboII	GAAGA	2 cut(s)	67, 272
MflI	RGATCY	1 cut(s)	157
MhlI	GDGCHC	2 cut(s)	291, 448
MluCI	AATT	3 cut(s)	120, 181, 247
MmeI	TCCRAC	1 cut(s)	6
MnlI	CCTC	2 cut(s)	288, 461
MroNI	GCCGGC	1 cut(s)	84
MroXI	GAANNNNTTC	1 cut(s)	375
MspI	CCGG	2 cut(s)	53, 85
MvnI	CGCG	1 cut(s)	82
MwoI	GCNNNNNNNGC	2 cut(s)	56, 406
NaeI	GCCGGC	1 cut(s)	86
NdeII	GATC	3 cut(s)	157, 334, 424
NgoMIV	GCCGGC	1 cut(s)	84
NmuCI	GTSAC	1 cut(s)	253
PdiI	GCCGGC	1 cut(s)	86
PdmI	GAANNNNTTC	1 cut(s)	375
PkrI	GCNGC	1 cut(s)	58
PspPI	GGNCC	1 cut(s)	275
PsuI	RGATCY	1 cut(s)	157
RsaI	GTAC	2 cut(s)	65, 457
RsaNI	GTAC	2 cut(s)	64, 456
SatI	GCNGC	1 cut(s)	57
Sau3AI	GATC	3 cut(s)	157, 334, 424
Sau96I	GGNCC	1 cut(s)	275
ScaI	AGTACT	1 cut(s)	457
SduI	GDGCHC	2 cut(s)	291, 448
SfcI	CTRYAG	2 cut(s)	204, 213
SinI	GGWCC	1 cut(s)	275
Sse9I	AATT	3 cut(s)	120, 181, 247
SsiI	CCGC	1 cut(s)	398
TaaI	ACNGT	1 cut(s)	208
TaqI	TCGA	1 cut(s)	315
TaqII	GACCGA	1 cut(s)	157
TasI	AATT	3 cut(s)	120, 181, 247
TatI	WGTACW	1 cut(s)	455
TscAI	CASTG	1 cut(s)	213
TseFI	GTSAC	1 cut(s)	253
TseI	GCWGC	1 cut(s)	56
Tsp45I	GTSAC	1 cut(s)	253
TspDTI	ATGAA	2 cut(s)	341, 384
TspRI	CASTG	1 cut(s)	213
VpaK11BI	GGWCC	1 cut(s)	275
XapI	RAATTY	2 cut(s)	120, 247
XmiI	GTMKAC	1 cut(s)	234
XmnI	GAANNNNTTC	1 cut(s)	375
ZrmI	AGTACT	1 cut(s)	457

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.