Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0005520

Physical Location & Seq

Genomic Coordinates Reverse (-)

13419767 .. 13420183

Gene Structure 417 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0101000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGCAATCTTCTTCAGGGCGTATGATTGTGGACTTTACTGACACCCATTTTCCTCCTCAACACAAAATACATGTCCCCAAAGTTGTGGAGAAAATAATTGATCTTGTTCAGAGCTCCATTCCCTTGGTTCCTAATGATTTCATTGATGTGCGACGAATTGAAGGGATTGAAATTTTGCGCCATCCTTATAGTGAAGCCGCTAAAGCCTACATACGTAATTGTTTTCAAGCTACGAAACGTGGAACATGTGCTATTTGTATGGATGGCTTTGAGGTTGGACGTAACACTAGTCGATTGCCTTGCTTGCATGTTTTTCATGGACCTTGCATTGTTAAGTGGCTGGAGATCGATCTTCGTTGTCCCCTTTGCCGATATTCGTTTAAACTACCTGAACTAGCACCATGGTTTGATGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ACT Pkinase_Tyr

Protein Analysis

138

Amino Acids

15.84

Weight (kDa)

8.19

Isoelectric Point (pI)

52.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	82 - 124	1.2e-14	Ring finger domain
zf-C3HC4_2	PF13923	83 - 123	2e-10	Zinc finger, C3HC4 type (RING finger)
zf-RING_11	PF17123	83 - 110	3.4e-09	RING-like zinc finger
zf-C3HC4	PF00097	83 - 123	1.5e-07	Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX	PF13445	83 - 121	4.1e-06	RING-type zinc-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0005520)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g14210 FvH4_2g14210 FvH4_2g14210 FvH4_2g14210 FvH4_2g14210 FvH4_2g14210 FvH4_2g14210
malus_domestica	MD05G1021200.v1.1 MD10G1021900.v1.1
prunus_persica	Prupe.8G024900_v2.0.a1 Prupe.8G024900_v2.0.a1 Prupe.8G024900_v2.0.a1 Prupe.8G024900_v2.0.a1
pyrus_communis	pycom05g01230 pycom10g01520
rosa_chinensis	RchiOBHm_Chr6g0276351
rosa_laevigata	RLG00000013399
rosa_multiflora	Rmu_sc0001919.1_g000011
rosa_roxburghii	Rroxscaffold_7G00192330
rosa_rugosa	Rorug06G0100600 Rorug06G0100700 Rorug06G0100800 Rorug06G0100900 Rorug06G0101000
rosa_samantha	Rh6AG211700 Rh6BG215900 Rh6CG218200 Rh6DG208200
rosa_wichuraiana	Rw6G018480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	198
AcsI	RAATTY	1 cut(s)	171
AflIII	ACRYGT	2 cut(s)	70, 245
AgsI	TTSAA	3 cut(s)	161, 170, 227
AhlI	ACTAGT	1 cut(s)	287
AluBI	AGCT	2 cut(s)	114, 230
AluI	AGCT	2 cut(s)	114, 230
Alw21I	GWGCWC	1 cut(s)	116
ApoI	RAATTY	1 cut(s)	171
ArsI	GACNNNNNNTTYG	2 cut(s)	57, 89
AspLEI	GCGC	1 cut(s)	180
AspS9I	GGNCC	1 cut(s)	320
AvaII	GGWCC	1 cut(s)	320
BanII	GRGCYC	1 cut(s)	116
Bbv12I	GWGCWC	1 cut(s)	116
BccI	CCATC	2 cut(s)	189, 257
BcgI	CGANNNNNNTGC	2 cut(s)	282, 316
BcuI	ACTAGT	1 cut(s)	287
BfaI	CTAG	2 cut(s)	288, 395
BisI	GCNGC	1 cut(s)	198
BlsI	GCNGC	1 cut(s)	199
Bme18I	GGWCC	1 cut(s)	320
BmgT120I	GGNCC	1 cut(s)	320
BmiI	GGNNCC	1 cut(s)	129
BmsI	GCATC	1 cut(s)	400
BpmI	CTGGAG	1 cut(s)	362
Bsa29I	ATCGAT	1 cut(s)	348
BsaAI	YACGTR	1 cut(s)	215
BsaJI	CCNNGG	2 cut(s)	123, 401
BseCI	ATCGAT	1 cut(s)	348
BseDI	CCNNGG	2 cut(s)	123, 401
BseGI	GGATG	2 cut(s)	181, 268
BseRI	GAGGAG	1 cut(s)	45
BshVI	ATCGAT	1 cut(s)	348
BsiHKAI	GWGCWC	1 cut(s)	116
BslFI	GGGAC	2 cut(s)	59, 345
BsmFI	GGGAC	2 cut(s)	59, 345
Bsp1286I	GDGCHC	1 cut(s)	116
Bsp143I	GATC	3 cut(s)	100, 345, 349
Bsp19I	CCATGG	1 cut(s)	401
BspACI	CCGC	1 cut(s)	198
BspDI	ATCGAT	1 cut(s)	348
BspLI	GGNNCC	1 cut(s)	129
BssECI	CCNNGG	2 cut(s)	123, 401
BssMI	GATC	3 cut(s)	100, 345, 349
BssT1I	CCWWGG	2 cut(s)	123, 401
BstBAI	YACGTR	1 cut(s)	215
BstC8I	GCNNGC	1 cut(s)	305
BstDSI	CCRYGG	1 cut(s)	401
BstF5I	GGATG	2 cut(s)	181, 268
BstHHI	GCGC	1 cut(s)	180
BstKTI	GATC	3 cut(s)	103, 348, 352
BstMBI	GATC	3 cut(s)	100, 345, 349
BstMWI	GCNNNNNNNGC	2 cut(s)	203, 304
BstNSI	RCATGY	3 cut(s)	74, 249, 311
BstSNI	TACGTA	1 cut(s)	215
BstXI	CCANNNNNNTGG	2 cut(s)	85, 124
Bsu15I	ATCGAT	1 cut(s)	348
BsuTUI	ATCGAT	1 cut(s)	348
BtgI	CCRYGG	1 cut(s)	401
BtsCI	GGATG	2 cut(s)	181, 268
Cac8I	GCNNGC	1 cut(s)	305
CfoI	GCGC	1 cut(s)	180
Cfr13I	GGNCC	1 cut(s)	320
ClaI	ATCGAT	1 cut(s)	348
CviAII	CATG	5 cut(s)	71, 246, 308, 317, 402
CviJI	RGCY	6 cut(s)	114, 197, 206, 230, 267, 340
CviKI_1	RGCY	6 cut(s)	114, 197, 206, 230, 267, 340
DpnI	GATC	3 cut(s)	102, 347, 351
DpnII	GATC	3 cut(s)	100, 345, 349
DraI	TTTAAA	1 cut(s)	382
Ecl136II	GAGCTC	1 cut(s)	114
Eco105I	TACGTA	1 cut(s)	215
Eco130I	CCWWGG	2 cut(s)	123, 401
Eco24I	GRGCYC	1 cut(s)	116
Eco47I	GGWCC	1 cut(s)	320
Eco53kI	GAGCTC	1 cut(s)	114
EcoICRI	GAGCTC	1 cut(s)	114
EcoT14I	CCWWGG	2 cut(s)	123, 401
EcoT22I	ATGCAT	1 cut(s)	415
EcoT38I	GRGCYC	1 cut(s)	116
ErhI	CCWWGG	2 cut(s)	123, 401
FaeI	CATG	5 cut(s)	74, 249, 311, 320, 405
FaqI	GGGAC	2 cut(s)	59, 345
FatI	CATG	5 cut(s)	70, 245, 307, 316, 401
Fnu4HI	GCNGC	1 cut(s)	198
FokI	GGATG	2 cut(s)	168, 275
FriOI	GRGCYC	1 cut(s)	116
Fsp4HI	GCNGC	1 cut(s)	198
FspBI	CTAG	2 cut(s)	288, 395
GlaI	GCGC	1 cut(s)	179
GluI	GCNGC	1 cut(s)	198
GsuI	CTGGAG	1 cut(s)	362
HhaI	GCGC	1 cut(s)	180
Hin1II	CATG	5 cut(s)	74, 249, 311, 320, 405
Hin6I	GCGC	1 cut(s)	178
HinP1I	GCGC	1 cut(s)	178
Hpy166II	GTNNAC	1 cut(s)	31
Hpy188I	TCNGA	1 cut(s)	111
Hpy8I	GTNNAC	1 cut(s)	31
Hpy99I	CGWCG	1 cut(s)	156
HpyAV	CCTTC	1 cut(s)	155
HpyCH4IV	ACGT	3 cut(s)	214, 238, 280
HpyCH4V	TGCA	4 cut(s)	4, 307, 327, 413
HpyF10VI	GCNNNNNNNGC	2 cut(s)	203, 304
HpySE526I	ACGT	3 cut(s)	214, 238, 280
Hsp92II	CATG	5 cut(s)	74, 249, 311, 320, 405
HspAI	GCGC	1 cut(s)	178
Kzo9I	GATC	3 cut(s)	100, 345, 349
LmnI	GCTCC	1 cut(s)	119
LpnPI	CCDG	2 cut(s)	326, 402
LweI	GCATC	1 cut(s)	400
MaeI	CTAG	2 cut(s)	288, 395
MaeII	ACGT	3 cut(s)	214, 238, 280
MaeIII	GTNAC	1 cut(s)	281
MalI	GATC	3 cut(s)	102, 347, 351
MboI	GATC	3 cut(s)	100, 345, 349
MboII	GAAGA	2 cut(s)	3, 344
MhlI	GDGCHC	1 cut(s)	116
MluCI	AATT	4 cut(s)	96, 156, 171, 217
MmeI	TCCRAC	1 cut(s)	256
MnlI	CCTC	3 cut(s)	63, 66, 265
Mph1103I	ATGCAT	1 cut(s)	415
MseI	TTAA	2 cut(s)	333, 381
MslI	CAYNNNNRTG	1 cut(s)	146
MssI	GTTTAAAC	1 cut(s)	382
MwoI	GCNNNNNNNGC	2 cut(s)	203, 304
NcoI	CCATGG	1 cut(s)	401
NdeII	GATC	3 cut(s)	100, 345, 349
NlaIII	CATG	5 cut(s)	74, 249, 311, 320, 405
NlaIV	GGNNCC	1 cut(s)	129
NsiI	ATGCAT	1 cut(s)	415
NspI	RCATGY	3 cut(s)	74, 249, 311
PciI	ACATGT	2 cut(s)	70, 245
PkrI	GCNGC	1 cut(s)	199
PmeI	GTTTAAAC	1 cut(s)	382
Ppu21I	YACGTR	1 cut(s)	215
PscI	ACATGT	2 cut(s)	70, 245
Psp124BI	GAGCTC	1 cut(s)	116
PspN4I	GGNNCC	1 cut(s)	129
PspPI	GGNCC	1 cut(s)	320
RseI	CAYNNNNRTG	1 cut(s)	146
SacI	GAGCTC	1 cut(s)	116
SaqAI	TTAA	2 cut(s)	333, 381
SatI	GCNGC	1 cut(s)	198
Sau3AI	GATC	3 cut(s)	100, 345, 349
Sau96I	GGNCC	1 cut(s)	320
SduI	GDGCHC	1 cut(s)	116
SetI	ASST	8 cut(s)	116, 217, 232, 241, 276, 283, 325, 391
SfaNI	GCATC	1 cut(s)	400
SinI	GGWCC	1 cut(s)	320
SmiMI	CAYNNNNRTG	1 cut(s)	146
SnaBI	TACGTA	1 cut(s)	215
SpeI	ACTAGT	1 cut(s)	287
Sse9I	AATT	4 cut(s)	96, 156, 171, 217
SsiI	CCGC	1 cut(s)	198
SspMI	CTAG	2 cut(s)	288, 395
SstI	GAGCTC	1 cut(s)	116
StyI	CCWWGG	2 cut(s)	123, 401
TaiI	ACGT	3 cut(s)	217, 241, 283
TaqI	TCGA	2 cut(s)	292, 348
TasI	AATT	4 cut(s)	96, 156, 171, 217
TauI	GCSGC	1 cut(s)	200
Tru1I	TTAA	2 cut(s)	333, 381
Tru9I	TTAA	2 cut(s)	333, 381
TspDTI	ATGAA	2 cut(s)	130, 305
VpaK11BI	GGWCC	1 cut(s)	320
XapI	RAATTY	1 cut(s)	171
XceI	RCATGY	3 cut(s)	74, 249, 311
XspI	CTAG	2 cut(s)	288, 395
Zsp2I	ATGCAT	1 cut(s)	415

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.