Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0009802

Physical Location & Seq

Genomic Coordinates Reverse (-)

46167919 .. 46169129

Gene Structure 1211 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0310400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGGCTTCTGGCAGTACTGGTAGCAGTGGCACTACTGGAACTGGCTCTCCTTGTGGAGCATGCAAGTTTCTGAGGAGGAAGTGCGCCTCTGATTGCATATTTGCTCCTTACTTTTGCTCCGAACAAGGGCCGGCTAGATTTGCTGCCATTCACAAAGTGTTTGGGGCTAGCAATGTCTCCAAGCTGTTACTTCATGTCCCTGTCCATGATCGATGTGAAGCTGTTGTCACAATTGCCTATGAAGCTCAAGCAAGGATTCGAGACCCCGTTTATGGTTGTGTTGCTCACATTTTTGCCTTGCAGCAACAGGTGGCATGCTTACAAGCACAATTGATGCAAGTGAAGGCACAAGTGGCTCATCAAAACCTTATGAATTCAAGGACCATGGAGAGTCAATGGCAGGGGAATGTGAATGGAGTCACAAACTTTCCAAGTTATCCAAGTTACATGAACCCTATTTCTCCTCAGAGCTCGTTGGATTCCATTGACCACAGCAGCAATGATTTTATGAATTATATGCAGGAGACACAGAGCAGCAGCAGATCAGATGAGTTTTCATTCCAAGCTTGTTCTAAGAAGAGAGCATGCAACAGTACTGACTTGGGTGAGCTTCAAGCACTGGCCCTCAGAATGATGAGGAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004565 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0009505 GO:0015925 GO:0016787 GO:0016798 GO:0030312 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Gal_Lectin Glyco_hydro_35

Protein Analysis

214

Amino Acids

23.41

Weight (kDa)

8.34

Isoelectric Point (pI)

57.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LOB	PF03195	17 - 115	4.1e-36	Lateral organ boundaries (LOB) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009802)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G45130 AT1G45130
fragaria_vesca	FvH4_2g39200 FvH4_2g39200
malus_domestica	MD08G1023600.v1.1 MD15G1021100.v1.1
prunus_persica	Prupe.1G372800_v2.0.a1
pyrus_communis	pycom08g01840 pycom15g01740
rosa_chinensis	RchiOBHm_Chr6g0301851
rosa_laevigata	RLG00000011216 RLG00000011219
rosa_multiflora	Rmu_sc0000407.1_g000009
rosa_roxburghii	Rroxscaffold_7G00166340
rosa_rugosa	Rorug06G0310300 Rorug06G0310400 Rorug06G0310500
rosa_samantha	Rh6BG428900 Rh6CG435500 Rh6DG422300
rosa_wichuraiana	Rw6G036570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	373
AdeI	CACNNNGTG	1 cut(s)	157
AfaI	GTAC	2 cut(s)	16, 595
AfiI	CCNNNNNNNGG	2 cut(s)	126, 272
AgsI	TTSAA	2 cut(s)	378, 614
AloI	GAACNNNNNNTCC	2 cut(s)	31, 63
AluBI	AGCT	6 cut(s)	184, 221, 245, 471, 566, 610
AluI	AGCT	6 cut(s)	184, 221, 245, 471, 566, 610
Alw21I	GWGCWC	1 cut(s)	473
Alw26I	GTCTC	3 cut(s)	181, 255, 518
AoxI	GGCC	2 cut(s)	128, 621
ApeKI	GCWGC	5 cut(s)	143, 301, 495, 534, 537
ApoI	RAATTY	1 cut(s)	373
AspLEI	GCGC	1 cut(s)	86
AspS9I	GGNCC	3 cut(s)	128, 381, 622
AsuHPI	GGTGA	1 cut(s)	617
AsuNHI	GCTAGC	1 cut(s)	167
AvaII	GGWCC	1 cut(s)	381
BanII	GRGCYC	1 cut(s)	473
Bbv12I	GWGCWC	1 cut(s)	473
BbvI	GCAGC	5 cut(s)	130, 313, 507, 546, 549
BcoDI	GTCTC	3 cut(s)	181, 255, 518
BfaI	CTAG	2 cut(s)	135, 168
BisI	GCNGC	5 cut(s)	144, 302, 496, 535, 538
BlsI	GCNGC	5 cut(s)	145, 303, 497, 536, 539
BmcAI	AGTACT	2 cut(s)	16, 595
Bme18I	GGWCC	1 cut(s)	381
BmgT120I	GGNCC	3 cut(s)	128, 381, 622
BmsI	GCATC	1 cut(s)	324
BmtI	GCTAGC	1 cut(s)	171
BpuEI	CTTGAG	1 cut(s)	231
Bsa29I	ATCGAT	1 cut(s)	211
BsaI	GGTCTC	1 cut(s)	255
BsaJI	CCNNGG	1 cut(s)	384
BsaXI	ACNNNNNCTCC	4 cut(s)	31, 61, 101, 131
Bsc4I	CCNNNNNNNGG	2 cut(s)	126, 272
Bse118I	RCCGGY	1 cut(s)	130
Bse1I	ACTGG	4 cut(s)	22, 40, 46, 624
Bse3DI	GCAATG	2 cut(s)	178, 505
BseCI	ATCGAT	1 cut(s)	211
BseDI	CCNNGG	1 cut(s)	384
BseLI	CCNNNNNNNGG	2 cut(s)	126, 272
BseMI	GCAATG	2 cut(s)	178, 505
BseMII	CTCAG	3 cut(s)	62, 479, 640
BseNI	ACTGG	4 cut(s)	22, 40, 46, 624
BseRI	GAGGAG	2 cut(s)	88, 453
BseXI	GCAGC	5 cut(s)	130, 313, 507, 546, 549
BshFI	GGCC	2 cut(s)	130, 623
BshVI	ATCGAT	1 cut(s)	211
BsiHKAI	GWGCWC	1 cut(s)	473
BsiSI	CCGG	1 cut(s)	131
BslFI	GGGAC	1 cut(s)	182
BslI	CCNNNNNNNGG	2 cut(s)	126, 272
BsmAI	GTCTC	3 cut(s)	181, 255, 518
BsmFI	GGGAC	1 cut(s)	182
BsnI	GGCC	2 cut(s)	130, 623
Bso31I	GGTCTC	1 cut(s)	255
Bsp1286I	GDGCHC	1 cut(s)	473
Bsp143I	GATC	2 cut(s)	208, 542
Bsp19I	CCATGG	1 cut(s)	384
BspANI	GGCC	2 cut(s)	130, 623
BspCNI	CTCAG	3 cut(s)	63, 478, 639
BspDI	ATCGAT	1 cut(s)	211
BspOI	GCTAGC	1 cut(s)	171
BspTNI	GGTCTC	1 cut(s)	255
BsrDI	GCAATG	2 cut(s)	178, 505
BsrFI	RCCGGY	1 cut(s)	130
BsrI	ACTGG	4 cut(s)	22, 40, 46, 624
BssAI	RCCGGY	1 cut(s)	130
BssECI	CCNNGG	1 cut(s)	384
BssMI	GATC	2 cut(s)	208, 542
BssT1I	CCWWGG	1 cut(s)	384
Bst4CI	ACNGT	1 cut(s)	593
Bst6I	CTCTTC	1 cut(s)	572
BstC8I	GCNNGC	5 cut(s)	61, 132, 169, 316, 586
BstDEI	CTNAG	4 cut(s)	71, 465, 573, 626
BstDSI	CCRYGG	1 cut(s)	384
BstHHI	GCGC	1 cut(s)	86
BstKTI	GATC	2 cut(s)	211, 545
BstMAI	GTCTC	3 cut(s)	181, 255, 518
BstMBI	GATC	2 cut(s)	208, 542
BstMWI	GCNNNNNNNGC	3 cut(s)	140, 242, 353
BstNSI	RCATGY	3 cut(s)	63, 318, 588
BstV1I	GCAGC	5 cut(s)	130, 313, 507, 546, 549
Bsu15I	ATCGAT	1 cut(s)	211
BsuRI	GGCC	2 cut(s)	130, 623
BsuTUI	ATCGAT	1 cut(s)	211
BtgI	CCRYGG	1 cut(s)	384
BtsI	GCAGTG	1 cut(s)	31
BtsIMutI	CAGTG	2 cut(s)	31, 617
Cac8I	GCNNGC	5 cut(s)	61, 132, 169, 316, 586
CfoI	GCGC	1 cut(s)	86
Cfr10I	RCCGGY	1 cut(s)	130
Cfr13I	GGNCC	3 cut(s)	128, 381, 622
ClaI	ATCGAT	1 cut(s)	211
Csp6I	GTAC	2 cut(s)	15, 594
CviAII	CATG	7 cut(s)	60, 194, 206, 315, 385, 448, 585
CviQI	GTAC	2 cut(s)	15, 594
DdeI	CTNAG	4 cut(s)	71, 465, 573, 626
DpnI	GATC	2 cut(s)	210, 544
DpnII	GATC	2 cut(s)	208, 542
DraIII	CACNNNGTG	1 cut(s)	157
Eam1104I	CTCTTC	1 cut(s)	572
EarI	CTCTTC	1 cut(s)	572
Ecl136II	GAGCTC	1 cut(s)	471
Eco130I	CCWWGG	1 cut(s)	384
Eco24I	GRGCYC	1 cut(s)	473
Eco31I	GGTCTC	1 cut(s)	255
Eco47I	GGWCC	1 cut(s)	381
Eco53kI	GAGCTC	1 cut(s)	471
EcoICRI	GAGCTC	1 cut(s)	471
EcoRI	GAATTC	1 cut(s)	373
EcoT14I	CCWWGG	1 cut(s)	384
EcoT38I	GRGCYC	1 cut(s)	473
ErhI	CCWWGG	1 cut(s)	384
FaeI	CATG	7 cut(s)	63, 197, 209, 318, 388, 451, 588
FaqI	GGGAC	1 cut(s)	182
FatI	CATG	7 cut(s)	59, 193, 205, 314, 384, 447, 584
Fnu4HI	GCNGC	5 cut(s)	144, 302, 496, 535, 538
FriOI	GRGCYC	1 cut(s)	473
Fsp4HI	GCNGC	5 cut(s)	144, 302, 496, 535, 538
FspBI	CTAG	2 cut(s)	135, 168
GlaI	GCGC	1 cut(s)	85
GluI	GCNGC	5 cut(s)	144, 302, 496, 535, 538
HaeIII	GGCC	2 cut(s)	130, 623
HapII	CCGG	1 cut(s)	131
HhaI	GCGC	1 cut(s)	86
Hin1II	CATG	7 cut(s)	63, 197, 209, 318, 388, 451, 588
Hin6I	GCGC	1 cut(s)	84
HinP1I	GCGC	1 cut(s)	84
HindIII	AAGCTT	1 cut(s)	564
HinfI	GANTC	4 cut(s)	256, 391, 417, 479
HpaII	CCGG	1 cut(s)	131
HphI	GGTGA	1 cut(s)	617
Hpy188I	TCNGA	6 cut(s)	72, 91, 121, 468, 547, 629
Hpy188III	TCNNGA	1 cut(s)	260
HpyAV	CCTTC	1 cut(s)	337
HpyCH4III	ACNGT	1 cut(s)	593
HpyCH4V	TGCA	6 cut(s)	63, 96, 301, 337, 520, 588
HpyF10VI	GCNNNNNNNGC	3 cut(s)	140, 242, 353
HpyF3I	CTNAG	4 cut(s)	71, 465, 573, 626
Hsp92II	CATG	7 cut(s)	63, 197, 209, 318, 388, 451, 588
HspAI	GCGC	1 cut(s)	84
KroI	GCCGGC	1 cut(s)	130
KroNI	GCCGGC	1 cut(s)	132
Kzo9I	GATC	2 cut(s)	208, 542
LmnI	GCTCC	3 cut(s)	56, 109, 122
LpnPI	CCDG	9 cut(s)	3, 21, 27, 144, 213, 293, 386, 506, 605
Lsp1109I	GCAGC	5 cut(s)	130, 313, 507, 546, 549
LweI	GCATC	1 cut(s)	324
MaeI	CTAG	2 cut(s)	135, 168
MaeIII	GTNAC	4 cut(s)	186, 226, 418, 443
MalI	GATC	2 cut(s)	210, 544
MboI	GATC	2 cut(s)	208, 542
MboII	GAAGA	1 cut(s)	589
MfeI	CAATTG	2 cut(s)	231, 329
MhlI	GDGCHC	1 cut(s)	473
MluCI	AATT	4 cut(s)	231, 329, 373, 511
MlyI	GAGTC	2 cut(s)	400, 426
MmeI	TCCRAC	1 cut(s)	456
MnlI	CCTC	6 cut(s)	66, 69, 97, 474, 630, 635
MroNI	GCCGGC	1 cut(s)	130
MspI	CCGG	1 cut(s)	131
MunI	CAATTG	2 cut(s)	231, 329
MwoI	GCNNNNNNNGC	3 cut(s)	140, 242, 353
NaeI	GCCGGC	1 cut(s)	132
NcoI	CCATGG	1 cut(s)	384
NdeII	GATC	2 cut(s)	208, 542
NgoMIV	GCCGGC	1 cut(s)	130
NheI	GCTAGC	1 cut(s)	167
NlaIII	CATG	7 cut(s)	63, 197, 209, 318, 388, 451, 588
NmuCI	GTSAC	2 cut(s)	226, 418
NspI	RCATGY	3 cut(s)	63, 318, 588
PaeI	GCATGC	3 cut(s)	63, 318, 588
PdiI	GCCGGC	1 cut(s)	132
PfeI	GAWTC	2 cut(s)	256, 479
PkrI	GCNGC	5 cut(s)	145, 303, 497, 536, 539
PleI	GAGTC	2 cut(s)	399, 425
PpsI	GAGTC	2 cut(s)	399, 425
Psp124BI	GAGCTC	1 cut(s)	473
PspPI	GGNCC	3 cut(s)	128, 381, 622
RsaI	GTAC	2 cut(s)	16, 595
RsaNI	GTAC	2 cut(s)	15, 594
SacI	GAGCTC	1 cut(s)	473
SatI	GCNGC	5 cut(s)	144, 302, 496, 535, 538
Sau3AI	GATC	2 cut(s)	208, 542
Sau96I	GGNCC	3 cut(s)	128, 381, 622
ScaI	AGTACT	2 cut(s)	16, 595
SchI	GAGTC	2 cut(s)	400, 426
SduI	GDGCHC	1 cut(s)	473
SetI	ASST	8 cut(s)	186, 223, 247, 312, 369, 473, 568, 612
SfaNI	GCATC	1 cut(s)	324
SinI	GGWCC	1 cut(s)	381
SmlI	CTYRAG	1 cut(s)	246
SmoI	CTYRAG	1 cut(s)	246
SphI	GCATGC	3 cut(s)	63, 318, 588
Sse9I	AATT	4 cut(s)	231, 329, 373, 511
SspMI	CTAG	2 cut(s)	135, 168
SstI	GAGCTC	1 cut(s)	473
StyI	CCWWGG	1 cut(s)	384
TaaI	ACNGT	1 cut(s)	593
TaqI	TCGA	2 cut(s)	211, 259
TasI	AATT	4 cut(s)	231, 329, 373, 511
TatI	WGTACW	2 cut(s)	14, 593
TfiI	GAWTC	2 cut(s)	256, 479
TscAI	CASTG	2 cut(s)	31, 624
TseFI	GTSAC	2 cut(s)	226, 418
TseI	GCWGC	5 cut(s)	143, 301, 495, 534, 537
Tsp45I	GTSAC	2 cut(s)	226, 418
TspDTI	ATGAA	6 cut(s)	182, 255, 386, 464, 524, 546
TspRI	CASTG	2 cut(s)	31, 624
VpaK11BI	GGWCC	1 cut(s)	381
XapI	RAATTY	1 cut(s)	373
XceI	RCATGY	3 cut(s)	63, 318, 588
XspI	CTAG	2 cut(s)	135, 168
ZrmI	AGTACT	2 cut(s)	16, 595

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.