Rorug06G0353400

Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in chloroplasts and mitochondria. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho- Glu-tRNA(Gln)

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Forward (+)
50203287 .. 50204504
1218 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0353400.1

Sequence Viewer

Length: 831 bp
ATGTCCAATCCAAAGTTCCAATCCACTCCCCGGTCTCCATCTTCAATCGAATGCGCTTACATGGAGTTGAACCCGATAACCGCACCTTCCCTTTCCTCCTTCAATTCTTCAAATCCATTCCTTACTTCCAATCAGGAAAACGAATCCATGCCCAAATTCTTCTCTTCGGATGCGTATGCGAAAGTGGGTTTGGTTGATGCTGCACGAGATGTGTTCAATGAAATGCCCAAGAGAAATGTGATTTCATGGGGTTGTATGATCAAGGCGTATGTAATGTGTGGTGGTTATAATTATAAGGAAGCACTTGCCTTGTTTCGTGAGATGCAGATGTTGGATAGTGTGAGGCCTAATGAGTTCACCATGTCGAGCATACTTTTGTCTTGTGGAAGATTGGGTGCACTTGAGCATGGGAAATGGCCGGGTAAAGAGTGTTTTAGGGGGATGGATGAGGAGTTTGGTACTAAGACTTTGATACAGCACTATGGTTGCATTGTCGACCTTTATGGAAGAGCCGGCCGGGCTGATTCCGACGCATGGAAAGTGGTGATATCCATGCCAATGGAGCCTGATGTGCTTGTGTGGGGAGCTCTACTAAGTGGAGCTAGGATGCACAGGGACATAGAAACAAGTGAGATTGCGCTGAACAAGCTAATTCAGTTGGATCCAACTAATAGTGCTGCATATGTACTTTTATCGAATGTGTACGCAAAAATGGGGAAATGGAGTGAAGTAAGACGTGTGAGAGATGTTATGGAGGAAAGCGGGATCAAGAAAGTTCCCGGCTGTACTTTGGTCGAGGTGGGTAAGACGTGTCTATTGAAGATTTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

276

Amino Acids

30.83

Weight (kDa)

6.83

Isoelectric Point (pI)

50.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 78 - 128 4.1e-06 PPR repeat family
E_motif PF20431 204 - 266 9.8e-24 E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0015435)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 288, 294
AccI GTMKAC 1 cut(s) 495
AciI CCGC 2 cut(s) 81, 762
AclWI GGATC 3 cut(s) 656, 669, 773
AcoI YGGCCR 2 cut(s) 416, 514
AcsI RAATTY 1 cut(s) 155
AfaI GTAC 4 cut(s) 460, 687, 704, 787
AfiI CCNNNNNNNGG 2 cut(s) 30, 534
AflIII ACRYGT 2 cut(s) 736, 809
AgsI TTSAA 6 cut(s) 45, 70, 103, 111, 217, 820
AjiI CACGTC 2 cut(s) 737, 810
AjuI GAANNNNNNNTTGG 3 cut(s) 31, 173, 205
AluBI AGCT 3 cut(s) 587, 602, 649
AluI AGCT 3 cut(s) 587, 602, 649
Alw21I GWGCWC 2 cut(s) 400, 589
Alw26I GTCTC 1 cut(s) 39
Alw44I GTGCAC 1 cut(s) 396
AlwI GGATC 3 cut(s) 656, 669, 773
AoxI GGCC 3 cut(s) 344, 416, 514
ApaLI GTGCAC 1 cut(s) 396
ApeKI GCWGC 2 cut(s) 200, 677
ApoI RAATTY 1 cut(s) 155
AspLEI GCGC 2 cut(s) 56, 640
AsuC2I CCSGG 4 cut(s) 31, 420, 518, 780
AsuHPI GGTGA 2 cut(s) 349, 556
BaeGI GKGCMC 1 cut(s) 400
BamHI GGATCC 1 cut(s) 661
BanII GRGCYC 1 cut(s) 589
BauI CACGAG 1 cut(s) 204
Bbv12I GWGCWC 2 cut(s) 400, 589
BbvI GCAGC 2 cut(s) 187, 664
BccI CCATC 2 cut(s) 46, 436
BclI TGATCA 1 cut(s) 258
BcnI CCSGG 4 cut(s) 31, 420, 518, 780
BcoDI GTCTC 1 cut(s) 39
BfaI CTAG 1 cut(s) 603
BglI GCCNNNNNGGC 1 cut(s) 518
BisI GCNGC 2 cut(s) 201, 678
BlsI GCNGC 2 cut(s) 202, 679
Bme1390I CCNGG 4 cut(s) 31, 420, 518, 780
BmgBI CACGTC 2 cut(s) 737, 810
BmiI GGNNCC 2 cut(s) 564, 663
BmrFI CCNGG 4 cut(s) 31, 420, 518, 780
BmsI GCATC 4 cut(s) 160, 187, 312, 597
BpuEI CTTGAG 1 cut(s) 422
BpuMI CCSGG 4 cut(s) 31, 420, 518, 780
BsaI GGTCTC 1 cut(s) 39
BsaJI CCNNGG 1 cut(s) 29
Bsc4I CCNNNNNNNGG 2 cut(s) 30, 534
Bse118I RCCGGY 1 cut(s) 512
BseDI CCNNGG 1 cut(s) 29
BseGI GGATG 4 cut(s) 175, 447, 451, 612
BseLI CCNNNNNNNGG 2 cut(s) 30, 534
BseRI GAGGAG 1 cut(s) 464
BseSI GKGCMC 1 cut(s) 400
BseX3I CGGCCG 1 cut(s) 514
BseXI GCAGC 2 cut(s) 187, 664
BsgI GTGCAG 1 cut(s) 186
Bsh1285I CGRYCG 1 cut(s) 517
BshFI GGCC 3 cut(s) 346, 418, 516
BsiEI CGRYCG 1 cut(s) 517
BsiHKAI GWGCWC 2 cut(s) 400, 589
BsiSI CCGG 5 cut(s) 31, 419, 513, 517, 780
BslFI GGGAC 1 cut(s) 629
BslI CCNNNNNNNGG 2 cut(s) 30, 534
BsmAI GTCTC 1 cut(s) 39
BsmFI GGGAC 1 cut(s) 629
BsmI GAATGC 1 cut(s) 56
BsnI GGCC 3 cut(s) 346, 418, 516
Bso31I GGTCTC 1 cut(s) 39
Bsp1286I GDGCHC 2 cut(s) 400, 589
Bsp143I GATC 3 cut(s) 258, 661, 765
BspACI CCGC 2 cut(s) 81, 762
BspANI GGCC 3 cut(s) 346, 418, 516
BspLI GGNNCC 2 cut(s) 564, 663
BspPI GGATC 3 cut(s) 656, 669, 773
BspQI GCTCTTC 1 cut(s) 502
BspTNI GGTCTC 1 cut(s) 39
BsrFI RCCGGY 1 cut(s) 512
BssAI RCCGGY 1 cut(s) 512
BssECI CCNNGG 1 cut(s) 29
BssMI GATC 3 cut(s) 258, 661, 765
BssSI CACGAG 1 cut(s) 204
Bst2BI CACGAG 1 cut(s) 204
Bst6I CTCTTC 2 cut(s) 169, 502
BstC8I GCNNGC 1 cut(s) 514
BstDEI CTNAG 2 cut(s) 462, 593
BstF5I GGATG 4 cut(s) 175, 447, 451, 612
BstHHI GCGC 2 cut(s) 56, 640
BstKTI GATC 3 cut(s) 261, 664, 768
BstMAI GTCTC 1 cut(s) 39
BstMBI GATC 3 cut(s) 258, 661, 765
BstMCI CGRYCG 1 cut(s) 517
BstMWI GCNNNNNNNGC 4 cut(s) 518, 562, 571, 646
BstSCI CCNGG 4 cut(s) 29, 418, 516, 778
BstSLI GKGCMC 1 cut(s) 400
BstV1I GCAGC 2 cut(s) 187, 664
BstX2I RGATCY 1 cut(s) 661
BstXI CCANNNNNNTGG 1 cut(s) 559
BstYI RGATCY 1 cut(s) 661
BstZI CGGCCG 1 cut(s) 514
BsuRI GGCC 3 cut(s) 346, 418, 516
BtrI CACGTC 2 cut(s) 737, 810
BtsCI GGATG 4 cut(s) 175, 447, 451, 612
Cac8I GCNNGC 1 cut(s) 514
CfoI GCGC 2 cut(s) 56, 640
Cfr10I RCCGGY 1 cut(s) 512
CseI GACGC 1 cut(s) 539
Csp6I GTAC 4 cut(s) 459, 686, 703, 786
CviAII CATG 7 cut(s) 61, 148, 246, 361, 407, 534, 553
CviQI GTAC 4 cut(s) 459, 686, 703, 786
DdeI CTNAG 2 cut(s) 462, 593
DpnI GATC 3 cut(s) 260, 663, 767
DpnII GATC 3 cut(s) 258, 661, 765
EaeI YGGCCR 2 cut(s) 416, 514
EagI CGGCCG 1 cut(s) 514
Eam1104I CTCTTC 2 cut(s) 169, 502
EarI CTCTTC 2 cut(s) 169, 502
Ecl136II GAGCTC 1 cut(s) 587
EclXI CGGCCG 1 cut(s) 514
Eco147I AGGCCT 1 cut(s) 346
Eco24I GRGCYC 1 cut(s) 589
Eco31I GGTCTC 1 cut(s) 39
Eco32I GATATC 1 cut(s) 549
Eco52I CGGCCG 1 cut(s) 514
Eco53kI GAGCTC 1 cut(s) 587
EcoICRI GAGCTC 1 cut(s) 587
EcoRV GATATC 1 cut(s) 549
EcoT38I GRGCYC 1 cut(s) 589
FaeI CATG 7 cut(s) 64, 151, 249, 364, 410, 537, 556
FaqI GGGAC 1 cut(s) 629
FatI CATG 7 cut(s) 60, 147, 245, 360, 406, 533, 552
FauI CCCGC 1 cut(s) 755
FauNDI CATATG 1 cut(s) 682
FbaI TGATCA 1 cut(s) 258
FblI GTMKAC 1 cut(s) 495
Fnu4HI GCNGC 2 cut(s) 201, 678
FokI GGATG 4 cut(s) 182, 454, 458, 619
FriOI GRGCYC 1 cut(s) 589
Fsp4HI GCNGC 2 cut(s) 201, 678
FspBI CTAG 1 cut(s) 603
GlaI GCGC 2 cut(s) 55, 639
GluI GCNGC 2 cut(s) 201, 678
HaeIII GGCC 3 cut(s) 346, 418, 516
HapII CCGG 5 cut(s) 31, 419, 513, 517, 780
HgaI GACGC 1 cut(s) 539
HhaI GCGC 2 cut(s) 56, 640
Hin1II CATG 7 cut(s) 64, 151, 249, 364, 410, 537, 556
Hin6I GCGC 2 cut(s) 54, 638
HinP1I GCGC 2 cut(s) 54, 638
HincII GTYRAC 1 cut(s) 496
HindII GTYRAC 1 cut(s) 496
HinfI GANTC 2 cut(s) 143, 524
HpaII CCGG 5 cut(s) 31, 419, 513, 517, 780
HphI GGTGA 2 cut(s) 349, 556
Hpy166II GTNNAC 4 cut(s) 357, 398, 496, 703
Hpy188I TCNGA 2 cut(s) 169, 529
Hpy188III TCNNGA 3 cut(s) 134, 317, 769
Hpy8I GTNNAC 4 cut(s) 357, 398, 496, 703
Hpy99I CGWCG 1 cut(s) 533
HpyAV CCTTC 2 cut(s) 96, 109
HpyCH4IV ACGT 2 cut(s) 736, 809
HpyCH4V TGCA 6 cut(s) 203, 325, 398, 489, 610, 680
HpyF10VI GCNNNNNNNGC 4 cut(s) 518, 562, 571, 646
HpyF3I CTNAG 2 cut(s) 462, 593
HpySE526I ACGT 2 cut(s) 736, 809
Hsp92II CATG 7 cut(s) 64, 151, 249, 364, 410, 537, 556
HspAI GCGC 2 cut(s) 54, 638
KroI GCCGGC 1 cut(s) 512
KroNI GCCGGC 1 cut(s) 514
Ksp22I TGATCA 1 cut(s) 258
Kzo9I GATC 3 cut(s) 258, 661, 765
LguI GCTCTTC 1 cut(s) 502
LmnI GCTCC 3 cut(s) 562, 584, 599
LpnPI CCDG 8 cut(s) 44, 119, 432, 526, 530, 579, 598, 793
Lsp1109I GCAGC 2 cut(s) 187, 664
LweI GCATC 4 cut(s) 160, 187, 312, 597
MaeI CTAG 1 cut(s) 603
MaeII ACGT 2 cut(s) 736, 809
MalI GATC 3 cut(s) 260, 663, 767
MboI GATC 3 cut(s) 258, 661, 765
MboII GAAGA 6 cut(s) 33, 99, 151, 156, 399, 519
MflI RGATCY 1 cut(s) 661
MhlI GDGCHC 2 cut(s) 400, 589
MluCI AATT 4 cut(s) 103, 155, 289, 651
MmeI TCCRAC 4 cut(s) 312, 552, 639, 689
MnlI CCTC 5 cut(s) 106, 336, 442, 748, 790
MroNI GCCGGC 1 cut(s) 512
MslI CAYNNNNRTG 1 cut(s) 557
MspI CCGG 5 cut(s) 31, 419, 513, 517, 780
MspR9I CCNGG 4 cut(s) 31, 420, 518, 780
Mva1269I GAATGC 1 cut(s) 56
MwoI GCNNNNNNNGC 4 cut(s) 518, 562, 571, 646
NaeI GCCGGC 1 cut(s) 514
NciI CCSGG 4 cut(s) 31, 420, 518, 780
NdeI CATATG 1 cut(s) 682
NdeII GATC 3 cut(s) 258, 661, 765
NgoMIV GCCGGC 1 cut(s) 512
NlaIII CATG 7 cut(s) 64, 151, 249, 364, 410, 537, 556
NlaIV GGNNCC 2 cut(s) 564, 663
PceI AGGCCT 1 cut(s) 346
PciSI GCTCTTC 1 cut(s) 502
PctI GAATGC 1 cut(s) 56
PdiI GCCGGC 1 cut(s) 514
PfeI GAWTC 2 cut(s) 143, 524
PkrI GCNGC 2 cut(s) 202, 679
PsiI TTATAA 2 cut(s) 288, 294
Psp124BI GAGCTC 1 cut(s) 589
PspN4I GGNNCC 2 cut(s) 564, 663
PsuI RGATCY 1 cut(s) 661
RsaI GTAC 4 cut(s) 460, 687, 704, 787
RsaNI GTAC 4 cut(s) 459, 686, 703, 786
RseI CAYNNNNRTG 1 cut(s) 557
SacI GAGCTC 1 cut(s) 589
SalI GTCGAC 1 cut(s) 494
SapI GCTCTTC 1 cut(s) 502
SatI GCNGC 2 cut(s) 201, 678
Sau3AI GATC 3 cut(s) 258, 661, 765
ScrFI CCNGG 4 cut(s) 31, 420, 518, 780
SduI GDGCHC 2 cut(s) 400, 589
SetI ASST 8 cut(s) 88, 501, 589, 604, 651, 739, 801, 812
SfaNI GCATC 4 cut(s) 160, 187, 312, 597
SmiMI CAYNNNNRTG 1 cut(s) 557
SmlI CTYRAG 1 cut(s) 401
SmoI CTYRAG 1 cut(s) 401
Sse9I AATT 4 cut(s) 103, 155, 289, 651
SseBI AGGCCT 1 cut(s) 346
SsiI CCGC 2 cut(s) 81, 762
SspMI CTAG 1 cut(s) 603
SstI GAGCTC 1 cut(s) 589
StuI AGGCCT 1 cut(s) 346
StyD4I CCNGG 4 cut(s) 29, 418, 516, 778
TaiI ACGT 2 cut(s) 739, 812
TaqI TCGA 5 cut(s) 48, 365, 495, 695, 795
TasI AATT 4 cut(s) 103, 155, 289, 651
TatI WGTACW 2 cut(s) 685, 785
TfiI GAWTC 2 cut(s) 143, 524
TseI GCWGC 2 cut(s) 200, 677
TspDTI ATGAA 2 cut(s) 234, 234
VneI GTGCAC 1 cut(s) 396
XapI RAATTY 1 cut(s) 155
XmiI GTMKAC 1 cut(s) 495
XspI CTAG 1 cut(s) 603
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.