Rorug06G0446900

flavin-containing monooxygenase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0011359
Physical Location & Seq
Reverse (-)
57757514 .. 57763041
5528 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0446900.1

Sequence Viewer

Length: 1053 bp
ATGGATTACAGCGACACAGACGATTCGCTGCGCCGGAGGTCCAGGAAGATCGCTTATCTCGGCGAATCCGCTCGCAGGCAATTTGAATCGCCAAGTGAACGTTCCTATGGATTAATGGGAGAATTGAACTATATGCAGGAGGAAGATATTCGGCTAGAGGCGACACGATCTAGATTGTCGAATGCTTTGAAGAGGCATGGTGATTTAGCCGAGCGTATGTCTAGGGATTCTGACAAGACAATTTACGAGCGTCTACATAAGGAATTTGAAGCTGCACGGGCTTTGCAAACTCAAGAGATTTATTTAGATGGCGAACAATGGAATGATGGACTGCTAGCCACAATAAGAGAACGGGTTCACATGGAGGTAGACAGAAAGGCGATGGCAAGAGATGTAAGCACGTTGCACAGTCCACATTTCCAAGAGAGAATCACTTACAAAGTTGGGGATAAGGTGATATGTTGTTTAGAAGGAGCAAGAATTGGCATACTGTATGAGACATCTTATGCGGGAGAACCTTGTGATTTATACCATTTAGTACTTGAGAGCAAGTCATTTCTAGAGAAGATGACTGTCCTTGAACACACCATTCCATTTTTTTTGCCACTAAGAGAAGCGGAAAATGATCTTCTTTCCTCCAATGCTATGAAATTTATAGATCATGTTGGAGAGCTTTTGCAGGCTTATGTGGACAGAAAGGAACAGGTTCGGCTCGTCAAGGAGTTATATGGGAACCAGATTAAAGAAATTCACTGTAGCCTGACCTACCATTTGATTTTGTTTGCAATTGCTGATTTTGGCTGCAAGGTAATTGTTAAGCTTAAATATGCAGATCTTGTTTCCGTACTTCCAACTAATGTCAGTGTGGTAGCATGGCCCATTCAAATCCGGAGATTCAGTCTAAATACGTCAACCATGAATACACTAGAAGGTCCAACTTGCCTCCTCTATGCAGAGGATGCCTTGCGAACTATGAGCTTACCTGAAGCATATGCAGAGATTGTCTTGAATTTGCCGCAAGCTCTTCGGGAAATGCATGAGGAGTCCCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0004497 GO:0008150 GO:0008152 GO:0016491 GO:0055114
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FMO-like K_oxygenase

Protein Analysis

350

Amino Acids

40.39

Weight (kDa)

5.57

Isoelectric Point (pI)

50.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CENP-O PF09496 145 - 343 1.7e-22 Cenp-O kinetochore centromere component
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011359)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G07800
fragaria_vesca FvH4_5g14390
malus_domestica MD06G1199100.v1.1 MD14G1206500.v1.1 MD14G1206800.v1.1 MD14G1207200.v1.1
prunus_persica Prupe.5G199900_v2.0.a1
pyrus_communis pycom14g17100 pycom14g17110 pycom14g17120
rosa_chinensis RchiOBHm_Chr7g0182301
rosa_laevigata RLG00000005134
rosa_multiflora Rmu_sc0000003.1_g000007
rosa_roxburghii Rroxscaffold_3G00271340
rosa_rugosa Rorug06G0446900
rosa_samantha Rh7AG049800 Rh7BG049900 Rh7CG051200 Rh7DG049100
rosa_wichuraiana Rw7G004090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 71
AccI GTMKAC 2 cut(s) 253, 369
AccIII TCCGGA 1 cut(s) 888
AciI CCGC 4 cut(s) 69, 509, 617, 1016
AclI AACGTT 1 cut(s) 100
AcsI RAATTY 4 cut(s) 263, 650, 747, 1009
AcuI CTGAAG 1 cut(s) 1005
AfaI GTAC 2 cut(s) 540, 846
AfiI CCNNNNNNNGG 1 cut(s) 75
AgsI TTSAA 7 cut(s) 86, 127, 190, 269, 581, 884, 1009
AjnI CCWGG 1 cut(s) 41
AjuI GAANNNNNNNTTGG 2 cut(s) 85, 117
AluBI AGCT 5 cut(s) 272, 673, 820, 978, 1022
AluI AGCT 5 cut(s) 272, 673, 820, 978, 1022
Alw26I GTCTC 1 cut(s) 491
Aor13HI TCCGGA 1 cut(s) 888
AoxI GGCC 1 cut(s) 875
ApeKI GCWGC 3 cut(s) 28, 272, 801
ApoI RAATTY 4 cut(s) 263, 650, 747, 1009
ArsI GACNNNNNNTTYG 2 cut(s) 754, 786
AseI ATTAAT 1 cut(s) 113
Asp700I GAANNNNTTC 3 cut(s) 147, 354, 705
AspLEI GCGC 1 cut(s) 33
AspS9I GGNCC 3 cut(s) 39, 876, 932
AsuHPI GGTGA 2 cut(s) 212, 466
AsuNHI GCTAGC 1 cut(s) 334
AvaII GGWCC 2 cut(s) 39, 932
BbvI GCAGC 3 cut(s) 15, 259, 788
BccI CCATC 3 cut(s) 302, 320, 376
BcgI CGANNNNNNTGC 2 cut(s) 1007, 1041
BciT130I CCWGG 1 cut(s) 43
BcoDI GTCTC 1 cut(s) 491
BfaI CTAG 6 cut(s) 155, 171, 222, 335, 560, 926
BfmI CTRYAG 1 cut(s) 754
BglII AGATCT 1 cut(s) 832
BisI GCNGC 4 cut(s) 29, 273, 802, 1016
BlsI GCNGC 4 cut(s) 30, 274, 803, 1017
BmcAI AGTACT 1 cut(s) 540
Bme1390I CCNGG 1 cut(s) 43
Bme18I GGWCC 2 cut(s) 39, 932
BmgT120I GGNCC 3 cut(s) 39, 876, 932
BmiI GGNNCC 1 cut(s) 734
BmrFI CCNGG 1 cut(s) 43
BmsI GCATC 1 cut(s) 949
BmtI GCTAGC 1 cut(s) 338
BpuEI CTTGAG 2 cut(s) 276, 563
BsaWI WCCGGW 1 cut(s) 888
BsaXI ACNNNNNCTCC 2 cut(s) 883, 913
Bsc4I CCNNNNNNNGG 1 cut(s) 75
BseAI TCCGGA 1 cut(s) 888
BseBI CCWGG 1 cut(s) 43
BseGI GGATG 1 cut(s) 964
BseLI CCNNNNNNNGG 1 cut(s) 75
BseRI GAGGAG 1 cut(s) 935
BseXI GCAGC 3 cut(s) 15, 259, 788
BsgI GTGCAG 1 cut(s) 258
BshFI GGCC 1 cut(s) 877
BsiSI CCGG 2 cut(s) 34, 889
BslFI GGGAC 1 cut(s) 1030
BslI CCNNNNNNNGG 1 cut(s) 75
BsmAI GTCTC 1 cut(s) 491
BsmFI GGGAC 1 cut(s) 1030
BsmI GAATGC 1 cut(s) 187
BsnI GGCC 1 cut(s) 877
Bsp13I TCCGGA 1 cut(s) 888
Bsp143I GATC 5 cut(s) 48, 167, 625, 658, 832
BspACI CCGC 4 cut(s) 69, 509, 617, 1016
BspANI GGCC 1 cut(s) 877
BspEI TCCGGA 1 cut(s) 888
BspLI GGNNCC 1 cut(s) 734
BspOI GCTAGC 1 cut(s) 338
BspQI GCTCTTC 1 cut(s) 1029
BsrBI CCGCTC 1 cut(s) 71
BssMI GATC 5 cut(s) 48, 167, 625, 658, 832
Bst2UI CCWGG 1 cut(s) 43
Bst4CI ACNGT 4 cut(s) 410, 492, 574, 755
Bst6I CTCTTC 2 cut(s) 185, 1029
BstAPI GCANNNNNTGC 1 cut(s) 959
BstC8I GCNNGC 5 cut(s) 73, 77, 336, 681, 1020
BstDEI CTNAG 1 cut(s) 608
BstF5I GGATG 1 cut(s) 964
BstHHI GCGC 1 cut(s) 33
BstKTI GATC 5 cut(s) 51, 170, 628, 661, 835
BstMAI GTCTC 1 cut(s) 491
BstMBI GATC 5 cut(s) 48, 167, 625, 658, 832
BstMWI GCNNNNNNNGC 2 cut(s) 278, 959
BstNI CCWGG 1 cut(s) 43
BstSCI CCNGG 1 cut(s) 41
BstSFI CTRYAG 1 cut(s) 754
BstV1I GCAGC 3 cut(s) 15, 259, 788
BstX2I RGATCY 1 cut(s) 832
BstYI RGATCY 1 cut(s) 832
BsuRI GGCC 1 cut(s) 877
BtgZI GCGATG 1 cut(s) 395
BtsCI GGATG 1 cut(s) 964
BtsIMutI CAGTG 2 cut(s) 751, 868
Cac8I GCNNGC 5 cut(s) 73, 77, 336, 681, 1020
CfoI GCGC 1 cut(s) 33
Cfr13I GGNCC 3 cut(s) 39, 876, 932
CseI GACGC 1 cut(s) 239
Csp6I GTAC 2 cut(s) 539, 845
CviAII CATG 6 cut(s) 197, 361, 662, 873, 916, 1037
CviQI GTAC 2 cut(s) 539, 845
DdeI CTNAG 1 cut(s) 608
DpnI GATC 5 cut(s) 50, 169, 627, 660, 834
DpnII GATC 5 cut(s) 48, 167, 625, 658, 832
Eam1104I CTCTTC 2 cut(s) 185, 1029
EarI CTCTTC 2 cut(s) 185, 1029
Eco47I GGWCC 2 cut(s) 39, 932
Eco57I CTGAAG 1 cut(s) 1005
EcoRII CCWGG 1 cut(s) 41
EcoT22I ATGCAT 1 cut(s) 1038
FaeI CATG 6 cut(s) 200, 364, 665, 876, 919, 1040
FaqI GGGAC 1 cut(s) 1030
FatI CATG 6 cut(s) 196, 360, 661, 872, 915, 1036
FauI CCCGC 1 cut(s) 502
FauNDI CATATG 1 cut(s) 991
FblI GTMKAC 2 cut(s) 253, 369
Fnu4HI GCNGC 4 cut(s) 29, 273, 802, 1016
FokI GGATG 1 cut(s) 971
Fsp4HI GCNGC 4 cut(s) 29, 273, 802, 1016
FspBI CTAG 6 cut(s) 155, 171, 222, 335, 560, 926
GlaI GCGC 1 cut(s) 32
GluI GCNGC 4 cut(s) 29, 273, 802, 1016
HaeIII GGCC 1 cut(s) 877
HapII CCGG 2 cut(s) 34, 889
HgaI GACGC 1 cut(s) 239
HhaI GCGC 1 cut(s) 33
Hin1II CATG 6 cut(s) 200, 364, 665, 876, 919, 1040
Hin6I GCGC 1 cut(s) 31
HinP1I GCGC 1 cut(s) 31
HincII GTYRAC 1 cut(s) 912
HindII GTYRAC 1 cut(s) 912
HindIII AAGCTT 1 cut(s) 818
HinfI GANTC 7 cut(s) 23, 65, 86, 227, 429, 894, 1043
HpaII CCGG 2 cut(s) 34, 889
HphI GGTGA 2 cut(s) 212, 466
Hpy166II GTNNAC 7 cut(s) 98, 254, 358, 370, 413, 691, 912
Hpy188I TCNGA 1 cut(s) 232
Hpy188III TCNNGA 6 cut(s) 171, 293, 560, 889, 1006, 1028
Hpy8I GTNNAC 7 cut(s) 98, 254, 358, 370, 413, 691, 912
HpyAV CCTTC 2 cut(s) 464, 923
HpyCH4III ACNGT 4 cut(s) 410, 492, 574, 755
HpyCH4IV ACGT 3 cut(s) 100, 401, 908
HpyF10VI GCNNNNNNNGC 2 cut(s) 278, 959
HpyF3I CTNAG 1 cut(s) 608
HpySE526I ACGT 3 cut(s) 100, 401, 908
Hsp92II CATG 6 cut(s) 200, 364, 665, 876, 919, 1040
HspAI GCGC 1 cut(s) 31
Kpn2I TCCGGA 1 cut(s) 888
Kzo9I GATC 5 cut(s) 48, 167, 625, 658, 832
LguI GCTCTTC 1 cut(s) 1029
LmnI GCTCC 1 cut(s) 473
Lsp1109I GCAGC 3 cut(s) 15, 259, 788
LweI GCATC 1 cut(s) 949
MaeI CTAG 6 cut(s) 155, 171, 222, 335, 560, 926
MaeII ACGT 3 cut(s) 100, 401, 908
MalI GATC 5 cut(s) 50, 169, 627, 660, 834
MbiI CCGCTC 1 cut(s) 71
MboI GATC 5 cut(s) 48, 167, 625, 658, 832
MboII GAAGA 6 cut(s) 58, 155, 202, 577, 620, 1016
MfeI CAATTG 1 cut(s) 786
MflI RGATCY 1 cut(s) 832
MlyI GAGTC 1 cut(s) 1052
MmeI TCCRAC 3 cut(s) 646, 875, 959
Mph1103I ATGCAT 1 cut(s) 1038
MroI TCCGGA 1 cut(s) 888
MroXI GAANNNNTTC 3 cut(s) 147, 354, 705
MseI TTAA 5 cut(s) 113, 741, 816, 822, 1051
MspI CCGG 2 cut(s) 34, 889
MspR9I CCNGG 1 cut(s) 43
MunI CAATTG 1 cut(s) 786
Mva1269I GAATGC 1 cut(s) 187
MvaI CCWGG 1 cut(s) 43
MwoI GCNNNNNNNGC 2 cut(s) 278, 959
NdeI CATATG 1 cut(s) 991
NdeII GATC 5 cut(s) 48, 167, 625, 658, 832
NheI GCTAGC 1 cut(s) 334
NlaIII CATG 6 cut(s) 200, 364, 665, 876, 919, 1040
NlaIV GGNNCC 1 cut(s) 734
NmeAIII GCCGAG 2 cut(s) 39, 235
NsiI ATGCAT 1 cut(s) 1038
PciSI GCTCTTC 1 cut(s) 1029
PctI GAATGC 1 cut(s) 187
PdmI GAANNNNTTC 3 cut(s) 147, 354, 705
PfeI GAWTC 6 cut(s) 23, 65, 86, 227, 429, 894
PfoI TCCNGGA 1 cut(s) 41
PkrI GCNGC 4 cut(s) 30, 274, 803, 1017
PleI GAGTC 1 cut(s) 1051
PpsI GAGTC 1 cut(s) 1051
PshBI ATTAAT 1 cut(s) 113
Psp1406I AACGTT 1 cut(s) 100
Psp6I CCWGG 1 cut(s) 41
PspGI CCWGG 1 cut(s) 41
PspN4I GGNNCC 1 cut(s) 734
PspPI GGNCC 3 cut(s) 39, 876, 932
PsuI RGATCY 1 cut(s) 832
RsaI GTAC 2 cut(s) 540, 846
RsaNI GTAC 2 cut(s) 539, 845
SapI GCTCTTC 1 cut(s) 1029
SaqAI TTAA 5 cut(s) 113, 741, 816, 822, 1051
SatI GCNGC 4 cut(s) 29, 273, 802, 1016
Sau3AI GATC 5 cut(s) 48, 167, 625, 658, 832
Sau96I GGNCC 3 cut(s) 39, 876, 932
ScaI AGTACT 1 cut(s) 540
SchI GAGTC 1 cut(s) 1052
ScrFI CCNGG 1 cut(s) 43
SfaNI GCATC 1 cut(s) 949
SfcI CTRYAG 1 cut(s) 754
SinI GGWCC 2 cut(s) 39, 932
SmlI CTYRAG 2 cut(s) 291, 542
SmoI CTYRAG 2 cut(s) 291, 542
SsiI CCGC 4 cut(s) 69, 509, 617, 1016
SspMI CTAG 6 cut(s) 155, 171, 222, 335, 560, 926
StyD4I CCNGG 1 cut(s) 41
TaaI ACNGT 4 cut(s) 410, 492, 574, 755
TaiI ACGT 3 cut(s) 103, 404, 911
TaqI TCGA 1 cut(s) 179
TatI WGTACW 1 cut(s) 538
TauI GCSGC 1 cut(s) 1018
TfiI GAWTC 6 cut(s) 23, 65, 86, 227, 429, 894
Tru1I TTAA 5 cut(s) 113, 741, 816, 822, 1051
Tru9I TTAA 5 cut(s) 113, 741, 816, 822, 1051
TscAI CASTG 2 cut(s) 758, 868
TseI GCWGC 3 cut(s) 28, 272, 801
TspDTI ATGAA 2 cut(s) 662, 932
TspGWI ACGGA 1 cut(s) 832
TspRI CASTG 2 cut(s) 758, 868
VpaK11BI GGWCC 2 cut(s) 39, 932
VspI ATTAAT 1 cut(s) 113
XapI RAATTY 4 cut(s) 263, 650, 747, 1009
XbaI TCTAGA 2 cut(s) 170, 559
XmiI GTMKAC 2 cut(s) 253, 369
XmnI GAANNNNTTC 3 cut(s) 147, 354, 705
XspI CTAG 6 cut(s) 155, 171, 222, 335, 560, 926
ZrmI AGTACT 1 cut(s) 540
Zsp2I ATGCAT 1 cut(s) 1038
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.