Nnf1
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G19350 |
| fragaria_vesca | FvH4_5g25140 FvH4_5g25140 FvH4_5g25140 |
| malus_domestica | MD03G1130300.v1.1 |
| prunus_persica | Prupe.5G013300_v2.0.a1 Prupe.5G013300_v2.0.a1 Prupe.5G013300_v2.0.a1 |
| rosa_chinensis | RchiOBHm_Chr7g0215331 |
| rosa_laevigata | RLG00000002669 |
| rosa_multiflora | Rmu_sc0000355.1_g000017 |
| rosa_roxburghii | Rroxscaffold_3G00244270 |
| rosa_rugosa | Rorug07G0152200 Rorug07G0152300 Rorug07G0152400 Rorug07G0152500 |
| rosa_samantha | Rh7AG289000 Rh7BG281000 Rh7CG308800 Rh7DG292600 |
| rosa_wichuraiana | Rw7G024710 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 442 |
| AccBSI | CCGCTC | 2 cut(s) | 59, 1062 |
| AccII | CGCG | 2 cut(s) | 870, 1085 |
| AclWI | GGATC | 5 cut(s) | 615, 628, 1144, 1157, 1278 |
| AcyI | GRCGYC | 1 cut(s) | 1253 |
| AfaI | GTAC | 3 cut(s) | 627, 839, 997 |
| AfeI | AGCGCT | 1 cut(s) | 812 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 68, 208, 280, 537, 934, 955 |
| AgsI | TTSAA | 6 cut(s) | 430, 472, 694, 844, 1003, 1186 |
| AjiI | CACGTC | 3 cut(s) | 313, 319, 325 |
| AjnI | CCWGG | 1 cut(s) | 948 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 485, 517 |
| AluBI | AGCT | 5 cut(s) | 8, 439, 676, 741, 794 |
| AluI | AGCT | 5 cut(s) | 8, 439, 676, 741, 794 |
| Alw21I | GWGCWC | 1 cut(s) | 273 |
| Alw26I | GTCTC | 3 cut(s) | 411, 560, 726 |
| Alw44I | GTGCAC | 1 cut(s) | 269 |
| AlwI | GGATC | 5 cut(s) | 615, 628, 1144, 1157, 1278 |
| Aor51HI | AGCGCT | 1 cut(s) | 812 |
| AoxI | GGCC | 4 cut(s) | 40, 70, 210, 583 |
| ApaLI | GTGCAC | 1 cut(s) | 269 |
| ApeKI | GCWGC | 9 cut(s) | 237, 514, 794, 924, 931, 1129, 1132, 1135, 1138 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 176, 208 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 677 |
| AspLEI | GCGC | 2 cut(s) | 813, 1160 |
| AspS9I | GGNCC | 3 cut(s) | 71, 173, 584 |
| AsuC2I | CCSGG | 5 cut(s) | 367, 539, 587, 1095, 1222 |
| AsuHPI | GGTGA | 7 cut(s) | 76, 100, 344, 353, 697, 718, 862 |
| AsuII | TTCGAA | 2 cut(s) | 818, 875 |
| AvaII | GGWCC | 1 cut(s) | 173 |
| BaeGI | GKGCMC | 1 cut(s) | 273 |
| BamHI | GGATCC | 2 cut(s) | 620, 1149 |
| BanI | GGYRCC | 1 cut(s) | 442 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 845, 877 |
| BbsI | GAAGAC | 4 cut(s) | 354, 460, 535, 899 |
| Bbv12I | GWGCWC | 1 cut(s) | 273 |
| BbvI | GCAGC | 9 cut(s) | 249, 501, 781, 936, 943, 1116, 1119, 1147, 1150 |
| BccI | CCATC | 3 cut(s) | 110, 272, 1139 |
| BceAI | ACGGC | 5 cut(s) | 98, 182, 598, 901, 1090 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 776, 810 |
| BciT130I | CCWGG | 1 cut(s) | 950 |
| BcnI | CCSGG | 5 cut(s) | 367, 539, 587, 1095, 1222 |
| BcoDI | GTCTC | 3 cut(s) | 411, 560, 726 |
| BfmI | CTRYAG | 2 cut(s) | 1077, 1133 |
| BfoI | RGCGCY | 2 cut(s) | 814, 1161 |
| BmcAI | AGTACT | 2 cut(s) | 839, 997 |
| Bme1390I | CCNGG | 6 cut(s) | 367, 539, 587, 950, 1095, 1222 |
| Bme18I | GGWCC | 1 cut(s) | 173 |
| BmgBI | CACGTC | 3 cut(s) | 313, 319, 325 |
| BmgT120I | GGNCC | 3 cut(s) | 71, 173, 584 |
| BmiI | GGNNCC | 6 cut(s) | 444, 603, 622, 972, 1089, 1151 |
| BmrFI | CCNGG | 6 cut(s) | 367, 539, 587, 950, 1095, 1222 |
| BoxI | GACNNNNGTC | 1 cut(s) | 135 |
| BpiI | GAAGAC | 4 cut(s) | 354, 460, 535, 899 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 443, 475, 473, 505 |
| BpmI | CTGGAG | 1 cut(s) | 727 |
| Bpu14I | TTCGAA | 2 cut(s) | 818, 875 |
| BpuEI | CTTGAG | 3 cut(s) | 5, 503, 542 |
| BpuMI | CCSGG | 5 cut(s) | 367, 539, 587, 1095, 1222 |
| BsaHI | GRCGYC | 1 cut(s) | 1253 |
| BsaI | GGTCTC | 1 cut(s) | 560 |
| BsaJI | CCNNGG | 2 cut(s) | 492, 1083 |
| BsaWI | WCCGGW | 1 cut(s) | 905 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 329, 359, 725, 755 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 68, 208, 280, 537, 934, 955 |
| Bse118I | RCCGGY | 2 cut(s) | 934, 973 |
| Bse3DI | GCAATG | 3 cut(s) | 382, 991, 1168 |
| BseBI | CCWGG | 1 cut(s) | 950 |
| BseDI | CCNNGG | 2 cut(s) | 492, 1083 |
| BseGI | GGATG | 2 cut(s) | 102, 1150 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 68, 208, 280, 537, 934, 955 |
| BseMI | GCAATG | 3 cut(s) | 382, 991, 1168 |
| BseMII | CTCAG | 3 cut(s) | 111, 792, 928 |
| BseRI | GAGGAG | 3 cut(s) | 51, 350, 1129 |
| BseSI | GKGCMC | 1 cut(s) | 273 |
| BseXI | GCAGC | 9 cut(s) | 249, 501, 781, 936, 943, 1116, 1119, 1147, 1150 |
| Bsh1236I | CGCG | 2 cut(s) | 870, 1085 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1226 |
| BshFI | GGCC | 4 cut(s) | 42, 72, 212, 585 |
| BshNI | GGYRCC | 1 cut(s) | 442 |
| BsiEI | CGRYCG | 1 cut(s) | 1226 |
| BsiHKAI | GWGCWC | 1 cut(s) | 273 |
| BsiSI | CCGG | 9 cut(s) | 366, 538, 587, 906, 935, 974, 1019, 1094, 1222 |
| BslFI | GGGAC | 1 cut(s) | 185 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 68, 208, 280, 537, 934, 955 |
| BsmAI | GTCTC | 3 cut(s) | 411, 560, 726 |
| BsmFI | GGGAC | 1 cut(s) | 185 |
| BsnI | GGCC | 4 cut(s) | 42, 72, 212, 585 |
| Bso31I | GGTCTC | 1 cut(s) | 560 |
| Bsp119I | TTCGAA | 2 cut(s) | 818, 875 |
| Bsp1286I | GDGCHC | 1 cut(s) | 273 |
| Bsp143I | GATC | 3 cut(s) | 620, 1149, 1270 |
| BspANI | GGCC | 4 cut(s) | 42, 72, 212, 585 |
| BspCNI | CTCAG | 3 cut(s) | 112, 793, 927 |
| BspFNI | CGCG | 2 cut(s) | 870, 1085 |
| BspLI | GGNNCC | 6 cut(s) | 444, 603, 622, 972, 1089, 1151 |
| BspMAI | CTGCAG | 1 cut(s) | 1137 |
| BspPI | GGATC | 5 cut(s) | 615, 628, 1144, 1157, 1278 |
| BspQI | GCTCTTC | 2 cut(s) | 938, 1049 |
| BspT104I | TTCGAA | 2 cut(s) | 818, 875 |
| BspT107I | GGYRCC | 1 cut(s) | 442 |
| BspTNI | GGTCTC | 1 cut(s) | 560 |
| BsrBI | CCGCTC | 2 cut(s) | 59, 1062 |
| BsrDI | GCAATG | 3 cut(s) | 382, 991, 1168 |
| BsrFI | RCCGGY | 2 cut(s) | 934, 973 |
| BssAI | RCCGGY | 2 cut(s) | 934, 973 |
| BssECI | CCNNGG | 2 cut(s) | 492, 1083 |
| BssMI | GATC | 3 cut(s) | 620, 1149, 1270 |
| BssNI | GRCGYC | 1 cut(s) | 1253 |
| BssT1I | CCWWGG | 1 cut(s) | 492 |
| Bst2UI | CCWGG | 1 cut(s) | 950 |
| Bst4CI | ACNGT | 5 cut(s) | 332, 358, 685, 1102, 1266 |
| Bst6I | CTCTTC | 3 cut(s) | 938, 986, 1049 |
| BstACI | GRCGYC | 1 cut(s) | 1253 |
| BstBI | TTCGAA | 2 cut(s) | 818, 875 |
| BstC8I | GCNNGC | 6 cut(s) | 17, 929, 936, 982, 1043, 1175 |
| BstDEI | CTNAG | 3 cut(s) | 120, 801, 914 |
| BstDSI | CCRYGG | 1 cut(s) | 1083 |
| BstF5I | GGATG | 2 cut(s) | 102, 1150 |
| BstFNI | CGCG | 2 cut(s) | 870, 1085 |
| BstH2I | RGCGCY | 2 cut(s) | 814, 1161 |
| BstHHI | GCGC | 2 cut(s) | 813, 1160 |
| BstKTI | GATC | 3 cut(s) | 623, 1152, 1273 |
| BstMAI | GTCTC | 3 cut(s) | 411, 560, 726 |
| BstMBI | GATC | 3 cut(s) | 620, 1149, 1270 |
| BstMCI | CGRYCG | 1 cut(s) | 1226 |
| BstNI | CCWGG | 1 cut(s) | 950 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 135 |
| BstSCI | CCNGG | 6 cut(s) | 365, 537, 585, 948, 1093, 1220 |
| BstSFI | CTRYAG | 2 cut(s) | 1077, 1133 |
| BstSLI | GKGCMC | 1 cut(s) | 273 |
| BstUI | CGCG | 2 cut(s) | 870, 1085 |
| BstV1I | GCAGC | 9 cut(s) | 249, 501, 781, 936, 943, 1116, 1119, 1147, 1150 |
| BstV2I | GAAGAC | 4 cut(s) | 354, 460, 535, 899 |
| BstX2I | RGATCY | 2 cut(s) | 620, 1149 |
| BstYI | RGATCY | 2 cut(s) | 620, 1149 |
| BsuRI | GGCC | 4 cut(s) | 42, 72, 212, 585 |
| BtgI | CCRYGG | 1 cut(s) | 1083 |
| BtrI | CACGTC | 3 cut(s) | 313, 319, 325 |
| BtsCI | GGATG | 2 cut(s) | 102, 1150 |
| BtsIMutI | CAGTG | 1 cut(s) | 354 |
| Cac8I | GCNNGC | 6 cut(s) | 17, 929, 936, 982, 1043, 1175 |
| CfoI | GCGC | 2 cut(s) | 813, 1160 |
| Cfr10I | RCCGGY | 2 cut(s) | 934, 973 |
| Cfr13I | GGNCC | 3 cut(s) | 71, 173, 584 |
| Cfr42I | CCGCGG | 1 cut(s) | 1086 |
| CseI | GACGC | 1 cut(s) | 1242 |
| Csp6I | GTAC | 3 cut(s) | 626, 838, 996 |
| CviAII | CATG | 2 cut(s) | 547, 638 |
| CviQI | GTAC | 3 cut(s) | 626, 838, 996 |
| DdeI | CTNAG | 3 cut(s) | 120, 801, 914 |
| DpnI | GATC | 3 cut(s) | 622, 1151, 1272 |
| DpnII | GATC | 3 cut(s) | 620, 1149, 1270 |
| Eam1104I | CTCTTC | 3 cut(s) | 938, 986, 1049 |
| EarI | CTCTTC | 3 cut(s) | 938, 986, 1049 |
| EciI | GGCGGA | 5 cut(s) | 79, 514, 953, 968, 974 |
| Eco130I | CCWWGG | 1 cut(s) | 492 |
| Eco31I | GGTCTC | 1 cut(s) | 560 |
| Eco47I | GGWCC | 1 cut(s) | 173 |
| Eco47III | AGCGCT | 1 cut(s) | 812 |
| EcoRII | CCWGG | 1 cut(s) | 948 |
| EcoT14I | CCWWGG | 1 cut(s) | 492 |
| ErhI | CCWWGG | 1 cut(s) | 492 |
| FaeI | CATG | 2 cut(s) | 550, 641 |
| FaiI | YATR | 2 cut(s) | 548, 639 |
| FaqI | GGGAC | 1 cut(s) | 185 |
| FatI | CATG | 2 cut(s) | 546, 637 |
| FauI | CCCGC | 2 cut(s) | 936, 1015 |
| FokI | GGATG | 2 cut(s) | 89, 1157 |
| GlaI | GCGC | 2 cut(s) | 812, 1159 |
| GsuI | CTGGAG | 1 cut(s) | 727 |
| HaeII | RGCGCY | 2 cut(s) | 814, 1161 |
| HaeIII | GGCC | 4 cut(s) | 42, 72, 212, 585 |
| HapII | CCGG | 9 cut(s) | 366, 538, 587, 906, 935, 974, 1019, 1094, 1222 |
| HgaI | GACGC | 1 cut(s) | 1242 |
| HhaI | GCGC | 2 cut(s) | 813, 1160 |
| Hin1I | GRCGYC | 1 cut(s) | 1253 |
| Hin1II | CATG | 2 cut(s) | 550, 641 |
| Hin6I | GCGC | 2 cut(s) | 811, 1158 |
| HinP1I | GCGC | 2 cut(s) | 811, 1158 |
| HincII | GTYRAC | 1 cut(s) | 911 |
| HindII | GTYRAC | 1 cut(s) | 911 |
| HindIII | AAGCTT | 2 cut(s) | 6, 674 |
| HinfI | GANTC | 8 cut(s) | 136, 293, 394, 747, 1124, 1199, 1205, 1235 |
| HpaII | CCGG | 9 cut(s) | 366, 538, 587, 906, 935, 974, 1019, 1094, 1222 |
| HphI | GGTGA | 7 cut(s) | 76, 100, 344, 353, 697, 718, 862 |
| Hpy166II | GTNNAC | 6 cut(s) | 271, 316, 322, 328, 726, 911 |
| Hpy188I | TCNGA | 8 cut(s) | 298, 415, 481, 787, 802, 970, 1204, 1270 |
| Hpy188III | TCNNGA | 6 cut(s) | 140, 231, 559, 744, 1153, 1194 |
| Hpy8I | GTNNAC | 6 cut(s) | 271, 316, 322, 328, 726, 911 |
| HpyAV | CCTTC | 3 cut(s) | 465, 688, 1243 |
| HpyCH4III | ACNGT | 5 cut(s) | 332, 358, 685, 1102, 1266 |
| HpyCH4IV | ACGT | 4 cut(s) | 312, 318, 324, 864 |
| HpyCH4V | TGCA | 6 cut(s) | 271, 832, 1041, 1135, 1173, 1242 |
| HpyF3I | CTNAG | 3 cut(s) | 120, 801, 914 |
| HpySE526I | ACGT | 4 cut(s) | 312, 318, 324, 864 |
| Hsp92I | GRCGYC | 1 cut(s) | 1253 |
| Hsp92II | CATG | 2 cut(s) | 550, 641 |
| HspAI | GCGC | 2 cut(s) | 811, 1158 |
| KroI | GCCGGC | 1 cut(s) | 934 |
| KroNI | GCCGGC | 1 cut(s) | 936 |
| KspI | CCGCGG | 1 cut(s) | 1086 |
| Kzo9I | GATC | 3 cut(s) | 620, 1149, 1270 |
| LguI | GCTCTTC | 2 cut(s) | 938, 1049 |
| LmnI | GCTCC | 3 cut(s) | 64, 746, 1093 |
| Lsp1109I | GCAGC | 9 cut(s) | 249, 501, 781, 936, 943, 1116, 1119, 1147, 1150 |
| MaeII | ACGT | 4 cut(s) | 312, 318, 324, 864 |
| MaeIII | GTNAC | 4 cut(s) | 82, 137, 1107, 1254 |
| MalI | GATC | 3 cut(s) | 622, 1151, 1272 |
| MbiI | CCGCTC | 2 cut(s) | 59, 1062 |
| MboI | GATC | 3 cut(s) | 620, 1149, 1270 |
| MflI | RGATCY | 2 cut(s) | 620, 1149 |
| MhlI | GDGCHC | 1 cut(s) | 273 |
| MluCI | AATT | 2 cut(s) | 500, 574 |
| MlyI | GAGTC | 2 cut(s) | 145, 302 |
| MmeI | TCCRAC | 3 cut(s) | 603, 777, 1248 |
| MroNI | GCCGGC | 1 cut(s) | 934 |
| MroXI | GAANNNNTTC | 1 cut(s) | 677 |
| MseI | TTAA | 1 cut(s) | 348 |
| MslI | CAYNNNNRTG | 1 cut(s) | 276 |
| MspA1I | CMGCKG | 2 cut(s) | 246, 1085 |
| MspI | CCGG | 9 cut(s) | 366, 538, 587, 906, 935, 974, 1019, 1094, 1222 |
| MspR9I | CCNGG | 6 cut(s) | 367, 539, 587, 950, 1095, 1222 |
| MvaI | CCWGG | 1 cut(s) | 950 |
| MvnI | CGCG | 2 cut(s) | 870, 1085 |
| NaeI | GCCGGC | 1 cut(s) | 936 |
| NciI | CCSGG | 5 cut(s) | 367, 539, 587, 1095, 1222 |
| NdeII | GATC | 3 cut(s) | 620, 1149, 1270 |
| NgoMIV | GCCGGC | 1 cut(s) | 934 |
| NlaIII | CATG | 2 cut(s) | 550, 641 |
| NlaIV | GGNNCC | 6 cut(s) | 444, 603, 622, 972, 1089, 1151 |
| NmeAIII | GCCGAG | 1 cut(s) | 1043 |
| NmuCI | GTSAC | 4 cut(s) | 82, 137, 1107, 1254 |
| NspV | TTCGAA | 2 cut(s) | 818, 875 |
| PciSI | GCTCTTC | 2 cut(s) | 938, 1049 |
| PcsI | WCGNNNNNNNCGW | 7 cut(s) | 138, 147, 156, 159, 162, 165, 315 |
| PdiI | GCCGGC | 1 cut(s) | 936 |
| PdmI | GAANNNNTTC | 1 cut(s) | 677 |
| PfeI | GAWTC | 6 cut(s) | 394, 747, 1124, 1199, 1205, 1235 |
| PleI | GAGTC | 2 cut(s) | 144, 301 |
| PpsI | GAGTC | 2 cut(s) | 144, 301 |
| PshAI | GACNNNNGTC | 1 cut(s) | 135 |
| Psp6I | CCWGG | 1 cut(s) | 948 |
| PspGI | CCWGG | 1 cut(s) | 948 |
| PspN4I | GGNNCC | 6 cut(s) | 444, 603, 622, 972, 1089, 1151 |
| PspPI | GGNCC | 3 cut(s) | 71, 173, 584 |
| PstI | CTGCAG | 1 cut(s) | 1137 |
| PsuI | RGATCY | 2 cut(s) | 620, 1149 |
| RsaI | GTAC | 3 cut(s) | 627, 839, 997 |
| RsaNI | GTAC | 3 cut(s) | 626, 838, 996 |
| RseI | CAYNNNNRTG | 1 cut(s) | 276 |
| SacII | CCGCGG | 1 cut(s) | 1086 |
| SapI | GCTCTTC | 2 cut(s) | 938, 1049 |
| SaqAI | TTAA | 1 cut(s) | 348 |
| Sau3AI | GATC | 3 cut(s) | 620, 1149, 1270 |
| Sau96I | GGNCC | 3 cut(s) | 71, 173, 584 |
| ScaI | AGTACT | 2 cut(s) | 839, 997 |
| SchI | GAGTC | 2 cut(s) | 145, 302 |
| ScrFI | CCNGG | 6 cut(s) | 367, 539, 587, 950, 1095, 1222 |
| SduI | GDGCHC | 1 cut(s) | 273 |
| SfcI | CTRYAG | 2 cut(s) | 1077, 1133 |
| Sfr303I | CCGCGG | 1 cut(s) | 1086 |
| SfuI | TTCGAA | 2 cut(s) | 818, 875 |
| SgrBI | CCGCGG | 1 cut(s) | 1086 |
| SinI | GGWCC | 1 cut(s) | 173 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 276 |
| SmlI | CTYRAG | 3 cut(s) | 20, 518, 557 |
| SmoI | CTYRAG | 3 cut(s) | 20, 518, 557 |
| Sse9I | AATT | 2 cut(s) | 500, 574 |
| SspI | AATATT | 1 cut(s) | 1015 |
| StyD4I | CCNGG | 6 cut(s) | 365, 537, 585, 948, 1093, 1220 |
| StyI | CCWWGG | 1 cut(s) | 492 |
| TaaI | ACNGT | 5 cut(s) | 332, 358, 685, 1102, 1266 |
| TaiI | ACGT | 4 cut(s) | 315, 321, 327, 867 |
| TaqI | TCGA | 5 cut(s) | 371, 401, 818, 875, 1226 |
| TasI | AATT | 2 cut(s) | 500, 574 |
| TatI | WGTACW | 2 cut(s) | 837, 995 |
| TauI | GCSGC | 9 cut(s) | 42, 95, 98, 101, 249, 980, 1062, 1085, 1088 |
| TfiI | GAWTC | 6 cut(s) | 394, 747, 1124, 1199, 1205, 1235 |
| Tru1I | TTAA | 1 cut(s) | 348 |
| Tru9I | TTAA | 1 cut(s) | 348 |
| TscAI | CASTG | 1 cut(s) | 361 |
| TseFI | GTSAC | 4 cut(s) | 82, 137, 1107, 1254 |
| TseI | GCWGC | 9 cut(s) | 237, 514, 794, 924, 931, 1129, 1132, 1135, 1138 |
| Tsp45I | GTSAC | 4 cut(s) | 82, 137, 1107, 1254 |
| TspDTI | ATGAA | 2 cut(s) | 535, 654 |
| TspGWI | ACGGA | 4 cut(s) | 186, 613, 614, 633 |
| TspRI | CASTG | 1 cut(s) | 361 |
| VneI | GTGCAC | 1 cut(s) | 269 |
| VpaK11BI | GGWCC | 1 cut(s) | 173 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 227 |
| XmnI | GAANNNNTTC | 1 cut(s) | 677 |
| ZrmI | AGTACT | 2 cut(s) | 839, 997 |