Rorug07G0152500

Nnf1

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
Physical Location & Seq
Forward (+)
12097020 .. 12098995
1976 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0152500.1

Sequence Viewer

Length: 1290 bp
ATGGAAGCTTTTAGCCTGCTCAAGTATTGGCGAGGTGGCGGCCTTGTTGCTTCCTCCGCTCCTCCTAATGGCCCTAACAATGTCACCTCCGCCGCCGCCGCCATCCTCACCGCCGTCGCTGAGAACAGCGACGAGAGTCACGAAACTGACGACGACGACGACGACGACGACGGACCTTTCTTTGACTTGGAGTTTGCCGTCCCTGACGAGGCCGAAGCCCACGAAGCCTCTGGAAGCAGCGACAGCGGCGACGAGAGTGAGGTGGAAGTGCACCAAGATGGGGAAGATGATGAGTCTGATGATGATGACGACGTGGACGTGGACGTGGACGGTGAGGAGGGTGAGTTTAACTTCACTGTGTCTTCCGGGTCGAGCAATGACCGCACCGACCCGAATCTGTCGATGTCTCCCTCTGACGATTTGTTCTTCAAGGGTAAGCTGGTGCCGATTGAGCCTTCCTCCATTGTCTTCAACCCGTCCGAGCCGAACTCCAAGGCTCAATTCGCAGGGTCGCTGCTCAAGTCCGCCACCAAGTTCCGGGTCTTCATGTCGGGTCTCAAGAAATCCAAGTCCAATTCCAACGGCCCGGAAAACAAAACGGAACCTACAAATACAAACGGATCCGTACAAGAACAACATGAAAAACAAGAGAATAAGCAACAGAAGCAGGGGAAGCTTTTCACGGTGAAGTTGAAGGTGGAGGAAGTTCCCATTGTGTCCTTGTTCACCAGAGACAACAGCTCCAGAATCTCCAACAAGACCCAGAACCAGAAAACCCAGAGTTCCGAAGAAGCTGCTTCTGAGGAAAAGCGCTTTTCGAAAGAGGTAATGCAGAAGTACTTGAAAATGGTGAAGCCTCTCTACGTCCGCGTTTCGAAACGCTACGGCGAGAAGACGAGGCTCTCCGGTCAACTCAGCGTAAGCAGCCCGCAGCCGGCGGAGAAGAGCCAGGCGGAGGCGGAAGTTTCGGAACCGGCGGCGAGCAATGTGAAGAGTACTTTGAAGCAGGGGAATATTCCGGCGGGTTTGAGAGTTGTTTGCAAGCACTTGGGGAAGAGCCGCTCGGCTTCTTCGGCTGTAGCCGCGGCTCCACCGGGAACTGTGCCGTCACAGAGGAGAGATGATTCGCTGCTGCAGCAGCAGGATGGGATCCAGAGCGCCATTCTCCATTGCAAGCGGTCATTCAATGCTTCCAGAGATTCCGATTCTACTCCGCTATCCCGGTCGATGAGCGATTCCTGCAACGAGAAGGCGTCACTAAAACCGTCGGATCAAGGCGGAGAGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

429

Amino Acids

46.31

Weight (kDa)

4.75

Isoelectric Point (pI)

53.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 442
AccBSI CCGCTC 2 cut(s) 59, 1062
AccII CGCG 2 cut(s) 870, 1085
AclWI GGATC 5 cut(s) 615, 628, 1144, 1157, 1278
AcyI GRCGYC 1 cut(s) 1253
AfaI GTAC 3 cut(s) 627, 839, 997
AfeI AGCGCT 1 cut(s) 812
AfiI CCNNNNNNNGG 6 cut(s) 68, 208, 280, 537, 934, 955
AgsI TTSAA 6 cut(s) 430, 472, 694, 844, 1003, 1186
AjiI CACGTC 3 cut(s) 313, 319, 325
AjnI CCWGG 1 cut(s) 948
AjuI GAANNNNNNNTTGG 2 cut(s) 485, 517
AluBI AGCT 5 cut(s) 8, 439, 676, 741, 794
AluI AGCT 5 cut(s) 8, 439, 676, 741, 794
Alw21I GWGCWC 1 cut(s) 273
Alw26I GTCTC 3 cut(s) 411, 560, 726
Alw44I GTGCAC 1 cut(s) 269
AlwI GGATC 5 cut(s) 615, 628, 1144, 1157, 1278
Aor51HI AGCGCT 1 cut(s) 812
AoxI GGCC 4 cut(s) 40, 70, 210, 583
ApaLI GTGCAC 1 cut(s) 269
ApeKI GCWGC 9 cut(s) 237, 514, 794, 924, 931, 1129, 1132, 1135, 1138
ArsI GACNNNNNNTTYG 2 cut(s) 176, 208
Asp700I GAANNNNTTC 1 cut(s) 677
AspLEI GCGC 2 cut(s) 813, 1160
AspS9I GGNCC 3 cut(s) 71, 173, 584
AsuC2I CCSGG 5 cut(s) 367, 539, 587, 1095, 1222
AsuHPI GGTGA 7 cut(s) 76, 100, 344, 353, 697, 718, 862
AsuII TTCGAA 2 cut(s) 818, 875
AvaII GGWCC 1 cut(s) 173
BaeGI GKGCMC 1 cut(s) 273
BamHI GGATCC 2 cut(s) 620, 1149
BanI GGYRCC 1 cut(s) 442
BarI GAAGNNNNNNTAC 2 cut(s) 845, 877
BbsI GAAGAC 4 cut(s) 354, 460, 535, 899
Bbv12I GWGCWC 1 cut(s) 273
BbvI GCAGC 9 cut(s) 249, 501, 781, 936, 943, 1116, 1119, 1147, 1150
BccI CCATC 3 cut(s) 110, 272, 1139
BceAI ACGGC 5 cut(s) 98, 182, 598, 901, 1090
BcgI CGANNNNNNTGC 2 cut(s) 776, 810
BciT130I CCWGG 1 cut(s) 950
BcnI CCSGG 5 cut(s) 367, 539, 587, 1095, 1222
BcoDI GTCTC 3 cut(s) 411, 560, 726
BfmI CTRYAG 2 cut(s) 1077, 1133
BfoI RGCGCY 2 cut(s) 814, 1161
BmcAI AGTACT 2 cut(s) 839, 997
Bme1390I CCNGG 6 cut(s) 367, 539, 587, 950, 1095, 1222
Bme18I GGWCC 1 cut(s) 173
BmgBI CACGTC 3 cut(s) 313, 319, 325
BmgT120I GGNCC 3 cut(s) 71, 173, 584
BmiI GGNNCC 6 cut(s) 444, 603, 622, 972, 1089, 1151
BmrFI CCNGG 6 cut(s) 367, 539, 587, 950, 1095, 1222
BoxI GACNNNNGTC 1 cut(s) 135
BpiI GAAGAC 4 cut(s) 354, 460, 535, 899
BplI GAGNNNNNCTC 4 cut(s) 443, 475, 473, 505
BpmI CTGGAG 1 cut(s) 727
Bpu14I TTCGAA 2 cut(s) 818, 875
BpuEI CTTGAG 3 cut(s) 5, 503, 542
BpuMI CCSGG 5 cut(s) 367, 539, 587, 1095, 1222
BsaHI GRCGYC 1 cut(s) 1253
BsaI GGTCTC 1 cut(s) 560
BsaJI CCNNGG 2 cut(s) 492, 1083
BsaWI WCCGGW 1 cut(s) 905
BsaXI ACNNNNNCTCC 4 cut(s) 329, 359, 725, 755
Bsc4I CCNNNNNNNGG 6 cut(s) 68, 208, 280, 537, 934, 955
Bse118I RCCGGY 2 cut(s) 934, 973
Bse3DI GCAATG 3 cut(s) 382, 991, 1168
BseBI CCWGG 1 cut(s) 950
BseDI CCNNGG 2 cut(s) 492, 1083
BseGI GGATG 2 cut(s) 102, 1150
BseLI CCNNNNNNNGG 6 cut(s) 68, 208, 280, 537, 934, 955
BseMI GCAATG 3 cut(s) 382, 991, 1168
BseMII CTCAG 3 cut(s) 111, 792, 928
BseRI GAGGAG 3 cut(s) 51, 350, 1129
BseSI GKGCMC 1 cut(s) 273
BseXI GCAGC 9 cut(s) 249, 501, 781, 936, 943, 1116, 1119, 1147, 1150
Bsh1236I CGCG 2 cut(s) 870, 1085
Bsh1285I CGRYCG 1 cut(s) 1226
BshFI GGCC 4 cut(s) 42, 72, 212, 585
BshNI GGYRCC 1 cut(s) 442
BsiEI CGRYCG 1 cut(s) 1226
BsiHKAI GWGCWC 1 cut(s) 273
BsiSI CCGG 9 cut(s) 366, 538, 587, 906, 935, 974, 1019, 1094, 1222
BslFI GGGAC 1 cut(s) 185
BslI CCNNNNNNNGG 6 cut(s) 68, 208, 280, 537, 934, 955
BsmAI GTCTC 3 cut(s) 411, 560, 726
BsmFI GGGAC 1 cut(s) 185
BsnI GGCC 4 cut(s) 42, 72, 212, 585
Bso31I GGTCTC 1 cut(s) 560
Bsp119I TTCGAA 2 cut(s) 818, 875
Bsp1286I GDGCHC 1 cut(s) 273
Bsp143I GATC 3 cut(s) 620, 1149, 1270
BspANI GGCC 4 cut(s) 42, 72, 212, 585
BspCNI CTCAG 3 cut(s) 112, 793, 927
BspFNI CGCG 2 cut(s) 870, 1085
BspLI GGNNCC 6 cut(s) 444, 603, 622, 972, 1089, 1151
BspMAI CTGCAG 1 cut(s) 1137
BspPI GGATC 5 cut(s) 615, 628, 1144, 1157, 1278
BspQI GCTCTTC 2 cut(s) 938, 1049
BspT104I TTCGAA 2 cut(s) 818, 875
BspT107I GGYRCC 1 cut(s) 442
BspTNI GGTCTC 1 cut(s) 560
BsrBI CCGCTC 2 cut(s) 59, 1062
BsrDI GCAATG 3 cut(s) 382, 991, 1168
BsrFI RCCGGY 2 cut(s) 934, 973
BssAI RCCGGY 2 cut(s) 934, 973
BssECI CCNNGG 2 cut(s) 492, 1083
BssMI GATC 3 cut(s) 620, 1149, 1270
BssNI GRCGYC 1 cut(s) 1253
BssT1I CCWWGG 1 cut(s) 492
Bst2UI CCWGG 1 cut(s) 950
Bst4CI ACNGT 5 cut(s) 332, 358, 685, 1102, 1266
Bst6I CTCTTC 3 cut(s) 938, 986, 1049
BstACI GRCGYC 1 cut(s) 1253
BstBI TTCGAA 2 cut(s) 818, 875
BstC8I GCNNGC 6 cut(s) 17, 929, 936, 982, 1043, 1175
BstDEI CTNAG 3 cut(s) 120, 801, 914
BstDSI CCRYGG 1 cut(s) 1083
BstF5I GGATG 2 cut(s) 102, 1150
BstFNI CGCG 2 cut(s) 870, 1085
BstH2I RGCGCY 2 cut(s) 814, 1161
BstHHI GCGC 2 cut(s) 813, 1160
BstKTI GATC 3 cut(s) 623, 1152, 1273
BstMAI GTCTC 3 cut(s) 411, 560, 726
BstMBI GATC 3 cut(s) 620, 1149, 1270
BstMCI CGRYCG 1 cut(s) 1226
BstNI CCWGG 1 cut(s) 950
BstPAI GACNNNNGTC 1 cut(s) 135
BstSCI CCNGG 6 cut(s) 365, 537, 585, 948, 1093, 1220
BstSFI CTRYAG 2 cut(s) 1077, 1133
BstSLI GKGCMC 1 cut(s) 273
BstUI CGCG 2 cut(s) 870, 1085
BstV1I GCAGC 9 cut(s) 249, 501, 781, 936, 943, 1116, 1119, 1147, 1150
BstV2I GAAGAC 4 cut(s) 354, 460, 535, 899
BstX2I RGATCY 2 cut(s) 620, 1149
BstYI RGATCY 2 cut(s) 620, 1149
BsuRI GGCC 4 cut(s) 42, 72, 212, 585
BtgI CCRYGG 1 cut(s) 1083
BtrI CACGTC 3 cut(s) 313, 319, 325
BtsCI GGATG 2 cut(s) 102, 1150
BtsIMutI CAGTG 1 cut(s) 354
Cac8I GCNNGC 6 cut(s) 17, 929, 936, 982, 1043, 1175
CfoI GCGC 2 cut(s) 813, 1160
Cfr10I RCCGGY 2 cut(s) 934, 973
Cfr13I GGNCC 3 cut(s) 71, 173, 584
Cfr42I CCGCGG 1 cut(s) 1086
CseI GACGC 1 cut(s) 1242
Csp6I GTAC 3 cut(s) 626, 838, 996
CviAII CATG 2 cut(s) 547, 638
CviQI GTAC 3 cut(s) 626, 838, 996
DdeI CTNAG 3 cut(s) 120, 801, 914
DpnI GATC 3 cut(s) 622, 1151, 1272
DpnII GATC 3 cut(s) 620, 1149, 1270
Eam1104I CTCTTC 3 cut(s) 938, 986, 1049
EarI CTCTTC 3 cut(s) 938, 986, 1049
EciI GGCGGA 5 cut(s) 79, 514, 953, 968, 974
Eco130I CCWWGG 1 cut(s) 492
Eco31I GGTCTC 1 cut(s) 560
Eco47I GGWCC 1 cut(s) 173
Eco47III AGCGCT 1 cut(s) 812
EcoRII CCWGG 1 cut(s) 948
EcoT14I CCWWGG 1 cut(s) 492
ErhI CCWWGG 1 cut(s) 492
FaeI CATG 2 cut(s) 550, 641
FaiI YATR 2 cut(s) 548, 639
FaqI GGGAC 1 cut(s) 185
FatI CATG 2 cut(s) 546, 637
FauI CCCGC 2 cut(s) 936, 1015
FokI GGATG 2 cut(s) 89, 1157
GlaI GCGC 2 cut(s) 812, 1159
GsuI CTGGAG 1 cut(s) 727
HaeII RGCGCY 2 cut(s) 814, 1161
HaeIII GGCC 4 cut(s) 42, 72, 212, 585
HapII CCGG 9 cut(s) 366, 538, 587, 906, 935, 974, 1019, 1094, 1222
HgaI GACGC 1 cut(s) 1242
HhaI GCGC 2 cut(s) 813, 1160
Hin1I GRCGYC 1 cut(s) 1253
Hin1II CATG 2 cut(s) 550, 641
Hin6I GCGC 2 cut(s) 811, 1158
HinP1I GCGC 2 cut(s) 811, 1158
HincII GTYRAC 1 cut(s) 911
HindII GTYRAC 1 cut(s) 911
HindIII AAGCTT 2 cut(s) 6, 674
HinfI GANTC 8 cut(s) 136, 293, 394, 747, 1124, 1199, 1205, 1235
HpaII CCGG 9 cut(s) 366, 538, 587, 906, 935, 974, 1019, 1094, 1222
HphI GGTGA 7 cut(s) 76, 100, 344, 353, 697, 718, 862
Hpy166II GTNNAC 6 cut(s) 271, 316, 322, 328, 726, 911
Hpy188I TCNGA 8 cut(s) 298, 415, 481, 787, 802, 970, 1204, 1270
Hpy188III TCNNGA 6 cut(s) 140, 231, 559, 744, 1153, 1194
Hpy8I GTNNAC 6 cut(s) 271, 316, 322, 328, 726, 911
HpyAV CCTTC 3 cut(s) 465, 688, 1243
HpyCH4III ACNGT 5 cut(s) 332, 358, 685, 1102, 1266
HpyCH4IV ACGT 4 cut(s) 312, 318, 324, 864
HpyCH4V TGCA 6 cut(s) 271, 832, 1041, 1135, 1173, 1242
HpyF3I CTNAG 3 cut(s) 120, 801, 914
HpySE526I ACGT 4 cut(s) 312, 318, 324, 864
Hsp92I GRCGYC 1 cut(s) 1253
Hsp92II CATG 2 cut(s) 550, 641
HspAI GCGC 2 cut(s) 811, 1158
KroI GCCGGC 1 cut(s) 934
KroNI GCCGGC 1 cut(s) 936
KspI CCGCGG 1 cut(s) 1086
Kzo9I GATC 3 cut(s) 620, 1149, 1270
LguI GCTCTTC 2 cut(s) 938, 1049
LmnI GCTCC 3 cut(s) 64, 746, 1093
Lsp1109I GCAGC 9 cut(s) 249, 501, 781, 936, 943, 1116, 1119, 1147, 1150
MaeII ACGT 4 cut(s) 312, 318, 324, 864
MaeIII GTNAC 4 cut(s) 82, 137, 1107, 1254
MalI GATC 3 cut(s) 622, 1151, 1272
MbiI CCGCTC 2 cut(s) 59, 1062
MboI GATC 3 cut(s) 620, 1149, 1270
MflI RGATCY 2 cut(s) 620, 1149
MhlI GDGCHC 1 cut(s) 273
MluCI AATT 2 cut(s) 500, 574
MlyI GAGTC 2 cut(s) 145, 302
MmeI TCCRAC 3 cut(s) 603, 777, 1248
MroNI GCCGGC 1 cut(s) 934
MroXI GAANNNNTTC 1 cut(s) 677
MseI TTAA 1 cut(s) 348
MslI CAYNNNNRTG 1 cut(s) 276
MspA1I CMGCKG 2 cut(s) 246, 1085
MspI CCGG 9 cut(s) 366, 538, 587, 906, 935, 974, 1019, 1094, 1222
MspR9I CCNGG 6 cut(s) 367, 539, 587, 950, 1095, 1222
MvaI CCWGG 1 cut(s) 950
MvnI CGCG 2 cut(s) 870, 1085
NaeI GCCGGC 1 cut(s) 936
NciI CCSGG 5 cut(s) 367, 539, 587, 1095, 1222
NdeII GATC 3 cut(s) 620, 1149, 1270
NgoMIV GCCGGC 1 cut(s) 934
NlaIII CATG 2 cut(s) 550, 641
NlaIV GGNNCC 6 cut(s) 444, 603, 622, 972, 1089, 1151
NmeAIII GCCGAG 1 cut(s) 1043
NmuCI GTSAC 4 cut(s) 82, 137, 1107, 1254
NspV TTCGAA 2 cut(s) 818, 875
PciSI GCTCTTC 2 cut(s) 938, 1049
PcsI WCGNNNNNNNCGW 7 cut(s) 138, 147, 156, 159, 162, 165, 315
PdiI GCCGGC 1 cut(s) 936
PdmI GAANNNNTTC 1 cut(s) 677
PfeI GAWTC 6 cut(s) 394, 747, 1124, 1199, 1205, 1235
PleI GAGTC 2 cut(s) 144, 301
PpsI GAGTC 2 cut(s) 144, 301
PshAI GACNNNNGTC 1 cut(s) 135
Psp6I CCWGG 1 cut(s) 948
PspGI CCWGG 1 cut(s) 948
PspN4I GGNNCC 6 cut(s) 444, 603, 622, 972, 1089, 1151
PspPI GGNCC 3 cut(s) 71, 173, 584
PstI CTGCAG 1 cut(s) 1137
PsuI RGATCY 2 cut(s) 620, 1149
RsaI GTAC 3 cut(s) 627, 839, 997
RsaNI GTAC 3 cut(s) 626, 838, 996
RseI CAYNNNNRTG 1 cut(s) 276
SacII CCGCGG 1 cut(s) 1086
SapI GCTCTTC 2 cut(s) 938, 1049
SaqAI TTAA 1 cut(s) 348
Sau3AI GATC 3 cut(s) 620, 1149, 1270
Sau96I GGNCC 3 cut(s) 71, 173, 584
ScaI AGTACT 2 cut(s) 839, 997
SchI GAGTC 2 cut(s) 145, 302
ScrFI CCNGG 6 cut(s) 367, 539, 587, 950, 1095, 1222
SduI GDGCHC 1 cut(s) 273
SfcI CTRYAG 2 cut(s) 1077, 1133
Sfr303I CCGCGG 1 cut(s) 1086
SfuI TTCGAA 2 cut(s) 818, 875
SgrBI CCGCGG 1 cut(s) 1086
SinI GGWCC 1 cut(s) 173
SmiMI CAYNNNNRTG 1 cut(s) 276
SmlI CTYRAG 3 cut(s) 20, 518, 557
SmoI CTYRAG 3 cut(s) 20, 518, 557
Sse9I AATT 2 cut(s) 500, 574
SspI AATATT 1 cut(s) 1015
StyD4I CCNGG 6 cut(s) 365, 537, 585, 948, 1093, 1220
StyI CCWWGG 1 cut(s) 492
TaaI ACNGT 5 cut(s) 332, 358, 685, 1102, 1266
TaiI ACGT 4 cut(s) 315, 321, 327, 867
TaqI TCGA 5 cut(s) 371, 401, 818, 875, 1226
TasI AATT 2 cut(s) 500, 574
TatI WGTACW 2 cut(s) 837, 995
TauI GCSGC 9 cut(s) 42, 95, 98, 101, 249, 980, 1062, 1085, 1088
TfiI GAWTC 6 cut(s) 394, 747, 1124, 1199, 1205, 1235
Tru1I TTAA 1 cut(s) 348
Tru9I TTAA 1 cut(s) 348
TscAI CASTG 1 cut(s) 361
TseFI GTSAC 4 cut(s) 82, 137, 1107, 1254
TseI GCWGC 9 cut(s) 237, 514, 794, 924, 931, 1129, 1132, 1135, 1138
Tsp45I GTSAC 4 cut(s) 82, 137, 1107, 1254
TspDTI ATGAA 2 cut(s) 535, 654
TspGWI ACGGA 4 cut(s) 186, 613, 614, 633
TspRI CASTG 1 cut(s) 361
VneI GTGCAC 1 cut(s) 269
VpaK11BI GGWCC 1 cut(s) 173
XcmI CCANNNNNNNNNTGG 1 cut(s) 227
XmnI GAANNNNTTC 1 cut(s) 677
ZrmI AGTACT 2 cut(s) 839, 997
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.