Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0004942

Physical Location & Seq

Genomic Coordinates Forward (+)

16658995 .. 16662955

Gene Structure 3961 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0195100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGTGGAAATCACCTGCCATATCCTATCTGGTTGGCCGTTTAACTCATCTTGGAGTTGTTAGGGCCCAAGTTCTGAGTTCTTCATACAGTACGGTGGCACAAGCTCAAGTATTTAACCATAGAACAGGAAAGGTTGTGGTGTCATCTGAGGATCAACACAGCAACCAAGGTAATGGTCATTTTCCTGAGAAAAATGCTGGAGGTCAAAACAGGAACCAAATTGGATGGAATGTTTCTATAAAGGATAAGGTCAACTTTCTTGTCAAAACACTTCTTGATCTCAATGATAGTAAGGAGGCTGTTTATGGTACTCTTGATGGATGGGCTGCATGGGAGCAAGACTTTCCTATTGGAAAACTTAAGATGGCATTGATTGCTCTTGAGAAGGAACAGCAGTGGCACAGAATTATTCAGGTGATTAAATGGATGCTAAGCAAGGGACAGGGAACCACCATGGGAACATATGGGCAACTAATACGCGCTTTAGATATGGACCAAAGACCAGAAGAAGCACATGAGTTCTGGCAGAAGAAGATTGGCATGGATCTGCATGCAGTTTCGTGGCAGTTATGCAAAAGCATGATGTCTATATACCATCGAAACAACATGTTGGAGAATCTCGTAAAGCTTTTTGAGGGTCTGGAAGCTTTTGATCGTAAACCACCACAGAAATCTATAGTCAGGAAAGTGGCGGATGCATATGAGATATTAGGCAGGCATGAAAAGAAAGAGAGGGTGTTGGAGAAGTACAATTATCTCTTCACTGAAGATCCATCACGGAAGAAACCTAGAAAGGTCTCATCTAAGGAGAAGAAGAAACTAGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0006605 GO:0006810 GO:0006886 GO:0006950 GO:0008104 GO:0008150 GO:0009266 GO:0009408 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009941 GO:0010035 GO:0010038 GO:0015031 GO:0015833 GO:0031967 GO:0031975 GO:0033036 GO:0033365 GO:0034613 GO:0042221 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045036 GO:0045184 GO:0046686 GO:0046907 GO:0048046 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0072596 GO:0072598

KEGG Pathways

Metabolic & Signaling

ko03040 ko04010 ko04141 ko04144 ko04213 ko04612 ko04915 ko05134 ko05145 ko05162 ko05164 ko05169 map03040 map04010 map04141 map04144 map04213 map04612 map04915 map05134 map05145 map05162 map05164 map05169

Pfam Domains

Protein Families

HSP70

Protein Analysis

275

Amino Acids

31.62

Weight (kDa)

9.63

Isoelectric Point (pI)

25.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004942)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24280 AT5G49910
fragaria_vesca	FvH4_5g28610 FvH4_5g28610 FvH4_5g28610 FvH4_5g28610 FvH4_7g07430
malus_domestica	MD08G1242400.v1.1 MD15G1436200.v1.1 MD15G1436300.v1.1
prunus_persica	Prupe.1G078200_v2.0.a1 Prupe.1G078200_v2.0.a1
pyrus_communis	pycom08g21030 pycom15g38490 pycom15g38500
rosa_chinensis	RchiOBHm_Chr1g0339531 RchiOBHm_Chr7g0220581
rosa_laevigata	RLG00000002216 RLG00000029235
rosa_multiflora	Rmu_sc0007322.1_g000002 Rmu_sc0010554.1_g000001 Rmu_ssc0000189.1_g000029
rosa_roxburghii	Rroxscaffold_3G00239290 Rroxscaffold_4G00313510
rosa_rugosa	Rorug01G0141100.1 Rorug07G0195100
rosa_samantha	Rh1CG147900 Rh7AG336100
rosa_wichuraiana	Rw1G013220 Rw7G028670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	22
Acc36I	ACCTGC	1 cut(s)	22
AccII	CGCG	1 cut(s)	480
AciI	CCGC	1 cut(s)	692
AclWI	GGATC	3 cut(s)	159, 552, 764
AcoI	YGGCCR	1 cut(s)	34
AcuI	CTGAAG	1 cut(s)	786
AfaI	GTAC	3 cut(s)	91, 310, 749
AflII	CTTAAG	1 cut(s)	359
AflIII	ACRYGT	1 cut(s)	606
AluBI	AGCT	3 cut(s)	104, 628, 647
AluI	AGCT	3 cut(s)	104, 628, 647
Alw26I	GTCTC	1 cut(s)	802
AlwI	GGATC	3 cut(s)	159, 552, 764
AoxI	GGCC	2 cut(s)	34, 63
ApaI	GGGCCC	1 cut(s)	67
ApeKI	GCWGC	1 cut(s)	326
AspLEI	GCGC	1 cut(s)	482
AspS9I	GGNCC	3 cut(s)	63, 64, 493
AsuHPI	GGTGA	2 cut(s)	3, 427
AvaII	GGWCC	1 cut(s)	493
BaeGI	GKGCMC	1 cut(s)	67
BanII	GRGCYC	1 cut(s)	67
BbvI	GCAGC	1 cut(s)	313
BccI	CCATC	6 cut(s)	219, 311, 315, 358, 603, 781
BceAI	ACGGC	1 cut(s)	21
BcoDI	GTCTC	1 cut(s)	802
BfaI	CTAG	2 cut(s)	789, 821
BfmI	CTRYAG	1 cut(s)	675
BfrI	CTTAAG	1 cut(s)	359
BfuAI	ACCTGC	1 cut(s)	22
BisI	GCNGC	1 cut(s)	327
BlpI	GCTNAGC	1 cut(s)	431
BlsI	GCNGC	1 cut(s)	328
Bme18I	GGWCC	1 cut(s)	493
BmgT120I	GGNCC	3 cut(s)	63, 64, 493
BmiI	GGNNCC	3 cut(s)	65, 215, 448
BmsI	GCATC	2 cut(s)	417, 685
BpmI	CTGGAG	1 cut(s)	219
Bpu1102I	GCTNAGC	1 cut(s)	431
BpuEI	CTTGAG	2 cut(s)	90, 401
BsaI	GGTCTC	1 cut(s)	802
BsaJI	CCNNGG	2 cut(s)	166, 453
BseDI	CCNNGG	2 cut(s)	166, 453
BseGI	GGATG	4 cut(s)	230, 326, 432, 700
BseMII	CTCAG	3 cut(s)	65, 138, 177
BseSI	GKGCMC	1 cut(s)	67
BseXI	GCAGC	1 cut(s)	313
Bsh1236I	CGCG	1 cut(s)	480
BshFI	GGCC	2 cut(s)	36, 65
BslFI	GGGAC	1 cut(s)	453
BsmAI	GTCTC	1 cut(s)	802
BsmFI	GGGAC	1 cut(s)	453
BsnI	GGCC	2 cut(s)	36, 65
Bso31I	GGTCTC	1 cut(s)	802
Bsp120I	GGGCCC	1 cut(s)	63
Bsp1286I	GDGCHC	1 cut(s)	67
Bsp143I	GATC	5 cut(s)	151, 277, 544, 652, 769
Bsp1720I	GCTNAGC	1 cut(s)	431
Bsp19I	CCATGG	1 cut(s)	453
BspACI	CCGC	1 cut(s)	692
BspANI	GGCC	2 cut(s)	36, 65
BspCNI	CTCAG	3 cut(s)	66, 139, 178
BspFNI	CGCG	1 cut(s)	480
BspLI	GGNNCC	3 cut(s)	65, 215, 448
BspMI	ACCTGC	1 cut(s)	22
BspPI	GGATC	3 cut(s)	159, 552, 764
BspTI	CTTAAG	1 cut(s)	359
BspTNI	GGTCTC	1 cut(s)	802
BssECI	CCNNGG	2 cut(s)	166, 453
BssMI	GATC	5 cut(s)	151, 277, 544, 652, 769
BssT1I	CCWWGG	2 cut(s)	166, 453
Bst4CI	ACNGT	2 cut(s)	89, 94
Bst6I	CTCTTC	1 cut(s)	764
BstAFI	CTTAAG	1 cut(s)	359
BstAPI	GCANNNNNTGC	1 cut(s)	374
BstC8I	GCNNGC	2 cut(s)	552, 716
BstDEI	CTNAG	5 cut(s)	74, 147, 186, 431, 804
BstDSI	CCRYGG	1 cut(s)	453
BstF5I	GGATG	4 cut(s)	230, 326, 432, 700
BstFNI	CGCG	1 cut(s)	480
BstHHI	GCGC	1 cut(s)	482
BstKTI	GATC	5 cut(s)	154, 280, 547, 655, 772
BstMAI	GTCTC	1 cut(s)	802
BstMBI	GATC	5 cut(s)	151, 277, 544, 652, 769
BstMWI	GCNNNNNNNGC	1 cut(s)	374
BstNSI	RCATGY	2 cut(s)	554, 610
BstSFI	CTRYAG	1 cut(s)	675
BstSLI	GKGCMC	1 cut(s)	67
BstUI	CGCG	1 cut(s)	480
BstV1I	GCAGC	1 cut(s)	313
BstX2I	RGATCY	2 cut(s)	544, 769
BstXI	CCANNNNNNTGG	1 cut(s)	173
BstYI	RGATCY	2 cut(s)	544, 769
BsuRI	GGCC	2 cut(s)	36, 65
BtgI	CCRYGG	1 cut(s)	453
BtsCI	GGATG	4 cut(s)	230, 326, 432, 700
BtsI	GCAGTG	1 cut(s)	401
BtsIMutI	CAGTG	2 cut(s)	401, 762
BveI	ACCTGC	1 cut(s)	22
Cac8I	GCNNGC	2 cut(s)	552, 716
CfoI	GCGC	1 cut(s)	482
Cfr13I	GGNCC	3 cut(s)	63, 64, 493
Csp6I	GTAC	3 cut(s)	90, 309, 748
CviAII	CATG	8 cut(s)	330, 454, 515, 541, 551, 580, 607, 719
CviJI	RGCY	7 cut(s)	36, 65, 104, 299, 326, 628, 647
CviKI_1	RGCY	7 cut(s)	36, 65, 104, 299, 326, 628, 647
CviQI	GTAC	3 cut(s)	90, 309, 748
DdeI	CTNAG	5 cut(s)	74, 147, 186, 431, 804
DpnI	GATC	5 cut(s)	153, 279, 546, 654, 771
DpnII	GATC	5 cut(s)	151, 277, 544, 652, 769
EaeI	YGGCCR	1 cut(s)	34
Eam1104I	CTCTTC	1 cut(s)	764
EarI	CTCTTC	1 cut(s)	764
EciI	GGCGGA	1 cut(s)	707
Eco130I	CCWWGG	2 cut(s)	166, 453
Eco24I	GRGCYC	1 cut(s)	67
Eco31I	GGTCTC	1 cut(s)	802
Eco47I	GGWCC	1 cut(s)	493
Eco57I	CTGAAG	1 cut(s)	786
EcoO109I	RGGNCCY	1 cut(s)	63
EcoT14I	CCWWGG	2 cut(s)	166, 453
EcoT22I	ATGCAT	1 cut(s)	700
EcoT38I	GRGCYC	1 cut(s)	67
ErhI	CCWWGG	2 cut(s)	166, 453
FaeI	CATG	8 cut(s)	333, 457, 518, 544, 554, 583, 610, 722
FalI	AAGNNNNNCTT	2 cut(s)	239, 271
FaqI	GGGAC	1 cut(s)	453
FatI	CATG	8 cut(s)	329, 453, 514, 540, 550, 579, 606, 718
FauNDI	CATATG	2 cut(s)	463, 700
Fnu4HI	GCNGC	1 cut(s)	327
FokI	GGATG	4 cut(s)	237, 333, 439, 707
FriOI	GRGCYC	1 cut(s)	67
Fsp4HI	GCNGC	1 cut(s)	327
FspBI	CTAG	2 cut(s)	789, 821
GlaI	GCGC	1 cut(s)	481
GluI	GCNGC	1 cut(s)	327
GsuI	CTGGAG	1 cut(s)	219
HaeIII	GGCC	2 cut(s)	36, 65
HhaI	GCGC	1 cut(s)	482
Hin1II	CATG	8 cut(s)	333, 457, 518, 544, 554, 583, 610, 722
Hin6I	GCGC	1 cut(s)	480
HinP1I	GCGC	1 cut(s)	480
HincII	GTYRAC	1 cut(s)	253
HindII	GTYRAC	1 cut(s)	253
HindIII	AAGCTT	2 cut(s)	626, 645
HinfI	GANTC	1 cut(s)	616
HphI	GGTGA	2 cut(s)	3, 427
Hpy166II	GTNNAC	2 cut(s)	253, 659
Hpy188I	TCNGA	2 cut(s)	75, 148
Hpy188III	TCNNGA	6 cut(s)	185, 275, 314, 380, 641, 682
Hpy8I	GTNNAC	2 cut(s)	253, 659
HpyAV	CCTTC	1 cut(s)	379
HpyCH4III	ACNGT	2 cut(s)	89, 94
HpyCH4V	TGCA	5 cut(s)	329, 550, 554, 573, 698
HpyF10VI	GCNNNNNNNGC	1 cut(s)	374
HpyF3I	CTNAG	5 cut(s)	74, 147, 186, 431, 804
Hsp92II	CATG	8 cut(s)	333, 457, 518, 544, 554, 583, 610, 722
HspAI	GCGC	1 cut(s)	480
Kzo9I	GATC	5 cut(s)	151, 277, 544, 652, 769
LmnI	GCTCC	1 cut(s)	334
Lsp1109I	GCAGC	1 cut(s)	313
LweI	GCATC	2 cut(s)	417, 685
MaeI	CTAG	2 cut(s)	789, 821
MalI	GATC	5 cut(s)	153, 279, 546, 654, 771
MboI	GATC	5 cut(s)	151, 277, 544, 652, 769
MboII	GAAGA	9 cut(s)	72, 518, 541, 544, 751, 779, 793, 823, 826
MflI	RGATCY	2 cut(s)	544, 769
MhlI	GDGCHC	1 cut(s)	67
MluCI	AATT	3 cut(s)	219, 405, 751
MmeI	TCCRAC	2 cut(s)	591, 720
MnlI	CCTC	5 cut(s)	142, 194, 289, 628, 726
Mph1103I	ATGCAT	1 cut(s)	700
MseI	TTAA	4 cut(s)	41, 114, 360, 420
MspCI	CTTAAG	1 cut(s)	359
MvnI	CGCG	1 cut(s)	480
MwoI	GCNNNNNNNGC	1 cut(s)	374
NcoI	CCATGG	1 cut(s)	453
NdeI	CATATG	2 cut(s)	463, 700
NdeII	GATC	5 cut(s)	151, 277, 544, 652, 769
NlaIII	CATG	8 cut(s)	333, 457, 518, 544, 554, 583, 610, 722
NlaIV	GGNNCC	3 cut(s)	65, 215, 448
NsiI	ATGCAT	1 cut(s)	700
NspI	RCATGY	2 cut(s)	554, 610
PaeI	GCATGC	1 cut(s)	554
PaqCI	CACCTGC	1 cut(s)	22
PciI	ACATGT	1 cut(s)	606
PfeI	GAWTC	1 cut(s)	616
PkrI	GCNGC	1 cut(s)	328
PscI	ACATGT	1 cut(s)	606
PspN4I	GGNNCC	3 cut(s)	65, 215, 448
PspOMI	GGGCCC	1 cut(s)	63
PspPI	GGNCC	3 cut(s)	63, 64, 493
PsuI	RGATCY	2 cut(s)	544, 769
RsaI	GTAC	3 cut(s)	91, 310, 749
RsaNI	GTAC	3 cut(s)	90, 309, 748
SaqAI	TTAA	4 cut(s)	41, 114, 360, 420
SatI	GCNGC	1 cut(s)	327
Sau3AI	GATC	5 cut(s)	151, 277, 544, 652, 769
Sau96I	GGNCC	3 cut(s)	63, 64, 493
SduI	GDGCHC	1 cut(s)	67
SfaNI	GCATC	2 cut(s)	417, 685
SfcI	CTRYAG	1 cut(s)	675
SinI	GGWCC	1 cut(s)	493
SmlI	CTYRAG	3 cut(s)	105, 359, 380
SmoI	CTYRAG	3 cut(s)	105, 359, 380
SphI	GCATGC	1 cut(s)	554
Sse9I	AATT	3 cut(s)	219, 405, 751
SsiI	CCGC	1 cut(s)	692
SspMI	CTAG	2 cut(s)	789, 821
StyI	CCWWGG	2 cut(s)	166, 453
TaaI	ACNGT	2 cut(s)	89, 94
TaqI	TCGA	1 cut(s)	598
TasI	AATT	3 cut(s)	219, 405, 751
TatI	WGTACW	1 cut(s)	747
TfiI	GAWTC	1 cut(s)	616
Tru1I	TTAA	4 cut(s)	41, 114, 360, 420
Tru9I	TTAA	4 cut(s)	41, 114, 360, 420
TscAI	CASTG	2 cut(s)	401, 769
TseI	GCWGC	1 cut(s)	326
TspDTI	ATGAA	2 cut(s)	72, 735
TspGWI	ACGGA	1 cut(s)	793
TspRI	CASTG	2 cut(s)	401, 769
Vha464I	CTTAAG	1 cut(s)	359
VpaK11BI	GGWCC	1 cut(s)	493
XceI	RCATGY	2 cut(s)	554, 610
XcmI	CCANNNNNNNNNTGG	1 cut(s)	25
XspI	CTAG	2 cut(s)	789, 821
Zsp2I	ATGCAT	1 cut(s)	700

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.