Rorug07G0239500
ERF Family

Belongs to the protein kinase superfamily. Ser Thr protein kinase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0009040
Physical Location & Seq
Forward (+)
22054465 .. 22055282
818 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0239500.1

Sequence Viewer

Length: 636 bp
ATGGCTGAGAAGACTCACCAGGCTTATCCTATAGCCCCAGCAAATGCTTACACAAGAAGTGATGGAGAATCTTTGGTATCTGAAGATGAGCTGAAACGCAAGAAGAGAATCAAGTTGTTTACCTACATTGGTATTTTCATTGTGTTTCAGATCATAGTGATGACCGTTTTTGGTCTCACTGTGATGAAAGTCAAGACCCCCAAGGCTAGATTGGGCGACATCAGTGTCCAAACTCTCAACTCCGTCCCTGCAACACCTTCATTCGATGCAATGTTCACAACCCAGATTAGGATCAAGAACACAAATTGGGGTCCATACAAGTTTGATGCAGGTAGTGCCACATTTCTGTACCAAGGAGTGGCTATTGGGCAGGTTGTGATTCCTAAGAGCAAGGCAGGAATGCATTCCACCAAGAAGATTAATGCAGAGGTCAGTGTGAATACTAATGCATTGCCGAGCAGTTCTACACTCGGCAGTGAATTGAACAGTGGGGTGTTGACACTGACCAGCCAGGTTCAATTGAAAGGAAAAGTCGAATTGATGCTCATCATGAAGAAAACCAAGAAGGCTTCTATGGAATGCACCATAACATTTGATTTGTTTTCAAAGACCGTCAAAGCTTTACAGTGCAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_6 LRR_8 Pkinase

Protein Analysis

211

Amino Acids

23.14

Weight (kDa)

9.83

Isoelectric Point (pI)

28.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_2 PF03168 96 - 195 1.3e-06 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 224
Acc36I ACCTGC 2 cut(s) 320, 361
AccB7I CCANNNNNTGG 1 cut(s) 358
AclWI GGATC 1 cut(s) 299
AcuI CTGAAG 1 cut(s) 102
AfaI GTAC 1 cut(s) 350
AfiI CCNNNNNNNGG 2 cut(s) 288, 358
AgsI TTSAA 4 cut(s) 484, 518, 523, 606
AjnI CCWGG 2 cut(s) 18, 510
AluBI AGCT 2 cut(s) 91, 620
AluI AGCT 2 cut(s) 91, 620
Alw26I GTCTC 1 cut(s) 179
AlwI GGATC 1 cut(s) 299
AseI ATTAAT 1 cut(s) 420
Asp700I GAANNNNTTC 1 cut(s) 403
AspS9I GGNCC 1 cut(s) 311
AsuHPI GGTGA 1 cut(s) 8
AvaII GGWCC 1 cut(s) 311
BbsI GAAGAC 1 cut(s) 17
BccI CCATC 1 cut(s) 56
BciT130I CCWGG 2 cut(s) 20, 512
BcoDI GTCTC 1 cut(s) 179
BfaI CTAG 1 cut(s) 207
BfmI CTRYAG 1 cut(s) 30
BfuAI ACCTGC 2 cut(s) 320, 361
Bme1390I CCNGG 2 cut(s) 20, 512
Bme18I GGWCC 1 cut(s) 311
BmgT120I GGNCC 1 cut(s) 311
BmiI GGNNCC 1 cut(s) 312
BmrFI CCNGG 2 cut(s) 20, 512
BmsI GCATC 3 cut(s) 256, 316, 531
BpiI GAAGAC 1 cut(s) 17
BsaBI GATNNNNATC 2 cut(s) 290, 545
BsaI GGTCTC 1 cut(s) 179
BsaJI CCNNGG 2 cut(s) 201, 352
Bsc4I CCNNNNNNNGG 2 cut(s) 288, 358
Bse3DI GCAATG 2 cut(s) 276, 449
Bse8I GATNNNNATC 2 cut(s) 290, 545
BseBI CCWGG 2 cut(s) 20, 512
BseDI CCNNGG 2 cut(s) 201, 352
BseJI GATNNNNATC 2 cut(s) 290, 545
BseLI CCNNNNNNNGG 2 cut(s) 288, 358
BseMI GCAATG 2 cut(s) 276, 449
BseYI CCCAGC 1 cut(s) 37
BslFI GGGAC 1 cut(s) 230
BslI CCNNNNNNNGG 2 cut(s) 288, 358
BsmAI GTCTC 1 cut(s) 179
BsmFI GGGAC 1 cut(s) 230
BsmI GAATGC 3 cut(s) 403, 405, 584
Bso31I GGTCTC 1 cut(s) 179
Bsp143I GATC 2 cut(s) 150, 291
BspHI TCATGA 1 cut(s) 549
BspLI GGNNCC 1 cut(s) 312
BspMI ACCTGC 2 cut(s) 320, 361
BspPI GGATC 1 cut(s) 299
BspTNI GGTCTC 1 cut(s) 179
BsrDI GCAATG 2 cut(s) 276, 449
BssECI CCNNGG 2 cut(s) 201, 352
BssMI GATC 2 cut(s) 150, 291
BssT1I CCWWGG 2 cut(s) 201, 352
Bst2UI CCWGG 2 cut(s) 20, 512
Bst4CI ACNGT 5 cut(s) 166, 181, 488, 613, 627
Bst6I CTCTTC 1 cut(s) 98
BstAPI GCANNNNNTGC 1 cut(s) 335
BstDEI CTNAG 2 cut(s) 6, 384
BstKTI GATC 2 cut(s) 153, 294
BstMAI GTCTC 1 cut(s) 179
BstMBI GATC 2 cut(s) 150, 291
BstMWI GCNNNNNNNGC 1 cut(s) 335
BstNI CCWGG 2 cut(s) 20, 512
BstSCI CCNGG 2 cut(s) 18, 510
BstSFI CTRYAG 1 cut(s) 30
BstV2I GAAGAC 1 cut(s) 17
BtsI GCAGTG 1 cut(s) 481
BtsIMutI CAGTG 7 cut(s) 177, 229, 439, 481, 493, 500, 632
BveI ACCTGC 2 cut(s) 320, 361
CciI TCATGA 1 cut(s) 549
Cfr13I GGNCC 1 cut(s) 311
Csp6I GTAC 1 cut(s) 349
CviAII CATG 1 cut(s) 550
CviJI RGCY 9 cut(s) 5, 23, 35, 91, 206, 362, 510, 569, 620
CviKI_1 RGCY 9 cut(s) 5, 23, 35, 91, 206, 362, 510, 569, 620
CviQI GTAC 1 cut(s) 349
DdeI CTNAG 2 cut(s) 6, 384
DpnI GATC 2 cut(s) 152, 293
DpnII GATC 2 cut(s) 150, 291
DrdI GACNNNNNNGTC 1 cut(s) 224
DseDI GACNNNNNNGTC 1 cut(s) 224
Eam1104I CTCTTC 1 cut(s) 98
EarI CTCTTC 1 cut(s) 98
Eco130I CCWWGG 2 cut(s) 201, 352
Eco31I GGTCTC 1 cut(s) 179
Eco47I GGWCC 1 cut(s) 311
Eco57I CTGAAG 1 cut(s) 102
EcoRII CCWGG 2 cut(s) 18, 510
EcoT14I CCWWGG 2 cut(s) 201, 352
EcoT22I ATGCAT 2 cut(s) 405, 451
ErhI CCWWGG 2 cut(s) 201, 352
FaeI CATG 1 cut(s) 553
FaiI YATR 6 cut(s) 32, 155, 316, 551, 575, 587
FaqI GGGAC 1 cut(s) 230
FatI CATG 1 cut(s) 549
FspBI CTAG 1 cut(s) 207
GsaI CCCAGC 1 cut(s) 41
Hin1II CATG 1 cut(s) 553
HincII GTYRAC 1 cut(s) 498
HindII GTYRAC 1 cut(s) 498
HindIII AAGCTT 1 cut(s) 618
HinfI GANTC 4 cut(s) 13, 68, 108, 379
HphI GGTGA 1 cut(s) 8
Hpy166II GTNNAC 3 cut(s) 120, 276, 498
Hpy188I TCNGA 2 cut(s) 82, 150
Hpy188III TCNNGA 3 cut(s) 193, 295, 550
Hpy8I GTNNAC 3 cut(s) 120, 276, 498
HpyAV CCTTC 2 cut(s) 267, 559
HpyCH4III ACNGT 5 cut(s) 166, 181, 488, 613, 627
HpyCH4V TGCA 8 cut(s) 251, 269, 329, 403, 425, 449, 582, 630
HpyF10VI GCNNNNNNNGC 1 cut(s) 335
HpyF3I CTNAG 2 cut(s) 6, 384
Hsp92II CATG 1 cut(s) 553
Kzo9I GATC 2 cut(s) 150, 291
LweI GCATC 3 cut(s) 256, 316, 531
MaeI CTAG 1 cut(s) 207
MalI GATC 2 cut(s) 152, 293
MboI GATC 2 cut(s) 150, 291
MboII GAAGA 5 cut(s) 22, 95, 115, 427, 565
MfeI CAATTG 1 cut(s) 518
MluCI AATT 4 cut(s) 304, 479, 518, 536
MlyI GAGTC 1 cut(s) 7
MnlI CCTC 1 cut(s) 421
Mph1103I ATGCAT 2 cut(s) 405, 451
MroXI GAANNNNTTC 1 cut(s) 403
MseI TTAA 1 cut(s) 420
MslI CAYNNNNRTG 2 cut(s) 158, 182
MspR9I CCNGG 2 cut(s) 20, 512
MunI CAATTG 1 cut(s) 518
Mva1269I GAATGC 3 cut(s) 403, 405, 584
MvaI CCWGG 2 cut(s) 20, 512
MwoI GCNNNNNNNGC 1 cut(s) 335
NdeII GATC 2 cut(s) 150, 291
NlaIII CATG 1 cut(s) 553
NlaIV GGNNCC 1 cut(s) 312
NmeAIII GCCGAG 2 cut(s) 450, 480
NsiI ATGCAT 2 cut(s) 405, 451
PagI TCATGA 1 cut(s) 549
PctI GAATGC 3 cut(s) 403, 405, 584
PdmI GAANNNNTTC 1 cut(s) 403
PfeI GAWTC 3 cut(s) 68, 108, 379
PflMI CCANNNNNTGG 1 cut(s) 358
PleI GAGTC 1 cut(s) 7
PpsI GAGTC 1 cut(s) 7
PshBI ATTAAT 1 cut(s) 420
Psp6I CCWGG 2 cut(s) 18, 510
PspFI CCCAGC 1 cut(s) 37
PspGI CCWGG 2 cut(s) 18, 510
PspN4I GGNNCC 1 cut(s) 312
PspPI GGNCC 1 cut(s) 311
RsaI GTAC 1 cut(s) 350
RsaNI GTAC 1 cut(s) 349
RseI CAYNNNNRTG 2 cut(s) 158, 182
SaqAI TTAA 1 cut(s) 420
Sau3AI GATC 2 cut(s) 150, 291
Sau96I GGNCC 1 cut(s) 311
SchI GAGTC 1 cut(s) 7
ScrFI CCNGG 2 cut(s) 20, 512
SetI ASST 8 cut(s) 93, 125, 259, 334, 375, 432, 516, 622
SfaNI GCATC 3 cut(s) 256, 316, 531
SfcI CTRYAG 1 cut(s) 30
SinI GGWCC 1 cut(s) 311
SmiMI CAYNNNNRTG 2 cut(s) 158, 182
Sse9I AATT 4 cut(s) 304, 479, 518, 536
SspMI CTAG 1 cut(s) 207
StyD4I CCNGG 2 cut(s) 18, 510
StyI CCWWGG 2 cut(s) 201, 352
TaaI ACNGT 5 cut(s) 166, 181, 488, 613, 627
TaqI TCGA 2 cut(s) 264, 534
TasI AATT 4 cut(s) 304, 479, 518, 536
TfiI GAWTC 3 cut(s) 68, 108, 379
Tru1I TTAA 1 cut(s) 420
Tru9I TTAA 1 cut(s) 420
TscAI CASTG 7 cut(s) 184, 229, 439, 481, 493, 507, 632
TspDTI ATGAA 4 cut(s) 127, 200, 249, 566
TspGWI ACGGA 1 cut(s) 232
TspRI CASTG 7 cut(s) 184, 229, 439, 481, 493, 507, 632
Van91I CCANNNNNTGG 1 cut(s) 358
VpaK11BI GGWCC 1 cut(s) 311
VspI ATTAAT 1 cut(s) 420
XcmI CCANNNNNNNNNTGG 1 cut(s) 208
XmnI GAANNNNTTC 1 cut(s) 403
XspI CTAG 1 cut(s) 207
Zsp2I ATGCAT 2 cut(s) 405, 451
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.