Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0015110

Physical Location & Seq

Genomic Coordinates Forward (+)

22682877 .. 22684124

Gene Structure 1248 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0245300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1248 bp

ATGGTAGAAGAGCTCATTGACAAGGACACTCGATCCTGGGTCCTAGATAGTATTCTACACTTAATCCAGCCCTCGGAGATGAGTAAAGTTCTTTCCATTCCTATAGGGAGAGGGACTGGGAGAGACATGACTGTTTGGAATCTAACCAAGGATGGGGTGTATACTGTGAAGTCCGGCTACCACCGAATTCATCAAGAGCTAGTTCCTTGTTTTGGAGTGGAGGACTATGGCCCTTCACACTTTATTGACCCAAAGTGCTGGAAGTTGATCTGGAAGATTTCCACCCTACCAAAAGTAAAGCTTTTTTTCTGGAGAGCTTTGAACAAAGCCGTTCCAACTTTCTTCAATCTCTTCAGAAGAAAACTCACTAGCTCCCCAATATGTCCAATTTGTGGTGTGGGTGAGGAAACAATTGAACACGTCCTACTTCTATGTCCTTGGGTTGAGCTAGTCTGGTTTGGATCCCCTCTGGGTCTAAAAATTGATAAACAAAGAATCACTACTCTAGACCATTGGTTATATACTATTGCTACATCTCATAAAGCTACTGAGGAGAAGAGTTGGGTACTTACTTTGATTAGCTTCATCTGCTGGTCTATTTGGAAAGCAAGATGCAATTTTGTGTATAAGCACTTTCAGCCTTCCCCAACCCTGGTGATTGGCCTCAGCTCCTGTTCGGCTACGGAATTCAGAAGTACTTCACTCACCATCATGACAAAACGGAGTGCAAATGGGATTCCGGTCTGGACTCCCCCACCCCCAGGGGTTGCTGTCATGAATGTTGATGCGGCCTGGAGGAATACTGACAAGGGTGGTCTAGGAGTGGTGATCCAAGACCATAATAGGGCGGTACTAGGGGGAGGAGCCTCATCCTCCCACTCCTGCTCAGTTGAAGTTGCTGAAGCCCAGGCTATCCTTCTGGGTTTGAATATGGCTGTCGATTTGAACCTGAAACGCTTTAGATTGCAGTCAGACTCTCTCAATCTAATCTTAGATTTGAATTCGATTGGCAAGGGTAAGAACTGGAAAAATCATCTGATTATAGAGGAAATCAAATGGAGGAAGAACTTTTTTGAACAAGTGGATTGGGAATGGATTCCCCGGGAAGCAAATCGAGCAGCTCATGAAGCTGCCTTGCTTGGTAATAGGACGTTGGGTCTTTGCAGATGGGCTACTTCGCCAGCACCGTCTCTCACTTTGGTACTAAGGAATGATGGGTTGTCTTGTCCTCCCACTGTTGCATTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005783 GO:0005829 GO:0007154 GO:0007165 GO:0008150 GO:0009987 GO:0012505 GO:0016020 GO:0016021 GO:0019722 GO:0019932 GO:0023052 GO:0031224 GO:0031974 GO:0031981 GO:0035556 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

C2 PRT_C

Protein Analysis

415

Amino Acids

46.67

Weight (kDa)

8.98

Isoelectric Point (pI)

43.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RVT	PF13966	79 - 152	1.1e-16	zinc-binding in reverse transcriptase
RVT_3	PF13456	260 - 378	6.8e-22	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015110)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22610
fragaria_vesca	FvH4_5g32020
malus_domestica	MD08G1219200.v1.1 MD15G1407800.v1.1
prunus_persica	Prupe.1G553800_v2.0.a1
pyrus_communis	pycom08g19020 pycom15g36390
rosa_chinensis	RchiOBHm_Chr7g0228021
rosa_laevigata	RLG00000001595
rosa_multiflora	Rmu_sc0004858.1_g000016
rosa_rugosa	Rorug07G0245300
rosa_samantha	Rh7AG399300 Rh7BG380700 Rh7CG417200 Rh7DG394800
rosa_wichuraiana	Rw7G033170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	392
AccI	GTMKAC	1 cut(s)	161
AciI	CCGC	2 cut(s)	788, 848
AclWI	GGATC	4 cut(s)	27, 456, 469, 823
AcsI	RAATTY	3 cut(s)	186, 686, 1000
AcuI	CTGAAG	2 cut(s)	337, 921
AfaI	GTAC	4 cut(s)	567, 697, 852, 1203
AfiI	CCNNNNNNNGG	7 cut(s)	73, 153, 212, 392, 652, 761, 844
AflIII	ACRYGT	1 cut(s)	418
AgsI	TTSAA	8 cut(s)	322, 346, 416, 893, 928, 946, 1000, 1076
AhdI	GACNNNNNGTC	1 cut(s)	1155
AjiI	CACGTC	1 cut(s)	421
AjnI	CCWGG	5 cut(s)	35, 651, 760, 791, 906
Alw21I	GWGCWC	1 cut(s)	15
Alw26I	GTCTC	2 cut(s)	117, 1194
AlwI	GGATC	4 cut(s)	27, 456, 469, 823
AlwNI	CAGNNNCTG	1 cut(s)	672
Ama87I	CYCGRG	1 cut(s)	1101
AoxI	GGCC	3 cut(s)	229, 661, 789
ApeKI	GCWGC	2 cut(s)	1118, 1130
ApoI	RAATTY	3 cut(s)	186, 686, 1000
Asp700I	GAANNNNTTC	2 cut(s)	697, 1095
AspS9I	GGNCC	2 cut(s)	40, 230
AsuC2I	CCSGG	2 cut(s)	1102, 1103
AsuHPI	GGTGA	4 cut(s)	413, 667, 697, 838
AvaI	CYCGRG	1 cut(s)	1101
AvaII	GGWCC	1 cut(s)	40
BamHI	GGATCC	1 cut(s)	461
BanII	GRGCYC	1 cut(s)	15
BarI	GAAGNNNNNNTAC	2 cut(s)	161, 193
Bbv12I	GWGCWC	1 cut(s)	15
BbvCI	CCTCAGC	1 cut(s)	665
BbvI	GCAGC	2 cut(s)	1117, 1130
BccI	CCATC	4 cut(s)	146, 716, 1161, 1208
BceAI	ACGGC	1 cut(s)	314
BciT130I	CCWGG	5 cut(s)	37, 653, 762, 793, 908
BcnI	CCSGG	2 cut(s)	1102, 1103
BcoDI	GTCTC	2 cut(s)	117, 1194
BfaI	CTAG	7 cut(s)	44, 200, 369, 449, 506, 818, 854
BfmI	CTRYAG	1 cut(s)	102
BisI	GCNGC	3 cut(s)	789, 1119, 1131
BlsI	GCNGC	3 cut(s)	790, 1120, 1132
BmcAI	AGTACT	1 cut(s)	697
Bme1390I	CCNGG	7 cut(s)	37, 653, 762, 793, 908, 1102, 1103
Bme18I	GGWCC	1 cut(s)	40
BmeRI	GACNNNNNGTC	1 cut(s)	1155
BmeT110I	CYCGRG	1 cut(s)	1101
BmgBI	CACGTC	1 cut(s)	421
BmgT120I	GGNCC	2 cut(s)	40, 230
BmiI	GGNNCC	3 cut(s)	41, 463, 865
BmrFI	CCNGG	7 cut(s)	37, 653, 762, 793, 908, 1102, 1103
BmrI	ACTGGG	1 cut(s)	126
BmsI	GCATC	2 cut(s)	602, 775
BmuI	ACTGGG	1 cut(s)	126
BpmI	CTGGAG	2 cut(s)	331, 814
Bpu10I	CCTNAGC	1 cut(s)	665
BpuMI	CCSGG	2 cut(s)	1102, 1103
BsaWI	WCCGGW	1 cut(s)	739
Bsc4I	CCNNNNNNNGG	7 cut(s)	73, 153, 212, 392, 652, 761, 844
Bse1I	ACTGG	2 cut(s)	121, 1028
BseBI	CCWGG	5 cut(s)	37, 653, 762, 793, 908
BseGI	GGATG	2 cut(s)	157, 869
BseLI	CCNNNNNNNGG	7 cut(s)	73, 153, 212, 392, 652, 761, 844
BseMII	CTCAG	3 cut(s)	540, 679, 900
BseNI	ACTGG	2 cut(s)	121, 1028
BseRI	GAGGAG	2 cut(s)	566, 876
BseXI	GCAGC	2 cut(s)	1117, 1130
BshFI	GGCC	3 cut(s)	231, 663, 791
BsiHKAI	GWGCWC	1 cut(s)	15
BsiHKCI	CYCGRG	1 cut(s)	1101
BsiSI	CCGG	3 cut(s)	174, 740, 1102
BslFI	GGGAC	1 cut(s)	127
BslI	CCNNNNNNNGG	7 cut(s)	73, 153, 212, 392, 652, 761, 844
BsmAI	GTCTC	2 cut(s)	117, 1194
BsmBI	CGTCTC	1 cut(s)	1194
BsmFI	GGGAC	1 cut(s)	127
BsnI	GGCC	3 cut(s)	231, 663, 791
BsoBI	CYCGRG	1 cut(s)	1101
Bsp1286I	GDGCHC	1 cut(s)	15
Bsp143I	GATC	4 cut(s)	32, 267, 461, 828
BspACI	CCGC	2 cut(s)	788, 848
BspANI	GGCC	3 cut(s)	231, 663, 791
BspCNI	CTCAG	3 cut(s)	541, 678, 899
BspHI	TCATGA	3 cut(s)	711, 774, 1123
BspLI	GGNNCC	3 cut(s)	41, 463, 865
BspPI	GGATC	4 cut(s)	27, 456, 469, 823
BspQI	GCTCTTC	1 cut(s)	3
BsrI	ACTGG	2 cut(s)	121, 1028
BssMI	GATC	4 cut(s)	32, 267, 461, 828
BssNAI	GTATAC	1 cut(s)	162
BssT1I	CCWWGG	2 cut(s)	147, 437
Bst1107I	GTATAC	1 cut(s)	162
Bst2UI	CCWGG	5 cut(s)	37, 653, 762, 793, 908
Bst4CI	ACNGT	4 cut(s)	133, 166, 1188, 1237
Bst6I	CTCTTC	3 cut(s)	3, 356, 551
BstC8I	GCNNGC	1 cut(s)	1182
BstDEI	CTNAG	5 cut(s)	549, 665, 886, 991, 1205
BstF5I	GGATG	2 cut(s)	157, 869
BstKTI	GATC	4 cut(s)	35, 270, 464, 831
BstMAI	GTCTC	2 cut(s)	117, 1194
BstMBI	GATC	4 cut(s)	32, 267, 461, 828
BstMWI	GCNNNNNNNGC	4 cut(s)	588, 637, 1115, 1127
BstNI	CCWGG	5 cut(s)	37, 653, 762, 793, 908
BstSCI	CCNGG	7 cut(s)	35, 651, 760, 791, 906, 1100, 1101
BstSFI	CTRYAG	1 cut(s)	102
BstV1I	GCAGC	2 cut(s)	1117, 1130
BstX2I	RGATCY	1 cut(s)	461
BstXI	CCANNNNNNTGG	1 cut(s)	258
BstYI	RGATCY	1 cut(s)	461
BstZ17I	GTATAC	1 cut(s)	162
BsuRI	GGCC	3 cut(s)	231, 663, 791
BtrI	CACGTC	1 cut(s)	421
BtsCI	GGATG	2 cut(s)	157, 869
BtsIMutI	CAGTG	1 cut(s)	1233
Cac8I	GCNNGC	1 cut(s)	1182
CaiI	CAGNNNCTG	1 cut(s)	672
CciI	TCATGA	3 cut(s)	711, 774, 1123
Cfr13I	GGNCC	2 cut(s)	40, 230
Cfr9I	CCCGGG	1 cut(s)	1101
Csp6I	GTAC	4 cut(s)	566, 696, 851, 1202
CviAII	CATG	4 cut(s)	127, 712, 775, 1124
CviQI	GTAC	4 cut(s)	566, 696, 851, 1202
DdeI	CTNAG	5 cut(s)	549, 665, 886, 991, 1205
DpnI	GATC	4 cut(s)	34, 269, 463, 830
DpnII	GATC	4 cut(s)	32, 267, 461, 828
DriI	GACNNNNNGTC	1 cut(s)	1155
Eam1104I	CTCTTC	3 cut(s)	3, 356, 551
Eam1105I	GACNNNNNGTC	1 cut(s)	1155
EarI	CTCTTC	3 cut(s)	3, 356, 551
Ecl136II	GAGCTC	1 cut(s)	13
Eco130I	CCWWGG	2 cut(s)	147, 437
Eco24I	GRGCYC	1 cut(s)	15
Eco47I	GGWCC	1 cut(s)	40
Eco53kI	GAGCTC	1 cut(s)	13
Eco57I	CTGAAG	2 cut(s)	337, 921
Eco88I	CYCGRG	1 cut(s)	1101
EcoICRI	GAGCTC	1 cut(s)	13
EcoO109I	RGGNCCY	1 cut(s)	40
EcoRI	GAATTC	3 cut(s)	186, 686, 1000
EcoRII	CCWGG	5 cut(s)	35, 651, 760, 791, 906
EcoT14I	CCWWGG	2 cut(s)	147, 437
EcoT38I	GRGCYC	1 cut(s)	15
ErhI	CCWWGG	2 cut(s)	147, 437
Esp3I	CGTCTC	1 cut(s)	1194
FaeI	CATG	4 cut(s)	130, 715, 778, 1127
FalI	AAGNNNNNCTT	2 cut(s)	285, 317
FaqI	GGGAC	1 cut(s)	127
FatI	CATG	4 cut(s)	126, 711, 774, 1123
FblI	GTMKAC	1 cut(s)	161
Fnu4HI	GCNGC	3 cut(s)	789, 1119, 1131
FokI	GGATG	2 cut(s)	164, 856
FriOI	GRGCYC	1 cut(s)	15
Fsp4HI	GCNGC	3 cut(s)	789, 1119, 1131
FspBI	CTAG	7 cut(s)	44, 200, 369, 449, 506, 818, 854
GluI	GCNGC	3 cut(s)	789, 1119, 1131
GsuI	CTGGAG	2 cut(s)	331, 814
HaeIII	GGCC	3 cut(s)	231, 663, 791
HapII	CCGG	3 cut(s)	174, 740, 1102
Hin1II	CATG	4 cut(s)	130, 715, 778, 1127
HindIII	AAGCTT	1 cut(s)	299
HinfI	GANTC	6 cut(s)	139, 495, 736, 748, 974, 1096
HpaII	CCGG	3 cut(s)	174, 740, 1102
HphI	GGTGA	4 cut(s)	413, 667, 697, 838
Hpy166II	GTNNAC	1 cut(s)	162
Hpy188I	TCNGA	5 cut(s)	76, 356, 692, 973, 1038
Hpy188III	TCNNGA	8 cut(s)	194, 271, 310, 506, 712, 745, 775, 1124
Hpy8I	GTNNAC	1 cut(s)	162
HpyAV	CCTTC	3 cut(s)	243, 651, 926
HpyCH4III	ACNGT	4 cut(s)	133, 166, 1188, 1237
HpyCH4IV	ACGT	2 cut(s)	420, 1151
HpyCH4V	TGCA	5 cut(s)	615, 728, 967, 1164, 1241
HpyF10VI	GCNNNNNNNGC	4 cut(s)	588, 637, 1115, 1127
HpyF3I	CTNAG	5 cut(s)	549, 665, 886, 991, 1205
HpySE526I	ACGT	2 cut(s)	420, 1151
Hsp92II	CATG	4 cut(s)	130, 715, 778, 1127
Kzo9I	GATC	4 cut(s)	32, 267, 461, 828
LguI	GCTCTTC	1 cut(s)	3
LmnI	GCTCC	3 cut(s)	377, 674, 863
Lsp1109I	GCAGC	2 cut(s)	1117, 1130
LweI	GCATC	2 cut(s)	602, 775
MaeI	CTAG	7 cut(s)	44, 200, 369, 449, 506, 818, 854
MaeII	ACGT	2 cut(s)	420, 1151
MalI	GATC	4 cut(s)	34, 269, 463, 830
MboI	GATC	4 cut(s)	32, 267, 461, 828
MboII	GAAGA	7 cut(s)	20, 286, 334, 343, 369, 568, 1075
MfeI	CAATTG	1 cut(s)	411
MflI	RGATCY	1 cut(s)	461
MhlI	GDGCHC	1 cut(s)	15
MluCI	AATT	7 cut(s)	186, 387, 411, 480, 616, 686, 1000
MlyI	GAGTC	2 cut(s)	742, 968
MmeI	TCCRAC	1 cut(s)	359
MroXI	GAANNNNTTC	2 cut(s)	697, 1095
MseI	TTAA	1 cut(s)	62
MslI	CAYNNNNRTG	1 cut(s)	710
MspI	CCGG	3 cut(s)	174, 740, 1102
MspR9I	CCNGG	7 cut(s)	37, 653, 762, 793, 908, 1102, 1103
MunI	CAATTG	1 cut(s)	411
MvaI	CCWGG	5 cut(s)	37, 653, 762, 793, 908
MwoI	GCNNNNNNNGC	4 cut(s)	588, 637, 1115, 1127
NciI	CCSGG	2 cut(s)	1102, 1103
NdeII	GATC	4 cut(s)	32, 267, 461, 828
NlaIII	CATG	4 cut(s)	130, 715, 778, 1127
NlaIV	GGNNCC	3 cut(s)	41, 463, 865
PagI	TCATGA	3 cut(s)	711, 774, 1123
PasI	CCCWGGG	1 cut(s)	761
PciSI	GCTCTTC	1 cut(s)	3
PcsI	WCGNNNNNNNCGW	1 cut(s)	1184
PdmI	GAANNNNTTC	2 cut(s)	697, 1095
PfeI	GAWTC	4 cut(s)	139, 495, 736, 1096
PflMI	CCANNNNNTGG	1 cut(s)	392
PkrI	GCNGC	3 cut(s)	790, 1120, 1132
PleI	GAGTC	2 cut(s)	742, 968
PpsI	GAGTC	2 cut(s)	742, 968
PpuMI	RGGWCCY	1 cut(s)	40
Psp124BI	GAGCTC	1 cut(s)	15
Psp5II	RGGWCCY	1 cut(s)	40
Psp6I	CCWGG	5 cut(s)	35, 651, 760, 791, 906
PspGI	CCWGG	5 cut(s)	35, 651, 760, 791, 906
PspN4I	GGNNCC	3 cut(s)	41, 463, 865
PspPI	GGNCC	2 cut(s)	40, 230
PspPPI	RGGWCCY	1 cut(s)	40
PsrI	GAACNNNNNNTAC	2 cut(s)	408, 440
PstNI	CAGNNNCTG	1 cut(s)	672
PsuI	RGATCY	1 cut(s)	461
RsaI	GTAC	4 cut(s)	567, 697, 852, 1203
RsaNI	GTAC	4 cut(s)	566, 696, 851, 1202
RseI	CAYNNNNRTG	1 cut(s)	710
SacI	GAGCTC	1 cut(s)	15
SapI	GCTCTTC	1 cut(s)	3
SaqAI	TTAA	1 cut(s)	62
SatI	GCNGC	3 cut(s)	789, 1119, 1131
Sau3AI	GATC	4 cut(s)	32, 267, 461, 828
Sau96I	GGNCC	2 cut(s)	40, 230
ScaI	AGTACT	1 cut(s)	697
SchI	GAGTC	2 cut(s)	742, 968
ScrFI	CCNGG	7 cut(s)	37, 653, 762, 793, 908, 1102, 1103
SduI	GDGCHC	1 cut(s)	15
SfaNI	GCATC	2 cut(s)	602, 775
SfcI	CTRYAG	1 cut(s)	102
SinI	GGWCC	1 cut(s)	40
SmaI	CCCGGG	1 cut(s)	1103
SmiMI	CAYNNNNRTG	1 cut(s)	710
Sse9I	AATT	7 cut(s)	186, 387, 411, 480, 616, 686, 1000
SsiI	CCGC	2 cut(s)	788, 848
SspMI	CTAG	7 cut(s)	44, 200, 369, 449, 506, 818, 854
SstI	GAGCTC	1 cut(s)	15
StyD4I	CCNGG	7 cut(s)	35, 651, 760, 791, 906, 1100, 1101
StyI	CCWWGG	2 cut(s)	147, 437
TaaI	ACNGT	4 cut(s)	133, 166, 1188, 1237
TaiI	ACGT	2 cut(s)	423, 1154
TaqI	TCGA	4 cut(s)	31, 939, 1004, 1114
TasI	AATT	7 cut(s)	186, 387, 411, 480, 616, 686, 1000
TatI	WGTACW	1 cut(s)	695
TauI	GCSGC	1 cut(s)	791
TfiI	GAWTC	4 cut(s)	139, 495, 736, 1096
Tru1I	TTAA	1 cut(s)	62
Tru9I	TTAA	1 cut(s)	62
TscAI	CASTG	1 cut(s)	1240
TseI	GCWGC	2 cut(s)	1118, 1130
TspDTI	ATGAA	4 cut(s)	179, 574, 791, 1140
TspGWI	ACGGA	2 cut(s)	698, 736
TspMI	CCCGGG	1 cut(s)	1101
TspRI	CASTG	1 cut(s)	1240
Van91I	CCANNNNNTGG	1 cut(s)	392
VpaK11BI	GGWCC	1 cut(s)	40
XapI	RAATTY	3 cut(s)	186, 686, 1000
XbaI	TCTAGA	1 cut(s)	505
XmaI	CCCGGG	1 cut(s)	1101
XmiI	GTMKAC	1 cut(s)	161
XmnI	GAANNNNTTC	2 cut(s)	697, 1095
XspI	CTAG	7 cut(s)	44, 200, 369, 449, 506, 818, 854
ZrmI	AGTACT	1 cut(s)	697

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.