Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0015110

Physical Location & Seq

Genomic Coordinates Forward (+)

53867362 .. 53871035

Gene Structure 3674 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG417200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3054 bp

ATGATCAAACTTATAGTCGAAGTTCATGACGCCGGCGACCTCATGCCCAAAGACGGCGACGGCTTCGCCAGTCCCTTTGTGGAAGTAGACTTCGACCAGCAGAAACAGAGGACACGGACCAAGCCCAAAGACCTCAACCCTCAGTGGAACGAGCACCTGGTGTTTAACGTCACCGACCCAAGAGACCTTCCCAACAAGACCATCGAAGTGGTTGTCTACAATGACAGAAAAGCAGGCCACCACAAGAACTTTCTTGGCCGGGTCCGAATCTCCGGCGTCTCCGTCCCTCTGTCGGAGTCAGAAGCCACGGTGCAGCGTTACCCACTTGACAAAAGGGGCTTGTTTTCCAACATCAAAGGTGACATCGCTCTTCGAATCTATGCGGTTCAGGATTCGGGTAGCGCTCCTCAGCCACAGCAACAGGAATATGAAATCAATGGTAATACTCATAGGATGATGGATGAAGAAGCGGAGCATCATCACATGGCTGAGAAGATGATGAAGAAGAAGAAGGAACAGGAAGTGAGAACTTTTCACTCTATTGGAACAGGAGGTGCTGCTGCTGCTGCTGCTTCTTTCTCTCATGCCCATCCACCTTCATCCGGGTTTGGGTTAGAAACCCACCACCAAAAAGCACCCCAAGTTGAAACGAGGACGGATTTCGCCCGGGCGGGTCCGGGTCCGGGTGCTGCCACGGTTATGCAGATGCAGGGACCTCCGAGGCAGAACCCGGAGTATGCGTTGGTGGAGACCAGTCCACCACTGGCGGCCCGCCTCCGGTATAGACCTGGCGGGTATACAGGGGATAAGACCTCCAGCACATATGATTTGGTGGAGCAGATGCATTACTTGTATGTGAGTGTGGTGAAGGCTAGAGATCTTCCAACCATGGATGTGACTGGAAGCCTTGATCCTTATGTGGAAGTGAAGCTTGGGAACTACAAGGGAGTCACGAGGCACTTGGACAAGAATCAAAACCCGGTGTGGAACCAGATTTTCGCTTTCTCCAAGGAGAGGCTGCAGTCGAATTTGGTGGAAGTTACTGTGAAAGACAAGGATGTTTTGAAGGATGATCATGTGGGGAGAGTTTTATTTGATCTCACAGATGTCCCAGTTCGAGTTCCGCCGGATAGTCCTCTTGCTCCTCAGTGGTACAGATTGGAGGACAAGCATGGGGTCAAGGTTAGAGGGGAGATCATGCTTGCTGTTTGGATTGGGACTCAAGCTGATGAGTCATTTTCTGATGCTTGGCATTCTGATGCACATGACATTAGCCATGGCAATCTTGCTAGCACAAGATCAAAGGTTTACTTCTCACCGAAACTATATTATCTTAGAGTTCAAGTTCTTGAAGCTCAGGACCTTGTCCCTTTAGACAGAAGCAGAGCTCCGGACACATATGTGAAGATACAGCTTGGTAATCAGATGAGGGTCTCAAGGCCTTCCCAAGTTCGTACCATTAACCCTATTTGGAATGATGAGCTCATGTTGGTTGCATCTGAGCCATTAACCCAAGAAGTCTTAGTCATAGCGGTGGGTGACAAGATTGGACCTGGCAAGGATGACCTGTTAGGAATAGTGTATCTTCCGGTTAGAGACCTTCCACAAAGACTGGACCATCATAAGCTTCCTGAGCCTCGCTGGTACAATCTCCAGAAGCCTTCAATGGCAGGTGAACAGGAAAGTGAGAAAAAGAAAGAGAAGTTTTCGAGCAAGATTCATCTCCGTCTCTGTTTGGATGCAGGGTATCATGTTCTTGATGAGTCTACACATTTTAGCAGTGACCTTCAGCCTTCCTCCAAGCACCTGAGGAAAGCAAACATTGGAATTCTGGAACTTGGGATTCTCAGTGCCAAGAATTTGCTCCCTATGAAGGGTAGGGAGGGTAGGACTACTGATTCATACTGTGTGGCCAAGTATGGGAACAAATGGATTCGAACTAGAACACTTCTCAACACTCTGAACCCTCGCTGGAATGAGCAGTATACTTGGGAAGTGTATGATCCATGTACTGTCATCACCGTTGGTGTTTTCGACAATCATCATATCAATGGAAGCCATGAAGACTCGAGGGACCAGAGGATTGGGAAGGTAAGAATCAGGTTGTCCACTTTAGAAACTGATCGGATTTATACACATTACTATCCCCTGTTGGTTTTGACGCCCTCTGGTTTGAAAAAGCATGGAGAACTTCAGTTGGCATTGAGGTTCAGTTCTACAGCTTGGGTCAATATGGTTGCTCAATATGGAAGACCATTGCTTCCAAAAATGCATTATATCAATCCTATACCTGTTAGGTATGTTGATTGGCTTCGCCACCAGGCAATGCAGATTGTGGCTGCACGACTATCTCGAGCAGAGCCACCACTGAGGCGGGAGGCTGTTGAGTACATGCTAGATGTAGATTACCATATGTTTAGTCTGAGGAGAAGCAAAGCCAACTTCCACCGTATCATGTCAGTTCTCAGCGGAGTCACCATGGTCTGCAGATGGTTCAATGACTTTTGCACCTGGAGAAACCCCGCCATGACGTGCGTGGTGCATATTTTGTTCGTGATTCTAGTTTGCTACCCAGAGCTGATCCTGCCAACAATCTTCCTCTACCTCTTTGTGATTGGTTTATGGAACTATAGGTTCAGGCCAAGGCACCCACCTCACATGGATGCTCGGATTTCACAGGCAGAGTTTGCACACCCGGATGAATTGGACGAGGAATTCGACAGCTTCCCCACAAGTCGACACTCGGACATTGTGAGAATGAGGTATGACAGGTTGCGTAGCGTGGCGGGTAGAGTGCAAACTGTGGTTGGAGATTTGGCAACCCAGGGGGAAAGAGCTCAAGCACTACTAAGCTGGAGGGATTCAAGGGCTACAGCAATCTTCATCATCTTCTCATTGATCTGGGCAGTTTTCATATACATTACTCCCTTCCAGGTTGTGGCAGTGCTGGTTGGGCTCTATATGCTACGGCATCCACGATTCCGAAGCAAGATGCCTTCTGCACCTGTTAATTTCTTTAAGAGATTGCCATCAAAGTCGGATATGATGCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005783 GO:0005829 GO:0007154 GO:0007165 GO:0008150 GO:0009987 GO:0012505 GO:0016020 GO:0016021 GO:0019722 GO:0019932 GO:0023052 GO:0031224 GO:0031974 GO:0031981 GO:0035556 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

C2 PRT_C

Protein Analysis

1017

Amino Acids

116.38

Weight (kDa)

9.05

Isoelectric Point (pI)

44.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
C2	PF00168	3 - 106	4.7e-21	C2 domain
C2	PF00168	283 - 387	6.5e-22	C2 domain
C2	PF00168	444 - 550	2.4e-16	C2 domain
C2	PF00168	609 - 717	6.1e-22	C2 domain
PRT_C	PF08372	862 - 1017	8.4e-80	Plant phosphoribosyltransferase C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0015110)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22610
fragaria_vesca	FvH4_5g32020
malus_domestica	MD08G1219200.v1.1 MD15G1407800.v1.1
prunus_persica	Prupe.1G553800_v2.0.a1
pyrus_communis	pycom08g19020 pycom15g36390
rosa_chinensis	RchiOBHm_Chr7g0228021
rosa_laevigata	RLG00000001595
rosa_multiflora	Rmu_sc0004858.1_g000016
rosa_rugosa	Rorug07G0245300
rosa_samantha	Rh7AG399300 Rh7BG380700 Rh7CG417200 Rh7DG394800
rosa_wichuraiana	Rw7G033170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1661
Acc36I	ACCTGC	1 cut(s)	1661
AccB1I	GGYRCC	1 cut(s)	2646
AccB7I	CCANNNNNTGG	1 cut(s)	2938
AccI	GTMKAC	6 cut(s)	87, 216, 797, 1766, 1985, 2737
AccIII	TCCGGA	1 cut(s)	1390
AclWI	GGATC	3 cut(s)	905, 1997, 2575
AcoI	YGGCCR	2 cut(s)	256, 1911
AcsI	RAATTY	4 cut(s)	1027, 1827, 1858, 2714
AcuI	CTGAAG	2 cut(s)	1772, 2177
AcyI	GRCGYC	3 cut(s)	30, 276, 2162
AdeI	CACNNNGTG	1 cut(s)	160
AfaI	GTAC	5 cut(s)	1154, 1456, 1646, 2011, 2390
AfeI	AGCGCT	1 cut(s)	403
AgsI	TTSAA	8 cut(s)	647, 1066, 1343, 1352, 1665, 2176, 2497, 2865
AjiI	CACGTC	1 cut(s)	2532
AjnI	CCWGG	7 cut(s)	156, 787, 1552, 2319, 2510, 2823, 2931
AjuI	GAANNNNNNNTTGG	2 cut(s)	915, 947
AleI	CACNNNNGTG	1 cut(s)	1400
Alw21I	GWGCWC	4 cut(s)	156, 1390, 1485, 2839
Alw26I	GTCTC	6 cut(s)	177, 283, 743, 1438, 1590, 1733
AlwI	GGATC	3 cut(s)	905, 1997, 2575
Ama87I	CYCGRG	3 cut(s)	666, 2068, 2352
Aor13HI	TCCGGA	1 cut(s)	1390
Aor51HI	AGCGCT	1 cut(s)	403
AoxI	GGCC	6 cut(s)	235, 256, 768, 1439, 1911, 2639
ApeKI	GCWGC	9 cut(s)	313, 557, 560, 563, 566, 569, 689, 1018, 2339
ApoI	RAATTY	4 cut(s)	1027, 1827, 1858, 2714
ArsI	GACNNNNNNTTYG	5 cut(s)	32, 198, 230, 2699, 2731
AspLEI	GCGC	1 cut(s)	404
AsuC2I	CCSGG	9 cut(s)	260, 604, 667, 668, 678, 684, 731, 980, 2696
AsuHPI	GGTGA	8 cut(s)	163, 371, 877, 1308, 1550, 1685, 2011, 2467
AsuII	TTCGAA	2 cut(s)	373, 1936
AsuNHI	GCTAGC	1 cut(s)	1289
AvaI	CYCGRG	3 cut(s)	666, 2068, 2352
AvaII	GGWCC	9 cut(s)	117, 262, 674, 680, 713, 1360, 1550, 1615, 2074
AxyI	CCTNAGG	1 cut(s)	1808
BalI	TGGCCA	1 cut(s)	1913
BanI	GGYRCC	1 cut(s)	2646
BanII	GRGCYC	4 cut(s)	1390, 1485, 2839, 2958
BauI	CACGAG	1 cut(s)	952
BbsI	GAAGAC	2 cut(s)	2070, 2257
Bbv12I	GWGCWC	4 cut(s)	156, 1390, 1485, 2839
BbvCI	CCTCAGC	1 cut(s)	408
BbvI	GCAGC	9 cut(s)	325, 544, 547, 550, 553, 556, 676, 1005, 2326
BccI	CCATC	6 cut(s)	209, 451, 597, 1626, 2484, 3037
BceAI	ACGGC	3 cut(s)	70, 76, 2984
BciT130I	CCWGG	7 cut(s)	158, 789, 1554, 2321, 2512, 2825, 2933
BclI	TGATCA	2 cut(s)	3, 1072
BcnI	CCSGG	9 cut(s)	260, 604, 667, 668, 678, 684, 731, 980, 2696
BcoDI	GTCTC	6 cut(s)	177, 283, 743, 1438, 1590, 1733
BfaI	CTAG	5 cut(s)	873, 1290, 1941, 2396, 2561
BfmI	CTRYAG	5 cut(s)	1019, 2217, 2485, 2629, 2871
BfoI	RGCGCY	1 cut(s)	405
BfuAI	ACCTGC	1 cut(s)	1661
BglII	AGATCT	1 cut(s)	877
Bme18I	GGWCC	9 cut(s)	117, 262, 674, 680, 713, 1360, 1550, 1615, 2074
BmeT110I	CYCGRG	3 cut(s)	666, 2068, 2352
BmgBI	CACGTC	1 cut(s)	2532
BmiI	GGNNCC	7 cut(s)	263, 675, 681, 714, 989, 2075, 2648
BmrI	ACTGGG	1 cut(s)	1106
BmtI	GCTAGC	1 cut(s)	1293
BmuI	ACTGGG	1 cut(s)	1106
BpiI	GAAGAC	2 cut(s)	2070, 2257
BpmI	CTGGAG	4 cut(s)	799, 1637, 2533, 2875
Bpu10I	CCTNAGC	3 cut(s)	408, 1356, 1632
Bpu14I	TTCGAA	2 cut(s)	373, 1936
BpuEI	CTTGAG	3 cut(s)	1206, 1420, 2823
BpuMI	CCSGG	9 cut(s)	260, 604, 667, 668, 678, 684, 731, 980, 2696
BsaBI	GATNNNNATC	1 cut(s)	3028
BsaHI	GRCGYC	3 cut(s)	30, 276, 2162
BsaI	GGTCTC	4 cut(s)	177, 743, 1438, 1590
BsaWI	WCCGGW	3 cut(s)	777, 1390, 1588
BsaXI	ACNNNNNCTCC	2 cut(s)	725, 755
Bse118I	RCCGGY	1 cut(s)	32
Bse1I	ACTGG	6 cut(s)	69, 753, 768, 904, 1112, 1617
Bse21I	CCTNAGG	1 cut(s)	1808
Bse3DI	GCAATG	2 cut(s)	2255, 2331
Bse8I	GATNNNNATC	1 cut(s)	3028
BseAI	TCCGGA	1 cut(s)	1390
BseBI	CCWGG	7 cut(s)	158, 789, 1554, 2321, 2512, 2825, 2933
BseJI	GATNNNNATC	1 cut(s)	3028
BseMI	GCAATG	2 cut(s)	2255, 2331
BseNI	ACTGG	6 cut(s)	69, 753, 768, 904, 1112, 1617
BseRI	GAGGAG	3 cut(s)	396, 1134, 2440
BseXI	GCAGC	9 cut(s)	325, 544, 547, 550, 553, 556, 676, 1005, 2326
BsgI	GTGCAG	3 cut(s)	332, 2325, 2985
BshFI	GGCC	6 cut(s)	237, 258, 770, 1441, 1913, 2641
BshNI	GGYRCC	1 cut(s)	2646
BsiHKAI	GWGCWC	4 cut(s)	156, 1390, 1485, 2839
BsiHKCI	CYCGRG	3 cut(s)	666, 2068, 2352
BslFI	GGGAC	7 cut(s)	57, 269, 726, 1094, 1231, 1352, 2087
BsmAI	GTCTC	6 cut(s)	177, 283, 743, 1438, 1590, 1733
BsmBI	CGTCTC	2 cut(s)	283, 1733
BsmFI	GGGAC	7 cut(s)	57, 269, 726, 1094, 1231, 1352, 2087
BsmI	GAATGC	1 cut(s)	1252
BsnI	GGCC	6 cut(s)	237, 258, 770, 1441, 1913, 2641
Bso31I	GGTCTC	4 cut(s)	177, 743, 1438, 1590
BsoBI	CYCGRG	3 cut(s)	666, 2068, 2352
Bsp119I	TTCGAA	2 cut(s)	373, 1936
Bsp1286I	GDGCHC	5 cut(s)	156, 1390, 1485, 2839, 2958
Bsp13I	TCCGGA	1 cut(s)	1390
Bsp19I	CCATGG	3 cut(s)	888, 1276, 2478
BspANI	GGCC	6 cut(s)	237, 258, 770, 1441, 1913, 2641
BspEI	TCCGGA	1 cut(s)	1390
BspHI	TCATGA	1 cut(s)	25
BspLI	GGNNCC	7 cut(s)	263, 675, 681, 714, 989, 2075, 2648
BspMAI	CTGCAG	2 cut(s)	1023, 2489
BspMI	ACCTGC	1 cut(s)	1661
BspOI	GCTAGC	1 cut(s)	1293
BspPI	GGATC	3 cut(s)	905, 1997, 2575
BspQI	GCTCTTC	1 cut(s)	375
BspT104I	TTCGAA	2 cut(s)	373, 1936
BspT107I	GGYRCC	1 cut(s)	2646
BspTNI	GGTCTC	4 cut(s)	177, 743, 1438, 1590
BsrDI	GCAATG	2 cut(s)	2255, 2331
BsrFI	RCCGGY	1 cut(s)	32
BsrI	ACTGG	6 cut(s)	69, 753, 768, 904, 1112, 1617
BssAI	RCCGGY	1 cut(s)	32
BssNAI	GTATAC	2 cut(s)	798, 1986
BssNI	GRCGYC	3 cut(s)	30, 276, 2162
BssSI	CACGAG	1 cut(s)	952
BssT1I	CCWWGG	5 cut(s)	888, 1008, 1276, 2478, 2642
Bst1107I	GTATAC	2 cut(s)	798, 1986
Bst2BI	CACGAG	1 cut(s)	952
Bst2UI	CCWGG	7 cut(s)	158, 789, 1554, 2321, 2512, 2825, 2933
Bst4CI	ACNGT	8 cut(s)	310, 697, 1045, 1907, 2014, 2023, 2450, 2803
Bst6I	CTCTTC	1 cut(s)	375
BstACI	GRCGYC	3 cut(s)	30, 276, 2162
BstAPI	GCANNNNNTGC	1 cut(s)	2687
BstBI	TTCGAA	2 cut(s)	373, 1936
BstC8I	GCNNGC	5 cut(s)	34, 235, 772, 1203, 1291
BstDSI	CCRYGG	5 cut(s)	306, 693, 888, 1276, 2478
BstH2I	RGCGCY	1 cut(s)	405
BstHHI	GCGC	1 cut(s)	404
BstMAI	GTCTC	6 cut(s)	177, 283, 743, 1438, 1590, 1733
BstMWI	GCNNNNNNNGC	8 cut(s)	563, 566, 569, 1633, 2584, 2687, 2953, 2962
BstNI	CCWGG	7 cut(s)	158, 789, 1554, 2321, 2512, 2825, 2933
BstNSI	RCATGY	1 cut(s)	2395
BstSFI	CTRYAG	5 cut(s)	1019, 2217, 2485, 2629, 2871
BstV1I	GCAGC	9 cut(s)	325, 544, 547, 550, 553, 556, 676, 1005, 2326
BstV2I	GAAGAC	2 cut(s)	2070, 2257
BstX2I	RGATCY	1 cut(s)	877
BstXI	CCANNNNNNTGG	2 cut(s)	208, 2084
BstYI	RGATCY	1 cut(s)	877
BstZ17I	GTATAC	2 cut(s)	798, 1986
Bsu36I	CCTNAGG	1 cut(s)	1808
BsuRI	GGCC	6 cut(s)	237, 258, 770, 1441, 1913, 2641
BtgI	CCRYGG	5 cut(s)	306, 693, 888, 1276, 2478
BtgZI	GCGATG	1 cut(s)	349
BtrI	CACGTC	1 cut(s)	2532
BtsI	GCAGTG	2 cut(s)	1786, 2949
BtsIMutI	CAGTG	7 cut(s)	149, 761, 1154, 1786, 1855, 2366, 2949
BveI	ACCTGC	1 cut(s)	1661
Cac8I	GCNNGC	5 cut(s)	34, 235, 772, 1203, 1291
CciI	TCATGA	1 cut(s)	25
CfoI	GCGC	1 cut(s)	404
Cfr10I	RCCGGY	1 cut(s)	32
Cfr9I	CCCGGG	1 cut(s)	666
CseI	GACGC	3 cut(s)	38, 265, 2170
CsiI	ACCWGGT	1 cut(s)	156
Csp6I	GTAC	5 cut(s)	1153, 1455, 1645, 2010, 2389
CviQI	GTAC	5 cut(s)	1153, 1455, 1645, 2010, 2389
DraIII	CACNNNGTG	1 cut(s)	160
EaeI	YGGCCR	2 cut(s)	256, 1911
Eam1104I	CTCTTC	1 cut(s)	375
EarI	CTCTTC	1 cut(s)	375
EciI	GGCGGA	1 cut(s)	1113
Ecl136II	GAGCTC	3 cut(s)	1388, 1483, 2837
Eco130I	CCWWGG	5 cut(s)	888, 1008, 1276, 2478, 2642
Eco147I	AGGCCT	1 cut(s)	1441
Eco24I	GRGCYC	4 cut(s)	1390, 1485, 2839, 2958
Eco31I	GGTCTC	4 cut(s)	177, 743, 1438, 1590
Eco47I	GGWCC	9 cut(s)	117, 262, 674, 680, 713, 1360, 1550, 1615, 2074
Eco47III	AGCGCT	1 cut(s)	403
Eco53kI	GAGCTC	3 cut(s)	1388, 1483, 2837
Eco57I	CTGAAG	2 cut(s)	1772, 2177
Eco81I	CCTNAGG	1 cut(s)	1808
Eco88I	CYCGRG	3 cut(s)	666, 2068, 2352
EcoICRI	GAGCTC	3 cut(s)	1388, 1483, 2837
EcoO109I	RGGNCCY	2 cut(s)	713, 1360
EcoRI	GAATTC	2 cut(s)	1827, 2714
EcoRII	CCWGG	7 cut(s)	156, 787, 1552, 2319, 2510, 2823, 2931
EcoT14I	CCWWGG	5 cut(s)	888, 1008, 1276, 2478, 2642
EcoT22I	ATGCAT	2 cut(s)	846, 2274
EcoT38I	GRGCYC	4 cut(s)	1390, 1485, 2839, 2958
ErhI	CCWWGG	5 cut(s)	888, 1008, 1276, 2478, 2642
Esp3I	CGTCTC	2 cut(s)	283, 1733
FalI	AAGNNNNNCTT	4 cut(s)	915, 947, 1295, 1327
FaqI	GGGAC	7 cut(s)	57, 269, 726, 1094, 1231, 1352, 2087
FauI	CCCGC	6 cut(s)	664, 779, 785, 2367, 2530, 2779
FauNDI	CATATG	3 cut(s)	823, 1399, 2412
FbaI	TGATCA	2 cut(s)	3, 1072
FblI	GTMKAC	6 cut(s)	87, 216, 797, 1766, 1985, 2737
FriOI	GRGCYC	4 cut(s)	1390, 1485, 2839, 2958
FspBI	CTAG	5 cut(s)	873, 1290, 1941, 2396, 2561
GlaI	GCGC	1 cut(s)	403
GsuI	CTGGAG	4 cut(s)	799, 1637, 2533, 2875
HaeII	RGCGCY	1 cut(s)	405
HaeIII	GGCC	6 cut(s)	237, 258, 770, 1441, 1913, 2641
HgaI	GACGC	3 cut(s)	38, 265, 2170
HhaI	GCGC	1 cut(s)	404
Hin1I	GRCGYC	3 cut(s)	30, 276, 2162
Hin6I	GCGC	1 cut(s)	402
HinP1I	GCGC	1 cut(s)	402
HincII	GTYRAC	1 cut(s)	2738
HindII	GTYRAC	1 cut(s)	2738
HindIII	AAGCTT	2 cut(s)	929, 1625
HphI	GGTGA	8 cut(s)	163, 371, 877, 1308, 1550, 1685, 2011, 2467
Hpy99I	CGWCG	1 cut(s)	62
HpyCH4III	ACNGT	8 cut(s)	310, 697, 1045, 1907, 2014, 2023, 2450, 2803
HpyCH4IV	ACGT	2 cut(s)	168, 2531
HpyF10VI	GCNNNNNNNGC	8 cut(s)	563, 566, 569, 1633, 2584, 2687, 2953, 2962
HpySE526I	ACGT	2 cut(s)	168, 2531
Hsp92I	GRCGYC	3 cut(s)	30, 276, 2162
HspAI	GCGC	1 cut(s)	402
Kpn2I	TCCGGA	1 cut(s)	1390
KroI	GCCGGC	1 cut(s)	32
KroNI	GCCGGC	1 cut(s)	34
Ksp22I	TGATCA	2 cut(s)	3, 1072
LguI	GCTCTTC	1 cut(s)	375
LmnI	GCTCC	6 cut(s)	409, 472, 835, 1147, 1393, 1869
Lsp1109I	GCAGC	9 cut(s)	325, 544, 547, 550, 553, 556, 676, 1005, 2326
MabI	ACCWGGT	1 cut(s)	156
MaeI	CTAG	5 cut(s)	873, 1290, 1941, 2396, 2561
MaeII	ACGT	2 cut(s)	168, 2531
MaeIII	GTNAC	9 cut(s)	169, 317, 359, 895, 949, 1039, 1538, 1781, 2473
MflI	RGATCY	1 cut(s)	877
MhlI	GDGCHC	5 cut(s)	156, 1390, 1485, 2839, 2958
MlsI	TGGCCA	1 cut(s)	1913
MluCI	AATT	6 cut(s)	1027, 1827, 1858, 2702, 2714, 3010
MluNI	TGGCCA	1 cut(s)	1913
MlyI	GAGTC	7 cut(s)	305, 957, 1213, 1241, 1772, 2060, 2481
MmeI	TCCRAC	5 cut(s)	273, 372, 908, 2788, 3018
Mox20I	TGGCCA	1 cut(s)	1913
Mph1103I	ATGCAT	2 cut(s)	846, 2274
MreI	CGCCGGCG	1 cut(s)	32
MroI	TCCGGA	1 cut(s)	1390
MroNI	GCCGGC	1 cut(s)	32
MscI	TGGCCA	1 cut(s)	1913
MseI	TTAA	5 cut(s)	165, 1461, 1508, 3009, 3018
MslI	CAYNNNNRTG	9 cut(s)	206, 698, 893, 1257, 1400, 1532, 2049, 2661, 2697
Msp20I	TGGCCA	1 cut(s)	1913
MspA1I	CMGCKG	1 cut(s)	2469
Mva1269I	GAATGC	1 cut(s)	1252
MvaI	CCWGG	7 cut(s)	158, 789, 1554, 2321, 2512, 2825, 2933
MwoI	GCNNNNNNNGC	8 cut(s)	563, 566, 569, 1633, 2584, 2687, 2953, 2962
NaeI	GCCGGC	1 cut(s)	34
NciI	CCSGG	9 cut(s)	260, 604, 667, 668, 678, 684, 731, 980, 2696
NcoI	CCATGG	3 cut(s)	888, 1276, 2478
NdeI	CATATG	3 cut(s)	823, 1399, 2412
NgoMIV	GCCGGC	1 cut(s)	32
NheI	GCTAGC	1 cut(s)	1289
NlaIV	GGNNCC	7 cut(s)	263, 675, 681, 714, 989, 2075, 2648
NmuCI	GTSAC	7 cut(s)	169, 359, 895, 949, 1538, 1781, 2473
NsiI	ATGCAT	2 cut(s)	846, 2274
NspI	RCATGY	1 cut(s)	2395
NspV	TTCGAA	2 cut(s)	373, 1936
OliI	CACNNNNGTG	1 cut(s)	1400
PaeR7I	CTCGAG	2 cut(s)	2068, 2352
PagI	TCATGA	1 cut(s)	25
PaqCI	CACCTGC	1 cut(s)	1661
PasI	CCCWGGG	1 cut(s)	2824
PceI	AGGCCT	1 cut(s)	1441
PciSI	GCTCTTC	1 cut(s)	375
PcsI	WCGNNNNNNNCGW	3 cut(s)	2350, 2715, 2974
PctI	GAATGC	1 cut(s)	1252
PdiI	GCCGGC	1 cut(s)	34
PflFI	GACNNNGTC	1 cut(s)	1364
PflMI	CCANNNNNTGG	1 cut(s)	2938
PleI	GAGTC	7 cut(s)	304, 956, 1213, 1240, 1771, 2060, 2480
PpsI	GAGTC	7 cut(s)	304, 956, 1213, 1240, 1771, 2060, 2480
PpuMI	RGGWCCY	2 cut(s)	713, 1360
Psp124BI	GAGCTC	3 cut(s)	1390, 1485, 2839
Psp5II	RGGWCCY	2 cut(s)	713, 1360
Psp6I	CCWGG	7 cut(s)	156, 787, 1552, 2319, 2510, 2823, 2931
PspGI	CCWGG	7 cut(s)	156, 787, 1552, 2319, 2510, 2823, 2931
PspN4I	GGNNCC	7 cut(s)	263, 675, 681, 714, 989, 2075, 2648
PspPPI	RGGWCCY	2 cut(s)	713, 1360
PspXI	VCTCGAGB	1 cut(s)	2068
PstI	CTGCAG	2 cut(s)	1023, 2489
PsuI	RGATCY	1 cut(s)	877
PsyI	GACNNNGTC	1 cut(s)	1364
RsaI	GTAC	5 cut(s)	1154, 1456, 1646, 2011, 2390
RsaNI	GTAC	5 cut(s)	1153, 1455, 1645, 2010, 2389
RseI	CAYNNNNRTG	9 cut(s)	206, 698, 893, 1257, 1400, 1532, 2049, 2661, 2697
SacI	GAGCTC	3 cut(s)	1390, 1485, 2839
SalI	GTCGAC	1 cut(s)	2736
SapI	GCTCTTC	1 cut(s)	375
SaqAI	TTAA	5 cut(s)	165, 1461, 1508, 3009, 3018
SchI	GAGTC	7 cut(s)	305, 957, 1213, 1241, 1772, 2060, 2481
SduI	GDGCHC	5 cut(s)	156, 1390, 1485, 2839, 2958
SexAI	ACCWGGT	1 cut(s)	156
SfcI	CTRYAG	5 cut(s)	1019, 2217, 2485, 2629, 2871
Sfr274I	CTCGAG	2 cut(s)	2068, 2352
SfuI	TTCGAA	2 cut(s)	373, 1936
SgrAI	CRCCGGYG	1 cut(s)	32
SinI	GGWCC	9 cut(s)	117, 262, 674, 680, 713, 1360, 1550, 1615, 2074
SlaI	CTCGAG	2 cut(s)	2068, 2352
SmaI	CCCGGG	1 cut(s)	668
SmiMI	CAYNNNNRTG	9 cut(s)	206, 698, 893, 1257, 1400, 1532, 2049, 2661, 2697
SmlI	CTYRAG	5 cut(s)	1221, 1435, 2068, 2352, 2838
SmoI	CTYRAG	5 cut(s)	1221, 1435, 2068, 2352, 2838
SrfI	GCCCGGGC	1 cut(s)	668
Sse9I	AATT	6 cut(s)	1027, 1827, 1858, 2702, 2714, 3010
SseBI	AGGCCT	1 cut(s)	1441
SspMI	CTAG	5 cut(s)	873, 1290, 1941, 2396, 2561
SstI	GAGCTC	3 cut(s)	1390, 1485, 2839
StuI	AGGCCT	1 cut(s)	1441
StyI	CCWWGG	5 cut(s)	888, 1008, 1276, 2478, 2642
TaaI	ACNGT	8 cut(s)	310, 697, 1045, 1907, 2014, 2023, 2450, 2803
TaiI	ACGT	2 cut(s)	171, 2534
TasI	AATT	6 cut(s)	1027, 1827, 1858, 2702, 2714, 3010
TatI	WGTACW	2 cut(s)	2009, 2388
TauI	GCSGC	1 cut(s)	770
Tru1I	TTAA	5 cut(s)	165, 1461, 1508, 3009, 3018
Tru9I	TTAA	5 cut(s)	165, 1461, 1508, 3009, 3018
TscAI	CASTG	7 cut(s)	149, 768, 1154, 1786, 1855, 2373, 2949
TseFI	GTSAC	7 cut(s)	169, 359, 895, 949, 1538, 1781, 2473
TseI	GCWGC	9 cut(s)	313, 557, 560, 563, 566, 569, 689, 1018, 2339
Tsp45I	GTSAC	7 cut(s)	169, 359, 895, 949, 1538, 1781, 2473
TspGWI	ACGGA	4 cut(s)	130, 271, 671, 1715
TspMI	CCCGGG	1 cut(s)	666
TspRI	CASTG	7 cut(s)	149, 768, 1154, 1786, 1855, 2373, 2949
Tth111I	GACNNNGTC	1 cut(s)	1364
Van91I	CCANNNNNTGG	1 cut(s)	2938
VpaK11BI	GGWCC	9 cut(s)	117, 262, 674, 680, 713, 1360, 1550, 1615, 2074
XapI	RAATTY	4 cut(s)	1027, 1827, 1858, 2714
XceI	RCATGY	1 cut(s)	2395
XcmI	CCANNNNNNNNNTGG	3 cut(s)	76, 760, 2533
XhoI	CTCGAG	2 cut(s)	2068, 2352
XmaI	CCCGGG	1 cut(s)	666
XmiI	GTMKAC	6 cut(s)	87, 216, 797, 1766, 1985, 2737
XspI	CTAG	5 cut(s)	873, 1290, 1941, 2396, 2561
Zsp2I	ATGCAT	2 cut(s)	846, 2274

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.