Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0015110

Physical Location & Seq

Genomic Coordinates Forward (+)

54139623 .. 54143146

Gene Structure 3524 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG394800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3051 bp

ATGATCAAACTTATAGTCGAAGTTCATGACGCCGGCGACCTCATGCCCAAAGACGGCGACGGCTTCGCCAGTCCCTTTGTGGAAGTAGACTTCGACCAGCAGAAACAGAGGACACGGACCAAGCCCAAAGACCTCAACCCCCAGTGGAACGAGCACCTGGTGTTCAACGTCACCGACCCAAGAGACCTTCCCGACAAGACCATCGAAGTGGTTGTCTACAATGACAGAAAAGCAGGCCACCACAAGAACTTTCTTGGCCGGGTCCGAATCTCCGGCGTCTCCGTCCCTCTGTCGGAGTCAGAAGCCACGGTGCAGCGTTACCCACTTGACAAAAGGGGCTTGTTTTCCAACATCAAAGGTGACATCGCTCTTCGAATCTATGCGGTTCAGGATTCGGGTAGCGCTCCTCAGCCACAGCAACAGGAGTATGAAATCAATGGTAATACTCATAGGATGATGGATGAAGAAGCCGAGCATCATCACATGGCTGAGAAGATGATGAAGAAGAAGAAGAAGGAACAGGAAGTGAGAACTTTTCACTCTATCGGAACAGGAGGTGCTGCTGCTGCTTCTTTCTCTCATGCTCATCCACCTTCGTCCGGGTTTGGGTTTGAAACCCACCACCAAAAAGCACCCCAAGTTGAAACGAGGACGGATTTCGCCCGGGCGGGTCCGGGTCCGGGTGCTGCCACGGTTATGCAGATGCAGGGAACTCCGAGGCAGAACCCGGAGTATGCGTTGGTGGAGACCAGTCCACCACTGGCGGCCCGCCTGCGGTATAGACCTGGCGGGTATACAGGGGATAAGACCTCCAGCACATATGATTTGGTGGAGCAGATGCATTACTTGTATGTGAGTGTGGTGAAGGCTAGAGATCTTCCAACCATGGATGTGACTGGAAGCCTTGATCCTTATGTGGAAGTGAAGCTTGGGAACTACAAGGGAGTCACGAGGCACTTGGACAAGAATCAAAACCCGGTGTGGAACCAGATTTTCGCTTTCTCCAAGGAGAGGCTGCAGTCGAATTTGGTGGAAGTTACTGTGAAAGACAAGGATGTTTTGAAGGATGATCATGTGGGGAGAGTTTTATTTGATCTCACAGATGTCCCAGTTCGAGTTCCGCCGGATAGTCCTCTTGCTCCTCAGTGGTACAGATTGGAGGACAATCATGGGGTCAAGGTTAGAGGGGAGATCATGCTTGCTGTTTGGATTGGGACTCAAGCTGATGAGTCATTTTCTGATGCTTGGCATTCTGATGCACATGACATTAGCCATGGCAATCTTGCTAGCACAAGATCAAAGGTTTACTTCTCACCGAAACTATATTATCTTAGAGTTCAAGTTCTTGAAGCTCAGGACCTTGTCCCTTTGGACAGAAGCAGAGCTCCGGACACGTATGTGAAGATACAGCTTGGTAATCAGATGAGGGTCTCAAGGCCTTCCCAAGTTCGTACCATTAACCCAATTTGGAATGATGAGCTCATGTTGGTTGCATCTGAGCCATTAACCCAAGAAGTCTTAGTCATAGCGGTGGGTGACAAGATTGGACCTGGCAAGGATGACCTGTTAGGAATGGTGTATCTTCCGGTTAGAGACCTTCCACAAAGACTGGACCATCATAAGCTTCCTGAGCCTCGCTGGTACAATCTCCAGAAGCCTTCAATGGCAGGTGAACAGGAAAGTGAGAAAAAGAAAGAGAAGTTTTCGAGCAAGATTCATCTCCGTCTCTGTTTGGATGCAGGGTATCATGTTCTTGATGAGTCTACACATTTTAGCAGTGACCTTCAGCCTTCCTCCAAGCACCTGAGGAAAGCAAACATTGGAATTCTGGAACTTGGGATTCTCAGTGCCAAGAATTTGCTCCCTATGAAGGGTAGGGAGGGTAGGACTACTGATTCATACTGTGTGGCCAAGTATGGGAACAAATGGATTCGAACTAGAACACTTCTCAACACTCTGACCCCTCGCTGGAATGAGCAGTATACTTGGGAAGTGTATGATCCATGTACTGTCATCACCGTTGGTGTTTTCGACAATCATCATATCAATGGAAGCCATGAAGACTCGAGGGACCAGAGGATTGGGAAGGTAAGAATCAGGTTGTCCACTTTAGAAACTGATCGGATTTATACACATTACTATCCCCTGTTGGTTTTGACGCCCTCTGGTTTGAAAAAGCATGGTGAACTTCAGTTGGCATTGAGGTTCAGTTCTACAGCTTGGGTCAATATGGTAGCTCAATATGGAAGACCATTGCTTCCAAAAATGCATTATATCAATCCTATACCTGTTAGGTATGTTGATTGGCTTCGCCACCAGGCAATGCAGATTGTGGCTGCACGACTATCTCGAGCAGAGCCACCACTGAGGCGGGAGGCTGTTGAGTACATGCTAGATGTAGATTACCATATGTTTAGTCTGAGGAGAAGCAAAGCCAACTTCCACCGTATCATGTCAGTTCTCAGCGGAGTCACCATGGTCTGCAGATGGTTCAATGACATTTGCACCTGGAGAAACCCCATCACGACGTGCCTGGTGCATATTTTGTTCGTGATTCTAGTTTGCTACCCAGAGCTGATCCTGCCAACAATCTTCCTCTACCTCTTTGTGATTGGTTTATGGAACTATAGGTTCAGGCCAAGGCACCCACCTCACATGGATGCTCGGATTTCACAGGCAGAGTTTGCACACCCGGATGAATTGGATGAGGAATTCGACAGCTTCCCTACAAGTCGACCCTCGGACATTGTGAGAATGAGGTATGACAGGTTGCGTAGCGTGGCGGGTAGAGTGCAAACTGTGGTTGGAGATTTGGCAACCCAGGGGGAAAGAGCTCAAGCACTACTAAGCTGGAGGGATTCAAGGGCAACAGCAATCTTCATCATCTTCTCGTTGATCTGGGCAGTTTTCATATACATTACTCCCTTCCAGGTTGTGGCAGTGGTGGTTGGGCTCTATATGCTACGGCATCCACGATTCCGACACAAGATGCCTTCTGCACCTGTTAATTTCTTTAAGAGATTGCCATCAAAGTCGGATATGATGCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005783 GO:0005829 GO:0007154 GO:0007165 GO:0008150 GO:0009987 GO:0012505 GO:0016020 GO:0016021 GO:0019722 GO:0019932 GO:0023052 GO:0031224 GO:0031974 GO:0031981 GO:0035556 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

C2 PRT_C

Protein Analysis

1016

Amino Acids

116.38

Weight (kDa)

9.01

Isoelectric Point (pI)

44.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
C2	PF00168	3 - 106	6.7e-21	C2 domain
C2	PF00168	282 - 386	6.5e-22	C2 domain
C2	PF00168	443 - 549	5e-17	C2 domain
C2	PF00168	608 - 716	5.4e-21	C2 domain
PRT_C	PF08372	861 - 1016	3.3e-80	Plant phosphoribosyltransferase C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0015110)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22610
fragaria_vesca	FvH4_5g32020
malus_domestica	MD08G1219200.v1.1 MD15G1407800.v1.1
prunus_persica	Prupe.1G553800_v2.0.a1
pyrus_communis	pycom08g19020 pycom15g36390
rosa_chinensis	RchiOBHm_Chr7g0228021
rosa_laevigata	RLG00000001595
rosa_multiflora	Rmu_sc0004858.1_g000016
rosa_rugosa	Rorug07G0245300
rosa_samantha	Rh7AG399300 Rh7BG380700 Rh7CG417200 Rh7DG394800
rosa_wichuraiana	Rw7G033170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1658
Acc36I	ACCTGC	1 cut(s)	1658
AccB1I	GGYRCC	1 cut(s)	2643
AccB7I	CCANNNNNTGG	1 cut(s)	2935
AccI	GTMKAC	6 cut(s)	87, 216, 794, 1763, 1982, 2734
AccIII	TCCGGA	1 cut(s)	1387
AclWI	GGATC	3 cut(s)	902, 1994, 2572
AcoI	YGGCCR	2 cut(s)	256, 1908
AcsI	RAATTY	4 cut(s)	1024, 1824, 1855, 2711
AcuI	CTGAAG	2 cut(s)	1769, 2174
AcyI	GRCGYC	3 cut(s)	30, 276, 2159
AdeI	CACNNNGTG	2 cut(s)	160, 2529
AfaI	GTAC	5 cut(s)	1151, 1453, 1643, 2008, 2387
AfeI	AGCGCT	1 cut(s)	403
AflIII	ACRYGT	1 cut(s)	1392
AjiI	CACGTC	1 cut(s)	2529
AjnI	CCWGG	8 cut(s)	156, 784, 1549, 2316, 2507, 2532, 2820, 2928
AjuI	GAANNNNNNNTTGG	2 cut(s)	912, 944
AleI	CACNNNNGTG	1 cut(s)	1397
Alw21I	GWGCWC	4 cut(s)	156, 1387, 1482, 2836
Alw26I	GTCTC	6 cut(s)	177, 283, 740, 1435, 1587, 1730
AlwI	GGATC	3 cut(s)	902, 1994, 2572
Ama87I	CYCGRG	3 cut(s)	663, 2065, 2349
Aor13HI	TCCGGA	1 cut(s)	1387
Aor51HI	AGCGCT	1 cut(s)	403
AoxI	GGCC	6 cut(s)	235, 256, 765, 1436, 1908, 2636
ApeKI	GCWGC	7 cut(s)	313, 560, 563, 566, 686, 1015, 2336
ApoI	RAATTY	4 cut(s)	1024, 1824, 1855, 2711
ArsI	GACNNNNNNTTYG	3 cut(s)	32, 198, 230
AspLEI	GCGC	1 cut(s)	404
AspS9I	GGNCC	9 cut(s)	117, 262, 671, 677, 766, 1357, 1547, 1612, 2071
AsuC2I	CCSGG	9 cut(s)	260, 601, 664, 665, 675, 681, 728, 977, 2693
AsuHPI	GGTGA	9 cut(s)	163, 371, 874, 1305, 1547, 1682, 2008, 2195, 2464
AsuII	TTCGAA	2 cut(s)	373, 1933
AsuNHI	GCTAGC	1 cut(s)	1286
AvaI	CYCGRG	3 cut(s)	663, 2065, 2349
AvaII	GGWCC	8 cut(s)	117, 262, 671, 677, 1357, 1547, 1612, 2071
AxyI	CCTNAGG	1 cut(s)	1805
BalI	TGGCCA	1 cut(s)	1910
BanI	GGYRCC	1 cut(s)	2643
BanII	GRGCYC	4 cut(s)	1387, 1482, 2836, 2955
BauI	CACGAG	1 cut(s)	949
BbsI	GAAGAC	2 cut(s)	2067, 2254
Bbv12I	GWGCWC	4 cut(s)	156, 1387, 1482, 2836
BbvCI	CCTCAGC	1 cut(s)	408
BbvI	GCAGC	7 cut(s)	325, 547, 550, 553, 673, 1002, 2323
BccI	CCATC	6 cut(s)	209, 451, 1623, 2481, 2528, 3034
BceAI	ACGGC	3 cut(s)	70, 76, 2981
BciT130I	CCWGG	8 cut(s)	158, 786, 1551, 2318, 2509, 2534, 2822, 2930
BclI	TGATCA	2 cut(s)	3, 1069
BcnI	CCSGG	9 cut(s)	260, 601, 664, 665, 675, 681, 728, 977, 2693
BcoDI	GTCTC	6 cut(s)	177, 283, 740, 1435, 1587, 1730
BfaI	CTAG	5 cut(s)	870, 1287, 1938, 2393, 2558
BfmI	CTRYAG	4 cut(s)	1016, 2214, 2482, 2626
BfoI	RGCGCY	1 cut(s)	405
BfuAI	ACCTGC	1 cut(s)	1658
BglII	AGATCT	1 cut(s)	874
BisI	GCNGC	8 cut(s)	314, 561, 564, 567, 687, 765, 1016, 2337
BlsI	GCNGC	8 cut(s)	315, 562, 565, 568, 688, 766, 1017, 2338
Bme18I	GGWCC	8 cut(s)	117, 262, 671, 677, 1357, 1547, 1612, 2071
BmeT110I	CYCGRG	3 cut(s)	663, 2065, 2349
BmgBI	CACGTC	1 cut(s)	2529
BmgT120I	GGNCC	9 cut(s)	117, 262, 671, 677, 766, 1357, 1547, 1612, 2071
BmiI	GGNNCC	6 cut(s)	263, 672, 678, 986, 2072, 2645
BmrI	ACTGGG	2 cut(s)	136, 1103
BmtI	GCTAGC	1 cut(s)	1290
BmuI	ACTGGG	2 cut(s)	136, 1103
BpiI	GAAGAC	2 cut(s)	2067, 2254
BpmI	CTGGAG	4 cut(s)	796, 1634, 2530, 2872
Bpu10I	CCTNAGC	3 cut(s)	408, 1353, 1629
Bpu14I	TTCGAA	2 cut(s)	373, 1933
BpuEI	CTTGAG	3 cut(s)	1203, 1417, 2820
BpuMI	CCSGG	9 cut(s)	260, 601, 664, 665, 675, 681, 728, 977, 2693
BsaAI	YACGTR	1 cut(s)	1395
BsaBI	GATNNNNATC	1 cut(s)	3025
BsaHI	GRCGYC	3 cut(s)	30, 276, 2159
BsaI	GGTCTC	4 cut(s)	177, 740, 1435, 1587
BsaWI	WCCGGW	2 cut(s)	1387, 1585
BsaXI	ACNNNNNCTCC	2 cut(s)	722, 752
Bse118I	RCCGGY	1 cut(s)	32
Bse1I	ACTGG	7 cut(s)	69, 142, 750, 765, 901, 1109, 1614
Bse21I	CCTNAGG	1 cut(s)	1805
Bse3DI	GCAATG	2 cut(s)	2252, 2328
Bse8I	GATNNNNATC	1 cut(s)	3025
BseAI	TCCGGA	1 cut(s)	1387
BseBI	CCWGG	8 cut(s)	158, 786, 1551, 2318, 2509, 2534, 2822, 2930
BseJI	GATNNNNATC	1 cut(s)	3025
BseMI	GCAATG	2 cut(s)	2252, 2328
BseNI	ACTGG	7 cut(s)	69, 142, 750, 765, 901, 1109, 1614
BseRI	GAGGAG	3 cut(s)	396, 1131, 2437
BseXI	GCAGC	7 cut(s)	325, 547, 550, 553, 673, 1002, 2323
BsgI	GTGCAG	3 cut(s)	332, 2322, 2982
BshFI	GGCC	6 cut(s)	237, 258, 767, 1438, 1910, 2638
BshNI	GGYRCC	1 cut(s)	2643
BsiHKAI	GWGCWC	4 cut(s)	156, 1387, 1482, 2836
BsiHKCI	CYCGRG	3 cut(s)	663, 2065, 2349
BslFI	GGGAC	6 cut(s)	57, 269, 1091, 1228, 1349, 2084
BsmAI	GTCTC	6 cut(s)	177, 283, 740, 1435, 1587, 1730
BsmBI	CGTCTC	2 cut(s)	283, 1730
BsmFI	GGGAC	6 cut(s)	57, 269, 1091, 1228, 1349, 2084
BsmI	GAATGC	1 cut(s)	1249
BsnI	GGCC	6 cut(s)	237, 258, 767, 1438, 1910, 2638
Bso31I	GGTCTC	4 cut(s)	177, 740, 1435, 1587
BsoBI	CYCGRG	3 cut(s)	663, 2065, 2349
Bsp119I	TTCGAA	2 cut(s)	373, 1933
Bsp1286I	GDGCHC	5 cut(s)	156, 1387, 1482, 2836, 2955
Bsp13I	TCCGGA	1 cut(s)	1387
Bsp19I	CCATGG	3 cut(s)	885, 1273, 2475
BspANI	GGCC	6 cut(s)	237, 258, 767, 1438, 1910, 2638
BspEI	TCCGGA	1 cut(s)	1387
BspHI	TCATGA	1 cut(s)	25
BspLI	GGNNCC	6 cut(s)	263, 672, 678, 986, 2072, 2645
BspMAI	CTGCAG	2 cut(s)	1020, 2486
BspMI	ACCTGC	1 cut(s)	1658
BspOI	GCTAGC	1 cut(s)	1290
BspPI	GGATC	3 cut(s)	902, 1994, 2572
BspQI	GCTCTTC	1 cut(s)	375
BspT104I	TTCGAA	2 cut(s)	373, 1933
BspT107I	GGYRCC	1 cut(s)	2643
BspTNI	GGTCTC	4 cut(s)	177, 740, 1435, 1587
BsrDI	GCAATG	2 cut(s)	2252, 2328
BsrFI	RCCGGY	1 cut(s)	32
BsrI	ACTGG	7 cut(s)	69, 142, 750, 765, 901, 1109, 1614
BssAI	RCCGGY	1 cut(s)	32
BssNAI	GTATAC	2 cut(s)	795, 1983
BssNI	GRCGYC	3 cut(s)	30, 276, 2159
BssSI	CACGAG	1 cut(s)	949
BssT1I	CCWWGG	5 cut(s)	885, 1005, 1273, 2475, 2639
Bst1107I	GTATAC	2 cut(s)	795, 1983
Bst2BI	CACGAG	1 cut(s)	949
Bst2UI	CCWGG	8 cut(s)	158, 786, 1551, 2318, 2509, 2534, 2822, 2930
Bst4CI	ACNGT	8 cut(s)	310, 694, 1042, 1904, 2011, 2020, 2447, 2800
Bst6I	CTCTTC	1 cut(s)	375
BstACI	GRCGYC	3 cut(s)	30, 276, 2159
BstAPI	GCANNNNNTGC	1 cut(s)	2684
BstBAI	YACGTR	1 cut(s)	1395
BstBI	TTCGAA	2 cut(s)	373, 1933
BstC8I	GCNNGC	6 cut(s)	34, 235, 769, 773, 1200, 1288
BstDSI	CCRYGG	5 cut(s)	306, 690, 885, 1273, 2475
BstH2I	RGCGCY	1 cut(s)	405
BstHHI	GCGC	1 cut(s)	404
BstMAI	GTCTC	6 cut(s)	177, 283, 740, 1435, 1587, 1730
BstMWI	GCNNNNNNNGC	5 cut(s)	566, 1630, 2581, 2684, 2959
BstNI	CCWGG	8 cut(s)	158, 786, 1551, 2318, 2509, 2534, 2822, 2930
BstNSI	RCATGY	1 cut(s)	2392
BstSFI	CTRYAG	4 cut(s)	1016, 2214, 2482, 2626
BstV1I	GCAGC	7 cut(s)	325, 547, 550, 553, 673, 1002, 2323
BstV2I	GAAGAC	2 cut(s)	2067, 2254
BstX2I	RGATCY	1 cut(s)	874
BstXI	CCANNNNNNTGG	2 cut(s)	208, 2081
BstYI	RGATCY	1 cut(s)	874
BstZ17I	GTATAC	2 cut(s)	795, 1983
Bsu36I	CCTNAGG	1 cut(s)	1805
BsuRI	GGCC	6 cut(s)	237, 258, 767, 1438, 1910, 2638
BtgI	CCRYGG	5 cut(s)	306, 690, 885, 1273, 2475
BtgZI	GCGATG	1 cut(s)	349
BtrI	CACGTC	1 cut(s)	2529
BtsI	GCAGTG	2 cut(s)	1783, 2946
BtsIMutI	CAGTG	7 cut(s)	149, 758, 1151, 1783, 1852, 2363, 2946
BveI	ACCTGC	1 cut(s)	1658
Cac8I	GCNNGC	6 cut(s)	34, 235, 769, 773, 1200, 1288
CciI	TCATGA	1 cut(s)	25
CfoI	GCGC	1 cut(s)	404
Cfr10I	RCCGGY	1 cut(s)	32
Cfr13I	GGNCC	9 cut(s)	117, 262, 671, 677, 766, 1357, 1547, 1612, 2071
Cfr9I	CCCGGG	1 cut(s)	663
CseI	GACGC	3 cut(s)	38, 265, 2167
CsiI	ACCWGGT	1 cut(s)	156
Csp6I	GTAC	5 cut(s)	1150, 1452, 1642, 2007, 2386
CviQI	GTAC	5 cut(s)	1150, 1452, 1642, 2007, 2386
DraIII	CACNNNGTG	2 cut(s)	160, 2529
EaeI	YGGCCR	2 cut(s)	256, 1908
Eam1104I	CTCTTC	1 cut(s)	375
EarI	CTCTTC	1 cut(s)	375
EciI	GGCGGA	1 cut(s)	1110
Ecl136II	GAGCTC	3 cut(s)	1385, 1480, 2834
Eco130I	CCWWGG	5 cut(s)	885, 1005, 1273, 2475, 2639
Eco147I	AGGCCT	1 cut(s)	1438
Eco24I	GRGCYC	4 cut(s)	1387, 1482, 2836, 2955
Eco31I	GGTCTC	4 cut(s)	177, 740, 1435, 1587
Eco47I	GGWCC	8 cut(s)	117, 262, 671, 677, 1357, 1547, 1612, 2071
Eco47III	AGCGCT	1 cut(s)	403
Eco53kI	GAGCTC	3 cut(s)	1385, 1480, 2834
Eco57I	CTGAAG	2 cut(s)	1769, 2174
Eco81I	CCTNAGG	1 cut(s)	1805
Eco88I	CYCGRG	3 cut(s)	663, 2065, 2349
EcoICRI	GAGCTC	3 cut(s)	1385, 1480, 2834
EcoO109I	RGGNCCY	1 cut(s)	1357
EcoRI	GAATTC	2 cut(s)	1824, 2711
EcoRII	CCWGG	8 cut(s)	156, 784, 1549, 2316, 2507, 2532, 2820, 2928
EcoT14I	CCWWGG	5 cut(s)	885, 1005, 1273, 2475, 2639
EcoT22I	ATGCAT	2 cut(s)	843, 2271
EcoT38I	GRGCYC	4 cut(s)	1387, 1482, 2836, 2955
ErhI	CCWWGG	5 cut(s)	885, 1005, 1273, 2475, 2639
Esp3I	CGTCTC	2 cut(s)	283, 1730
FalI	AAGNNNNNCTT	4 cut(s)	912, 944, 1292, 1324
FaqI	GGGAC	6 cut(s)	57, 269, 1091, 1228, 1349, 2084
FauI	CCCGC	5 cut(s)	661, 776, 782, 2364, 2776
FauNDI	CATATG	2 cut(s)	820, 2409
FbaI	TGATCA	2 cut(s)	3, 1069
FblI	GTMKAC	6 cut(s)	87, 216, 794, 1763, 1982, 2734
Fnu4HI	GCNGC	8 cut(s)	314, 561, 564, 567, 687, 765, 1016, 2337
FriOI	GRGCYC	4 cut(s)	1387, 1482, 2836, 2955
Fsp4HI	GCNGC	8 cut(s)	314, 561, 564, 567, 687, 765, 1016, 2337
FspBI	CTAG	5 cut(s)	870, 1287, 1938, 2393, 2558
GlaI	GCGC	1 cut(s)	403
GluI	GCNGC	8 cut(s)	314, 561, 564, 567, 687, 765, 1016, 2337
GsuI	CTGGAG	4 cut(s)	796, 1634, 2530, 2872
HaeII	RGCGCY	1 cut(s)	405
HaeIII	GGCC	6 cut(s)	237, 258, 767, 1438, 1910, 2638
HgaI	GACGC	3 cut(s)	38, 265, 2167
HhaI	GCGC	1 cut(s)	404
Hin1I	GRCGYC	3 cut(s)	30, 276, 2159
Hin6I	GCGC	1 cut(s)	402
HinP1I	GCGC	1 cut(s)	402
HincII	GTYRAC	1 cut(s)	2735
HindII	GTYRAC	1 cut(s)	2735
HindIII	AAGCTT	2 cut(s)	926, 1622
HphI	GGTGA	9 cut(s)	163, 371, 874, 1305, 1547, 1682, 2008, 2195, 2464
Hpy99I	CGWCG	2 cut(s)	62, 2530
HpyCH4III	ACNGT	8 cut(s)	310, 694, 1042, 1904, 2011, 2020, 2447, 2800
HpyCH4IV	ACGT	3 cut(s)	168, 1394, 2528
HpyF10VI	GCNNNNNNNGC	5 cut(s)	566, 1630, 2581, 2684, 2959
HpySE526I	ACGT	3 cut(s)	168, 1394, 2528
Hsp92I	GRCGYC	3 cut(s)	30, 276, 2159
HspAI	GCGC	1 cut(s)	402
Kpn2I	TCCGGA	1 cut(s)	1387
KroI	GCCGGC	1 cut(s)	32
KroNI	GCCGGC	1 cut(s)	34
Ksp22I	TGATCA	2 cut(s)	3, 1069
LguI	GCTCTTC	1 cut(s)	375
LmnI	GCTCC	5 cut(s)	409, 832, 1144, 1390, 1866
Lsp1109I	GCAGC	7 cut(s)	325, 547, 550, 553, 673, 1002, 2323
MabI	ACCWGGT	1 cut(s)	156
MaeI	CTAG	5 cut(s)	870, 1287, 1938, 2393, 2558
MaeII	ACGT	3 cut(s)	168, 1394, 2528
MaeIII	GTNAC	9 cut(s)	169, 317, 359, 892, 946, 1036, 1535, 1778, 2470
MflI	RGATCY	1 cut(s)	874
MhlI	GDGCHC	5 cut(s)	156, 1387, 1482, 2836, 2955
MlsI	TGGCCA	1 cut(s)	1910
MluCI	AATT	7 cut(s)	1024, 1464, 1824, 1855, 2699, 2711, 3007
MluNI	TGGCCA	1 cut(s)	1910
MlyI	GAGTC	7 cut(s)	305, 954, 1210, 1238, 1769, 2057, 2478
MmeI	TCCRAC	6 cut(s)	273, 372, 905, 2785, 3004, 3015
Mox20I	TGGCCA	1 cut(s)	1910
Mph1103I	ATGCAT	2 cut(s)	843, 2271
MreI	CGCCGGCG	1 cut(s)	32
MroI	TCCGGA	1 cut(s)	1387
MroNI	GCCGGC	1 cut(s)	32
MscI	TGGCCA	1 cut(s)	1910
MseI	TTAA	4 cut(s)	1458, 1505, 3006, 3015
MslI	CAYNNNNRTG	9 cut(s)	206, 695, 890, 1254, 1397, 1529, 2046, 2658, 2694
Msp20I	TGGCCA	1 cut(s)	1910
MspA1I	CMGCKG	1 cut(s)	2466
Mva1269I	GAATGC	1 cut(s)	1249
MvaI	CCWGG	8 cut(s)	158, 786, 1551, 2318, 2509, 2534, 2822, 2930
MwoI	GCNNNNNNNGC	5 cut(s)	566, 1630, 2581, 2684, 2959
NaeI	GCCGGC	1 cut(s)	34
NciI	CCSGG	9 cut(s)	260, 601, 664, 665, 675, 681, 728, 977, 2693
NcoI	CCATGG	3 cut(s)	885, 1273, 2475
NdeI	CATATG	2 cut(s)	820, 2409
NgoMIV	GCCGGC	1 cut(s)	32
NheI	GCTAGC	1 cut(s)	1286
NlaIV	GGNNCC	6 cut(s)	263, 672, 678, 986, 2072, 2645
NmeAIII	GCCGAG	1 cut(s)	496
NmuCI	GTSAC	7 cut(s)	169, 359, 892, 946, 1535, 1778, 2470
NsiI	ATGCAT	2 cut(s)	843, 2271
NspI	RCATGY	1 cut(s)	2392
NspV	TTCGAA	2 cut(s)	373, 1933
OliI	CACNNNNGTG	1 cut(s)	1397
PaeR7I	CTCGAG	2 cut(s)	2065, 2349
PagI	TCATGA	1 cut(s)	25
PaqCI	CACCTGC	1 cut(s)	1658
PasI	CCCWGGG	1 cut(s)	2821
PceI	AGGCCT	1 cut(s)	1438
PciSI	GCTCTTC	1 cut(s)	375
PcsI	WCGNNNNNNNCGW	2 cut(s)	2347, 2971
PctI	GAATGC	1 cut(s)	1249
PdiI	GCCGGC	1 cut(s)	34
PflFI	GACNNNGTC	1 cut(s)	1361
PflMI	CCANNNNNTGG	1 cut(s)	2935
PkrI	GCNGC	8 cut(s)	315, 562, 565, 568, 688, 766, 1017, 2338
PleI	GAGTC	7 cut(s)	304, 953, 1210, 1237, 1768, 2057, 2477
PpsI	GAGTC	7 cut(s)	304, 953, 1210, 1237, 1768, 2057, 2477
Ppu21I	YACGTR	1 cut(s)	1395
PpuMI	RGGWCCY	1 cut(s)	1357
Psp124BI	GAGCTC	3 cut(s)	1387, 1482, 2836
Psp5II	RGGWCCY	1 cut(s)	1357
Psp6I	CCWGG	8 cut(s)	156, 784, 1549, 2316, 2507, 2532, 2820, 2928
PspGI	CCWGG	8 cut(s)	156, 784, 1549, 2316, 2507, 2532, 2820, 2928
PspN4I	GGNNCC	6 cut(s)	263, 672, 678, 986, 2072, 2645
PspPI	GGNCC	9 cut(s)	117, 262, 671, 677, 766, 1357, 1547, 1612, 2071
PspPPI	RGGWCCY	1 cut(s)	1357
PspXI	VCTCGAGB	1 cut(s)	2065
PstI	CTGCAG	2 cut(s)	1020, 2486
PsuI	RGATCY	1 cut(s)	874
PsyI	GACNNNGTC	1 cut(s)	1361
RsaI	GTAC	5 cut(s)	1151, 1453, 1643, 2008, 2387
RsaNI	GTAC	5 cut(s)	1150, 1452, 1642, 2007, 2386
RseI	CAYNNNNRTG	9 cut(s)	206, 695, 890, 1254, 1397, 1529, 2046, 2658, 2694
SacI	GAGCTC	3 cut(s)	1387, 1482, 2836
SalI	GTCGAC	1 cut(s)	2733
SapI	GCTCTTC	1 cut(s)	375
SaqAI	TTAA	4 cut(s)	1458, 1505, 3006, 3015
SatI	GCNGC	8 cut(s)	314, 561, 564, 567, 687, 765, 1016, 2337
Sau96I	GGNCC	9 cut(s)	117, 262, 671, 677, 766, 1357, 1547, 1612, 2071
SchI	GAGTC	7 cut(s)	305, 954, 1210, 1238, 1769, 2057, 2478
SduI	GDGCHC	5 cut(s)	156, 1387, 1482, 2836, 2955
SexAI	ACCWGGT	1 cut(s)	156
SfcI	CTRYAG	4 cut(s)	1016, 2214, 2482, 2626
Sfr274I	CTCGAG	2 cut(s)	2065, 2349
SfuI	TTCGAA	2 cut(s)	373, 1933
SgrAI	CRCCGGYG	1 cut(s)	32
SinI	GGWCC	8 cut(s)	117, 262, 671, 677, 1357, 1547, 1612, 2071
SlaI	CTCGAG	2 cut(s)	2065, 2349
SmaI	CCCGGG	1 cut(s)	665
SmiMI	CAYNNNNRTG	9 cut(s)	206, 695, 890, 1254, 1397, 1529, 2046, 2658, 2694
SmlI	CTYRAG	5 cut(s)	1218, 1432, 2065, 2349, 2835
SmoI	CTYRAG	5 cut(s)	1218, 1432, 2065, 2349, 2835
SrfI	GCCCGGGC	1 cut(s)	665
Sse9I	AATT	7 cut(s)	1024, 1464, 1824, 1855, 2699, 2711, 3007
SseBI	AGGCCT	1 cut(s)	1438
SspMI	CTAG	5 cut(s)	870, 1287, 1938, 2393, 2558
SstI	GAGCTC	3 cut(s)	1387, 1482, 2836
StuI	AGGCCT	1 cut(s)	1438
StyI	CCWWGG	5 cut(s)	885, 1005, 1273, 2475, 2639
TaaI	ACNGT	8 cut(s)	310, 694, 1042, 1904, 2011, 2020, 2447, 2800
TaiI	ACGT	3 cut(s)	171, 1397, 2531
TasI	AATT	7 cut(s)	1024, 1464, 1824, 1855, 2699, 2711, 3007
TatI	WGTACW	2 cut(s)	2006, 2385
TauI	GCSGC	1 cut(s)	767
Tru1I	TTAA	4 cut(s)	1458, 1505, 3006, 3015
Tru9I	TTAA	4 cut(s)	1458, 1505, 3006, 3015
TscAI	CASTG	7 cut(s)	149, 765, 1151, 1783, 1852, 2370, 2946
TseFI	GTSAC	7 cut(s)	169, 359, 892, 946, 1535, 1778, 2470
TseI	GCWGC	7 cut(s)	313, 560, 563, 566, 686, 1015, 2336
Tsp45I	GTSAC	7 cut(s)	169, 359, 892, 946, 1535, 1778, 2470
TspGWI	ACGGA	4 cut(s)	130, 271, 668, 1712
TspMI	CCCGGG	1 cut(s)	663
TspRI	CASTG	7 cut(s)	149, 765, 1151, 1783, 1852, 2370, 2946
Tth111I	GACNNNGTC	1 cut(s)	1361
Van91I	CCANNNNNTGG	1 cut(s)	2935
VpaK11BI	GGWCC	8 cut(s)	117, 262, 671, 677, 1357, 1547, 1612, 2071
XapI	RAATTY	4 cut(s)	1024, 1824, 1855, 2711
XceI	RCATGY	1 cut(s)	2392
XcmI	CCANNNNNNNNNTGG	2 cut(s)	76, 757
XhoI	CTCGAG	2 cut(s)	2065, 2349
XmaI	CCCGGG	1 cut(s)	663
XmiI	GTMKAC	6 cut(s)	87, 216, 794, 1763, 1982, 2734
XspI	CTAG	5 cut(s)	870, 1287, 1938, 2393, 2558
Zsp2I	ATGCAT	2 cut(s)	843, 2271

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.