Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0005676

Physical Location & Seq

Genomic Coordinates Reverse (-)

22608749 .. 22610545

Gene Structure 1797 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG124300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGCGACTCTACCAGTGTTCACCAACTGTCCCAGTTAGAGCTTTAGGAATCTCAGTCGATAAGAAATCAGGGCACTCCATTCTATGTTCTTCCGGCCTCACTTTCCCATCATCAATAGGTCAACCTCAACAAACAGAACCACTTAAAACAGATCCATCAATCCCAGAAACCAATTTTCACAAATTCTGGGAGCCCAAAATGAGCCCATCAAAGAACACTAGGAAGCTGGAGGTGGTTTCACTAGTCCCAGCTGACATAGACATTGCCAATTCAGTTGAGCCTGTTCACATCTCTGAGATTGCCAAAGACCTTAATCTCAGTCCTGACCACTATGATCTCTATGGAAAATACAAGGCCAAGGTTTTGTTATCTGTAATTGATGAACTGAAAGGATCTAGTGATGGGTATTATGTTGTTGTGGGAGGGATTACTCCTACACCTCTTGGTCTACCACCACTGTTGGACTGTGTCAAGCTTTGGGTGCTTTTCAAGATAAGAAGGTTGTCACTTACCTTCGTCAACCATCACAAGGACCAACTTTTGGAATTAAAGGTGGTGCAGCAGGTGGTGGTTACAGTCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004329 GO:0004477 GO:0004488 GO:0005488 GO:0005507 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006082 GO:0006139 GO:0006144 GO:0006575 GO:0006725 GO:0006732 GO:0006760 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009112 GO:0009113 GO:0009256 GO:0009257 GO:0009396 GO:0009507 GO:0009536 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0016020 GO:0016053 GO:0016491 GO:0016645 GO:0016646 GO:0016787 GO:0016810 GO:0016814 GO:0016874 GO:0016879 GO:0018130 GO:0019238 GO:0019438 GO:0019752 GO:0034641 GO:0042221 GO:0042398 GO:0042440 GO:0042558 GO:0042559 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0043648 GO:0043650 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046112 GO:0046148 GO:0046394 GO:0046483 GO:0046653 GO:0046654 GO:0046686 GO:0046872 GO:0046914 GO:0048046 GO:0050896 GO:0051186 GO:0051188 GO:0055086 GO:0055114 GO:0071704 GO:0071944 GO:0072521 GO:0072522 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00670 ko00720 ko01100 ko01120 ko01200 map00670 map00720 map01100 map01120 map01200

Pfam Domains

Protein Families

FTHFS

Protein Analysis

194

Amino Acids

21.51

Weight (kDa)

8.68

Isoelectric Point (pI)

47.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FTHFS	PF01268	84 - 149	1.2e-14	Formate--tetrahydrofolate ligase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0005676)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50480
fragaria_vesca	FvH4_3g44470 FvH4_3g44470 FvH4_3g44470 FvH4_3g44470 FvH4_3g44470 FvH4_3g44470 FvH4_3g44470
malus_domestica	MD03G1012400.v1.1 MD11G1015100.v1.1
prunus_persica	Prupe.6G013000_v2.0.a1 Prupe.6G013000_v2.0.a1 Prupe.6G013000_v2.0.a1
pyrus_communis	pycom03g01100 pycom11g01040
rosa_chinensis	RchiOBHm_Chr5g0081161
rosa_laevigata	RLG00000036914
rosa_multiflora	Rmu_sc0016124.1_g000001 Rmu_ssc0000432.1_g000078
rosa_roxburghii	Rroxscaffold_1G00002300
rosa_rugosa	Rorug05G0473600
rosa_samantha	Rh1DG124300 Rh5AG526200 Rh5BG550500 Rh5CG573400 Rh5DG560200
rosa_wichuraiana	Rw1G009600 Rw5G048890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	553
Acc36I	ACCTGC	1 cut(s)	553
AccB7I	CCANNNNNTGG	1 cut(s)	541
AccI	GTMKAC	1 cut(s)	448
AclWI	GGATC	2 cut(s)	146, 400
AcsI	RAATTY	1 cut(s)	182
AfiI	CCNNNNNNNGG	2 cut(s)	529, 541
AgsI	TTSAA	1 cut(s)	490
AhlI	ACTAGT	1 cut(s)	241
AluBI	AGCT	4 cut(s)	41, 226, 251, 475
AluI	AGCT	4 cut(s)	41, 226, 251, 475
AlwI	GGATC	2 cut(s)	146, 400
AoxI	GGCC	2 cut(s)	94, 354
ApeKI	GCWGC	1 cut(s)	559
ApoI	RAATTY	1 cut(s)	182
AspS9I	GGNCC	1 cut(s)	532
AsuHPI	GGTGA	1 cut(s)	12
AvaII	GGWCC	1 cut(s)	532
BaeGI	GKGCMC	1 cut(s)	75
BanII	GRGCYC	2 cut(s)	195, 206
BbvI	GCAGC	1 cut(s)	571
BccI	CCATC	5 cut(s)	115, 163, 214, 395, 531
BcuI	ACTAGT	1 cut(s)	241
BfaI	CTAG	3 cut(s)	219, 242, 396
BfuAI	ACCTGC	1 cut(s)	553
BisI	GCNGC	1 cut(s)	560
BlsI	GCNGC	1 cut(s)	561
Bme18I	GGWCC	1 cut(s)	532
BmgT120I	GGNCC	1 cut(s)	532
BmiI	GGNNCC	1 cut(s)	192
BmrI	ACTGGG	1 cut(s)	26
BmuI	ACTGGG	1 cut(s)	26
BpmI	CTGGAG	1 cut(s)	248
BsaJI	CCNNGG	1 cut(s)	357
Bsc4I	CCNNNNNNNGG	2 cut(s)	529, 541
Bse1I	ACTGG	2 cut(s)	13, 32
Bse3DI	GCAATG	1 cut(s)	261
BseDI	CCNNGG	1 cut(s)	357
BseLI	CCNNNNNNNGG	2 cut(s)	529, 541
BseMI	GCAATG	1 cut(s)	261
BseMII	CTCAG	3 cut(s)	66, 285, 331
BseNI	ACTGG	2 cut(s)	13, 32
BseSI	GKGCMC	1 cut(s)	75
BseXI	GCAGC	1 cut(s)	571
BseYI	CCCAGC	1 cut(s)	247
BsgI	GTGCAG	1 cut(s)	578
BshFI	GGCC	2 cut(s)	96, 356
BsiSI	CCGG	1 cut(s)	93
BslFI	GGGAC	2 cut(s)	14, 230
BslI	CCNNNNNNNGG	2 cut(s)	529, 541
BsmFI	GGGAC	2 cut(s)	14, 230
BsnI	GGCC	2 cut(s)	96, 356
Bsp1286I	GDGCHC	3 cut(s)	75, 195, 206
Bsp143I	GATC	3 cut(s)	151, 334, 392
BspANI	GGCC	2 cut(s)	96, 356
BspCNI	CTCAG	3 cut(s)	65, 286, 330
BspLI	GGNNCC	1 cut(s)	192
BspMI	ACCTGC	1 cut(s)	553
BspPI	GGATC	2 cut(s)	146, 400
BsrDI	GCAATG	1 cut(s)	261
BsrI	ACTGG	2 cut(s)	13, 32
BssECI	CCNNGG	1 cut(s)	357
BssMI	GATC	3 cut(s)	151, 334, 392
BssT1I	CCWWGG	1 cut(s)	357
Bst4CI	ACNGT	4 cut(s)	28, 459, 467, 577
BstDEI	CTNAG	3 cut(s)	52, 294, 317
BstKTI	GATC	3 cut(s)	154, 337, 395
BstMBI	GATC	3 cut(s)	151, 334, 392
BstMWI	GCNNNNNNNGC	1 cut(s)	481
BstSLI	GKGCMC	1 cut(s)	75
BstV1I	GCAGC	1 cut(s)	571
BstX2I	RGATCY	2 cut(s)	151, 392
BstYI	RGATCY	2 cut(s)	151, 392
BsuRI	GGCC	2 cut(s)	96, 356
BtsIMutI	CAGTG	2 cut(s)	20, 455
BveI	ACCTGC	1 cut(s)	553
Cfr13I	GGNCC	1 cut(s)	532
CspCI	CAANNNNNGTGG	2 cut(s)	441, 476
CviJI	RGCY	9 cut(s)	41, 96, 193, 204, 226, 251, 280, 356, 475
CviKI_1	RGCY	9 cut(s)	41, 96, 193, 204, 226, 251, 280, 356, 475
DdeI	CTNAG	3 cut(s)	52, 294, 317
DpnI	GATC	3 cut(s)	153, 336, 394
DpnII	GATC	3 cut(s)	151, 334, 392
Eco130I	CCWWGG	1 cut(s)	357
Eco24I	GRGCYC	2 cut(s)	195, 206
Eco47I	GGWCC	1 cut(s)	532
EcoT14I	CCWWGG	1 cut(s)	357
EcoT38I	GRGCYC	2 cut(s)	195, 206
ErhI	CCWWGG	1 cut(s)	357
FaiI	YATR	5 cut(s)	85, 257, 333, 342, 411
FaqI	GGGAC	2 cut(s)	14, 230
FblI	GTMKAC	1 cut(s)	448
Fnu4HI	GCNGC	1 cut(s)	560
FriOI	GRGCYC	2 cut(s)	195, 206
Fsp4HI	GCNGC	1 cut(s)	560
FspBI	CTAG	3 cut(s)	219, 242, 396
GluI	GCNGC	1 cut(s)	560
GsaI	CCCAGC	1 cut(s)	251
GsuI	CTGGAG	1 cut(s)	248
HaeIII	GGCC	2 cut(s)	96, 356
HapII	CCGG	1 cut(s)	93
HincII	GTYRAC	2 cut(s)	122, 520
HindII	GTYRAC	2 cut(s)	122, 520
HindIII	AAGCTT	1 cut(s)	473
HinfI	GANTC	2 cut(s)	6, 48
HpaII	CCGG	1 cut(s)	93
HphI	GGTGA	1 cut(s)	12
Hpy166II	GTNNAC	5 cut(s)	20, 122, 286, 449, 520
Hpy188I	TCNGA	1 cut(s)	295
Hpy188III	TCNNGA	2 cut(s)	323, 490
Hpy8I	GTNNAC	5 cut(s)	20, 122, 286, 449, 520
HpyAV	CCTTC	2 cut(s)	492, 523
HpyCH4III	ACNGT	4 cut(s)	28, 459, 467, 577
HpyCH4V	TGCA	1 cut(s)	559
HpyF10VI	GCNNNNNNNGC	1 cut(s)	481
HpyF3I	CTNAG	3 cut(s)	52, 294, 317
Kzo9I	GATC	3 cut(s)	151, 334, 392
LmnI	GCTCC	1 cut(s)	190
Lsp1109I	GCAGC	1 cut(s)	571
MaeI	CTAG	3 cut(s)	219, 242, 396
MaeIII	GTNAC	2 cut(s)	504, 571
MalI	GATC	3 cut(s)	153, 336, 394
MboI	GATC	3 cut(s)	151, 334, 392
MboII	GAAGA	1 cut(s)	81
MflI	RGATCY	2 cut(s)	151, 392
MhlI	GDGCHC	3 cut(s)	75, 195, 206
MluCI	AATT	5 cut(s)	172, 182, 268, 375, 545
MmeI	TCCRAC	1 cut(s)	441
MnlI	CCTC	5 cut(s)	107, 135, 223, 416, 450
MseI	TTAA	3 cut(s)	144, 312, 548
MspA1I	CMGCKG	1 cut(s)	251
MspI	CCGG	1 cut(s)	93
MwoI	GCNNNNNNNGC	1 cut(s)	481
NdeII	GATC	3 cut(s)	151, 334, 392
NlaIV	GGNNCC	1 cut(s)	192
NmuCI	GTSAC	1 cut(s)	504
PaqCI	CACCTGC	1 cut(s)	553
PfeI	GAWTC	1 cut(s)	48
PflFI	GACNNNGTC	1 cut(s)	467
PflMI	CCANNNNNTGG	1 cut(s)	541
PkrI	GCNGC	1 cut(s)	561
PspFI	CCCAGC	1 cut(s)	247
PspN4I	GGNNCC	1 cut(s)	192
PspPI	GGNCC	1 cut(s)	532
PsuI	RGATCY	2 cut(s)	151, 392
PsyI	GACNNNGTC	1 cut(s)	467
PvuII	CAGCTG	1 cut(s)	251
SaqAI	TTAA	3 cut(s)	144, 312, 548
SatI	GCNGC	1 cut(s)	560
Sau3AI	GATC	3 cut(s)	151, 334, 392
Sau96I	GGNCC	1 cut(s)	532
SduI	GDGCHC	3 cut(s)	75, 195, 206
SinI	GGWCC	1 cut(s)	532
SpeI	ACTAGT	1 cut(s)	241
Sse9I	AATT	5 cut(s)	172, 182, 268, 375, 545
SspMI	CTAG	3 cut(s)	219, 242, 396
StyI	CCWWGG	1 cut(s)	357
TaaI	ACNGT	4 cut(s)	28, 459, 467, 577
TaqI	TCGA	1 cut(s)	57
TasI	AATT	5 cut(s)	172, 182, 268, 375, 545
TfiI	GAWTC	1 cut(s)	48
Tru1I	TTAA	3 cut(s)	144, 312, 548
Tru9I	TTAA	3 cut(s)	144, 312, 548
TscAI	CASTG	2 cut(s)	20, 462
TseFI	GTSAC	1 cut(s)	504
TseI	GCWGC	1 cut(s)	559
Tsp45I	GTSAC	1 cut(s)	504
TspDTI	ATGAA	1 cut(s)	396
TspRI	CASTG	2 cut(s)	20, 462
Tth111I	GACNNNGTC	1 cut(s)	467
Van91I	CCANNNNNTGG	1 cut(s)	541
VpaK11BI	GGWCC	1 cut(s)	532
XapI	RAATTY	1 cut(s)	182
XmiI	GTMKAC	1 cut(s)	448
XspI	CTAG	3 cut(s)	219, 242, 396

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.