Rorug05G0473600

Protein trichome birefringence-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0001307
Physical Location & Seq
Forward (+)
65096482 .. 65099907
3426 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0473600.1

Sequence Viewer

Length: 564 bp
ATGGCGAAGCGGGAGCTTTCCAGCACTCTGAGGAACTTAAAGTTCATGCAAAGGGCAACTCAGAGAGAGGAGATGGTGAAGAAAGAAGAAGAAGAAGAAGAAGTCAAACCTGATGGGGGTTTTAGCTCTGCTGCTACCCAACTAAGAAAGTGTGTGGTCGTAATGGAAGGTGACCCCAGTCCGGGAGCAATTAAAGGGCGAATTTCATTTAACGGTTTCAATCCATTAATTGATAAACTGAATAACCCTGGTCAGCCAGCAGCCTCTGCGTCTTCTTCTGGCATCCAAAGTGAAAGAGTGTCAACTAGAGAAAGTGGGTCCTCAATGGACGAAGCAGAGTGCTCAAATATTGACAACTCAAACTGTGAGCCTAATGGAGACCATAAAAGAAAACAGTCTCAAGTATTGTCTGAAACACAATATCCGAATAAATCGCCCAAAAATGATCAAGGTCAGTCATCATCAAATAAAAGTAAAGGCTCCTTCAAGAAACCAAAGGGTGGAAAGCTGGACTACAACATTCTTAGGCCATCAAAGAGTCAAACCAAAAAAGGTAGACCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PC-Esterase PMR5N

Protein Analysis

187

Amino Acids

20.48

Weight (kDa)

9.42

Isoelectric Point (pI)

62.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MPP6 PF10175 5 - 113 2.8e-11 M-phase phosphoprotein 6
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 500
AccI GTMKAC 1 cut(s) 556
AciI CCGC 1 cut(s) 10
AcsI RAATTY 1 cut(s) 201
AfiI CCNNNNNNNGG 4 cut(s) 116, 181, 182, 500
AgsI TTSAA 2 cut(s) 220, 487
AjnI CCWGG 1 cut(s) 247
AluBI AGCT 3 cut(s) 16, 126, 508
AluI AGCT 3 cut(s) 16, 126, 508
Alw21I GWGCWC 1 cut(s) 344
Alw26I GTCTC 2 cut(s) 372, 402
AlwNI CAGNNNCTG 1 cut(s) 266
AoxI GGCC 1 cut(s) 527
ApeKI GCWGC 2 cut(s) 131, 260
ApoI RAATTY 1 cut(s) 201
AseI ATTAAT 1 cut(s) 227
AspS9I GGNCC 1 cut(s) 318
AsuC2I CCSGG 1 cut(s) 183
AsuHPI GGTGA 2 cut(s) 88, 182
AvaII GGWCC 1 cut(s) 318
BbsI GAAGAC 1 cut(s) 264
Bbv12I GWGCWC 1 cut(s) 344
BbvI GCAGC 2 cut(s) 118, 272
BccI CCATC 3 cut(s) 67, 107, 538
BciT130I CCWGG 1 cut(s) 249
BclI TGATCA 1 cut(s) 445
BcnI CCSGG 1 cut(s) 183
BcoDI GTCTC 2 cut(s) 372, 402
BfaI CTAG 1 cut(s) 306
BisI GCNGC 2 cut(s) 132, 261
BlsI GCNGC 2 cut(s) 133, 262
Bme1390I CCNGG 2 cut(s) 183, 249
Bme18I GGWCC 1 cut(s) 318
BmgT120I GGNCC 1 cut(s) 318
BmiI GGNNCC 2 cut(s) 319, 481
BmrFI CCNGG 2 cut(s) 183, 249
BmrI ACTGGG 1 cut(s) 171
BmsI GCATC 1 cut(s) 291
BmuI ACTGGG 1 cut(s) 171
BoxI GACNNNNGTC 1 cut(s) 177
BpiI GAAGAC 1 cut(s) 264
BpuEI CTTGAG 1 cut(s) 384
BpuMI CCSGG 1 cut(s) 183
BsaI GGTCTC 1 cut(s) 372
BsaJI CCNNGG 1 cut(s) 247
Bsc4I CCNNNNNNNGG 4 cut(s) 116, 181, 182, 500
Bse1I ACTGG 1 cut(s) 177
BseBI CCWGG 1 cut(s) 249
BseDI CCNNGG 1 cut(s) 247
BseGI GGATG 1 cut(s) 282
BseLI CCNNNNNNNGG 4 cut(s) 116, 181, 182, 500
BseMII CTCAG 2 cut(s) 20, 74
BseNI ACTGG 1 cut(s) 177
BseRI GAGGAG 1 cut(s) 83
BseXI GCAGC 2 cut(s) 118, 272
BshFI GGCC 1 cut(s) 529
BsiHKAI GWGCWC 1 cut(s) 344
BsiSI CCGG 1 cut(s) 182
BslI CCNNNNNNNGG 4 cut(s) 116, 181, 182, 500
BsmAI GTCTC 2 cut(s) 372, 402
BsnI GGCC 1 cut(s) 529
Bso31I GGTCTC 1 cut(s) 372
Bsp1286I GDGCHC 1 cut(s) 344
Bsp143I GATC 1 cut(s) 445
BspACI CCGC 1 cut(s) 10
BspANI GGCC 1 cut(s) 529
BspCNI CTCAG 2 cut(s) 21, 73
BspLI GGNNCC 2 cut(s) 319, 481
BspTNI GGTCTC 1 cut(s) 372
BsrI ACTGG 1 cut(s) 177
BssECI CCNNGG 1 cut(s) 247
BssMI GATC 1 cut(s) 445
Bst2UI CCWGG 1 cut(s) 249
Bst4CI ACNGT 3 cut(s) 215, 365, 396
BstAPI GCANNNNNTGC 1 cut(s) 266
BstC8I GCNNGC 1 cut(s) 258
BstDEI CTNAG 4 cut(s) 29, 60, 143, 524
BstEII GGTNACC 1 cut(s) 170
BstF5I GGATG 1 cut(s) 282
BstKTI GATC 1 cut(s) 448
BstMAI GTCTC 2 cut(s) 372, 402
BstMBI GATC 1 cut(s) 445
BstMWI GCNNNNNNNGC 1 cut(s) 266
BstNI CCWGG 1 cut(s) 249
BstPAI GACNNNNGTC 1 cut(s) 177
BstPI GGTNACC 1 cut(s) 170
BstSCI CCNGG 2 cut(s) 181, 247
BstV1I GCAGC 2 cut(s) 118, 272
BstV2I GAAGAC 1 cut(s) 264
BsuRI GGCC 1 cut(s) 529
BtsCI GGATG 1 cut(s) 282
Cac8I GCNNGC 1 cut(s) 258
CaiI CAGNNNCTG 1 cut(s) 266
Cfr13I GGNCC 1 cut(s) 318
CseI GACGC 1 cut(s) 258
CviAII CATG 1 cut(s) 46
CviJI RGCY 8 cut(s) 16, 126, 256, 263, 370, 480, 508, 529
CviKI_1 RGCY 8 cut(s) 16, 126, 256, 263, 370, 480, 508, 529
DdeI CTNAG 4 cut(s) 29, 60, 143, 524
DpnI GATC 1 cut(s) 447
DpnII GATC 1 cut(s) 445
Eco31I GGTCTC 1 cut(s) 372
Eco47I GGWCC 1 cut(s) 318
Eco91I GGTNACC 1 cut(s) 170
EcoO109I RGGNCCY 1 cut(s) 318
EcoO65I GGTNACC 1 cut(s) 170
EcoRII CCWGG 1 cut(s) 247
FaeI CATG 1 cut(s) 49
FaiI YATR 3 cut(s) 47, 384, 562
FatI CATG 1 cut(s) 45
FauI CCCGC 1 cut(s) 3
FbaI TGATCA 1 cut(s) 445
FblI GTMKAC 1 cut(s) 556
Fnu4HI GCNGC 2 cut(s) 132, 261
FokI GGATG 1 cut(s) 269
Fsp4HI GCNGC 2 cut(s) 132, 261
FspBI CTAG 1 cut(s) 306
GluI GCNGC 2 cut(s) 132, 261
HaeIII GGCC 1 cut(s) 529
HapII CCGG 1 cut(s) 182
HgaI GACGC 1 cut(s) 258
Hin1II CATG 1 cut(s) 49
HincII GTYRAC 1 cut(s) 303
HindII GTYRAC 1 cut(s) 303
HinfI GANTC 1 cut(s) 538
HpaII CCGG 1 cut(s) 182
HphI GGTGA 2 cut(s) 88, 182
Hpy166II GTNNAC 2 cut(s) 303, 557
Hpy188I TCNGA 4 cut(s) 30, 63, 412, 426
Hpy188III TCNNGA 1 cut(s) 487
Hpy8I GTNNAC 2 cut(s) 303, 557
HpyAV CCTTC 2 cut(s) 161, 493
HpyCH4III ACNGT 3 cut(s) 215, 365, 396
HpyCH4V TGCA 1 cut(s) 49
HpyF10VI GCNNNNNNNGC 1 cut(s) 266
HpyF3I CTNAG 4 cut(s) 29, 60, 143, 524
Hsp92II CATG 1 cut(s) 49
Ksp22I TGATCA 1 cut(s) 445
Kzo9I GATC 1 cut(s) 445
LmnI GCTCC 3 cut(s) 13, 185, 485
LpnPI CCDG 9 cut(s) 34, 123, 190, 195, 234, 261, 264, 270, 494
Lsp1109I GCAGC 2 cut(s) 118, 272
LweI GCATC 1 cut(s) 291
MaeI CTAG 1 cut(s) 306
MaeIII GTNAC 1 cut(s) 170
MalI GATC 1 cut(s) 447
MboI GATC 1 cut(s) 445
MboII GAAGA 8 cut(s) 91, 98, 101, 104, 107, 110, 264, 267
MhlI GDGCHC 1 cut(s) 344
MluCI AATT 3 cut(s) 189, 201, 228
MlyI GAGTC 1 cut(s) 547
MnlI CCTC 4 cut(s) 24, 61, 274, 331
MseI TTAA 4 cut(s) 38, 192, 210, 227
MspI CCGG 1 cut(s) 182
MspR9I CCNGG 2 cut(s) 183, 249
MvaI CCWGG 1 cut(s) 249
MwoI GCNNNNNNNGC 1 cut(s) 266
NciI CCSGG 1 cut(s) 183
NdeII GATC 1 cut(s) 445
NlaIII CATG 1 cut(s) 49
NlaIV GGNNCC 2 cut(s) 319, 481
NmuCI GTSAC 1 cut(s) 170
PflMI CCANNNNNTGG 1 cut(s) 500
PfoI TCCNGGA 1 cut(s) 181
PkrI GCNGC 2 cut(s) 133, 262
PleI GAGTC 1 cut(s) 546
PpsI GAGTC 1 cut(s) 546
PpuMI RGGWCCY 1 cut(s) 318
PshAI GACNNNNGTC 1 cut(s) 177
PshBI ATTAAT 1 cut(s) 227
Psp5II RGGWCCY 1 cut(s) 318
Psp6I CCWGG 1 cut(s) 247
PspEI GGTNACC 1 cut(s) 170
PspGI CCWGG 1 cut(s) 247
PspN4I GGNNCC 2 cut(s) 319, 481
PspPI GGNCC 1 cut(s) 318
PspPPI RGGWCCY 1 cut(s) 318
PstNI CAGNNNCTG 1 cut(s) 266
SaqAI TTAA 4 cut(s) 38, 192, 210, 227
SatI GCNGC 2 cut(s) 132, 261
Sau3AI GATC 1 cut(s) 445
Sau96I GGNCC 1 cut(s) 318
SchI GAGTC 1 cut(s) 547
ScrFI CCNGG 2 cut(s) 183, 249
SduI GDGCHC 1 cut(s) 344
SetI ASST 7 cut(s) 18, 112, 128, 172, 454, 510, 556
SfaNI GCATC 1 cut(s) 291
SinI GGWCC 1 cut(s) 318
SmlI CTYRAG 1 cut(s) 399
SmoI CTYRAG 1 cut(s) 399
Sse9I AATT 3 cut(s) 189, 201, 228
SsiI CCGC 1 cut(s) 10
SspI AATATT 1 cut(s) 349
SspMI CTAG 1 cut(s) 306
StyD4I CCNGG 2 cut(s) 181, 247
TaaI ACNGT 3 cut(s) 215, 365, 396
TasI AATT 3 cut(s) 189, 201, 228
Tru1I TTAA 4 cut(s) 38, 192, 210, 227
Tru9I TTAA 4 cut(s) 38, 192, 210, 227
TseFI GTSAC 1 cut(s) 170
TseI GCWGC 2 cut(s) 131, 260
Tsp45I GTSAC 1 cut(s) 170
TspDTI ATGAA 2 cut(s) 34, 195
Van91I CCANNNNNTGG 1 cut(s) 500
VpaK11BI GGWCC 1 cut(s) 318
VspI ATTAAT 1 cut(s) 227
XapI RAATTY 1 cut(s) 201
XmiI GTMKAC 1 cut(s) 556
XspI CTAG 1 cut(s) 306
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.