Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0001307

Physical Location & Seq

Genomic Coordinates Reverse (-)

90217650 .. 90219869

Gene Structure 2220 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG525800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1086 bp

ATGGGTGCTTCTGAGTTTTCAAGGAAGATGGGAAATCAGAGCAGTACTCAAATGGGTACTGACCAATCTTCAAAACCCATGATTTCGTTGCCTCAAGAATCCAATCAGACCAGAAATGAGTCATCTTTTCCTGAGGGTTCTAATGGGGAAAATGGTTTGCCAAGCTATGTGGCATTGAAGTCCATAAGCAATGAGGGATTGTCTGGGTTTGAGTTGATGAATGGTTGTGATTTGTTTAATGGAAGATGGGATGAATGGGAGGAACATGTTGGGATTATTGAGAGGAAAGCGTCGAATTTTTGTCTTCTTAGGAATTCAGTGGATGATAAGAGCAGAGTTTTTGAAGCTTCTGGCAGGAGTGAATTTTGTACAGAGGGCGCCTACTATTTTGTATTCAAGGATAACAATTATTCAGTGGAGTTTGTTCAATCACCATTTCTTGTTCCAGAATCGGAGGTGCTAACCATAAATGGGTCAAAGAAGGAAACACCCGCCTGGATATGGTTCAGAGATCCTTGGATAAGTACAAAAATGCAGATGTTCTTGTCTTCAACACAGGTCACCGGTGGACTCATGAGAAAACTTCCAGAGGGCAGGGTTACTATCAAGAGGGTGCTATATCAACTGAATGTTAAAGAGGCGTATGGAAAAGCTATAACAACATGGGCCAGATGGCTGGATGCTAATATAAATCCTGAAAAAACTATTGTTTTCTTCCGGGGCTATTCACCTAATCACTTTAGCGGTGGAAGATGGAATACTGGAGGTCAATGTCATGGTCGGACAGAGCCAATTCAATACGAGGCATACAAAGGAAAATATCCGGCAAAGATGAGAATACTGGACTCAGTAATTAGGGAAATGAAGACTCCAATCTTTTATCTGAATGTTACAAAAATGACTGATTTTCGGCGGGATGCTCATCCATCCATTTACAGAAAGCAGAATTTGACAGAGGAGGAGAGACAGCTGTCTTTGCGATCCCAGGATTGCAGTCATTGGTGCCTCCCTGGTGTTCGTGATACATGGAACGAGCTTCTATATGCTCATCTCCTTAGATATATCCAGCATCGGAGGAGACCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

361

Amino Acids

41.71

Weight (kDa)

8.88

Isoelectric Point (pI)

52.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PC-Esterase	PF13839	98 - 349	2.4e-56	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001307)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G49340
fragaria_vesca	FvH4_3g44450 FvH4_3g44450 FvH4_3g44450 FvH4_3g44450 FvH4_3g44450 FvH4_3g44450 FvH4_3g44460 FvH4_3g44460 FvH4_3g44460
malus_domestica	MD03G1012500.v1.1 MD03G1012600.v1.1 MD03G1013000.v1.1 MD03G1013100.v1.1 MD03G1013400.v1.1 MD03G1013500.v1.1 MD11G1015200.v1.1
prunus_persica	Prupe.6G013100_v2.0.a1 Prupe.6G013300_v2.0.a1
pyrus_communis	pycom02g13780 pycom03g01130
rosa_chinensis	RchiOBHm_Chr5g0081011 RchiOBHm_Chr5g0081071 RchiOBHm_Chr5g0081121 RchiOBHm_Chr5g0081131
rosa_laevigata	RLG00000036911 RLG00000036913
rosa_multiflora	Rmu_sc0006274.1_g000005 Rmu_ssc0000432.1_g000079 Rmu_ssc0000432.1_g000080 Rmu_ssc0000432.1_g000113 Rmu_ssc0000432.1_g000119
rosa_roxburghii	Rroxscaffold_1G00002310 Rroxscaffold_1G00002320 Rroxscaffold_1G00002470
rosa_rugosa	Rorug05G0473500 Rorug05G0473600
rosa_samantha	Rh5AG525800 Rh5AG526000 Rh5AG526100 Rh5BG549700 Rh5BG549900 Rh5BG550300 Rh5BG550400 Rh5CG572600 Rh5CG573200 Rh5CG573300 Rh5DG560000 Rh5DG560100
rosa_wichuraiana	Rw0G002560 Rw0G002570 Rw0G012050 Rw5G048870 Rw5G048880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	377, 1002
AciI	CCGC	3 cut(s)	492, 744, 913
AclWI	GGATC	2 cut(s)	506, 975
AcsI	RAATTY	4 cut(s)	295, 313, 362, 946
AcyI	GRCGYC	1 cut(s)	378
AfaI	GTAC	4 cut(s)	46, 58, 370, 526
AfiI	CCNNNNNNNGG	2 cut(s)	471, 501
AflIII	ACRYGT	1 cut(s)	265
AgeI	ACCGGT	1 cut(s)	563
AgsI	TTSAA	8 cut(s)	21, 72, 178, 344, 397, 428, 552, 797
AjnI	CCWGG	3 cut(s)	494, 984, 1009
AluBI	AGCT	5 cut(s)	165, 347, 653, 970, 1036
AluI	AGCT	5 cut(s)	165, 347, 653, 970, 1036
Alw26I	GTCTC	2 cut(s)	958, 1072
AlwI	GGATC	2 cut(s)	506, 975
AoxI	GGCC	1 cut(s)	666
ApoI	RAATTY	4 cut(s)	295, 313, 362, 946
AsiGI	ACCGGT	1 cut(s)	563
AspLEI	GCGC	1 cut(s)	380
AspS9I	GGNCC	1 cut(s)	666
AsuC2I	CCSGG	1 cut(s)	719
AsuHPI	GGTGA	3 cut(s)	423, 553, 720
AxyI	CCTNAGG	1 cut(s)	132
BanI	GGYRCC	2 cut(s)	377, 1002
BarI	GAAGNNNNNNTAC	2 cut(s)	742, 774
BbsI	GAAGAC	3 cut(s)	296, 540, 872
BccI	CCATC	5 cut(s)	22, 240, 666, 747, 934
BciT130I	CCWGG	3 cut(s)	496, 986, 1011
BcnI	CCSGG	1 cut(s)	719
BcoDI	GTCTC	2 cut(s)	958, 1072
BfoI	RGCGCY	1 cut(s)	381
BmcAI	AGTACT	1 cut(s)	46
Bme1390I	CCNGG	4 cut(s)	496, 719, 986, 1011
BmgT120I	GGNCC	1 cut(s)	666
BmiI	GGNNCC	2 cut(s)	379, 1004
BmrFI	CCNGG	4 cut(s)	496, 719, 986, 1011
BmsI	GCATC	3 cut(s)	670, 907, 1078
BoxI	GACNNNNGTC	1 cut(s)	970
BpiI	GAAGAC	3 cut(s)	296, 540, 872
BplI	GAGNNNNNCTC	2 cut(s)	31, 63
BpmI	CTGGAG	1 cut(s)	783
BpuEI	CTTGAG	1 cut(s)	78
BpuMI	CCSGG	1 cut(s)	719
BsaBI	GATNNNNATC	1 cut(s)	921
BsaHI	GRCGYC	1 cut(s)	378
BsaI	GGTCTC	1 cut(s)	1072
BsaJI	CCNNGG	4 cut(s)	515, 718, 984, 1009
BsaWI	WCCGGW	1 cut(s)	563
Bsc4I	CCNNNNNNNGG	2 cut(s)	471, 501
Bse118I	RCCGGY	1 cut(s)	563
Bse1I	ACTGG	2 cut(s)	766, 846
Bse21I	CCTNAGG	1 cut(s)	132
Bse3DI	GCAATG	1 cut(s)	196
Bse8I	GATNNNNATC	1 cut(s)	921
BseBI	CCWGG	3 cut(s)	496, 986, 1011
BseDI	CCNNGG	4 cut(s)	515, 718, 984, 1009
BseGI	GGATG	6 cut(s)	256, 328, 685, 922, 922, 926
BseJI	GATNNNNATC	1 cut(s)	921
BseLI	CCNNNNNNNGG	2 cut(s)	471, 501
BseMI	GCAATG	1 cut(s)	196
BseMII	CTCAG	2 cut(s)	123, 861
BseNI	ACTGG	2 cut(s)	766, 846
BseRI	GAGGAG	2 cut(s)	971, 974
BshFI	GGCC	1 cut(s)	668
BshNI	GGYRCC	2 cut(s)	377, 1002
BshTI	ACCGGT	1 cut(s)	563
BsiSI	CCGG	3 cut(s)	564, 718, 824
BslI	CCNNNNNNNGG	2 cut(s)	471, 501
BsmAI	GTCTC	2 cut(s)	958, 1072
BsnI	GGCC	1 cut(s)	668
Bso31I	GGTCTC	1 cut(s)	1072
Bsp1407I	TGTACA	1 cut(s)	368
Bsp143I	GATC	2 cut(s)	511, 980
BspACI	CCGC	3 cut(s)	492, 744, 913
BspANI	GGCC	1 cut(s)	668
BspCNI	CTCAG	3 cut(s)	4, 124, 860
BspHI	TCATGA	1 cut(s)	573
BspLI	GGNNCC	2 cut(s)	379, 1004
BspPI	GGATC	2 cut(s)	506, 975
BspT107I	GGYRCC	2 cut(s)	377, 1002
BspTNI	GGTCTC	1 cut(s)	1072
BsrDI	GCAATG	1 cut(s)	196
BsrFI	RCCGGY	1 cut(s)	563
BsrGI	TGTACA	1 cut(s)	368
BsrI	ACTGG	2 cut(s)	766, 846
BssAI	RCCGGY	1 cut(s)	563
BssECI	CCNNGG	4 cut(s)	515, 718, 984, 1009
BssMI	GATC	2 cut(s)	511, 980
BssNI	GRCGYC	1 cut(s)	378
BssT1I	CCWWGG	1 cut(s)	515
Bst2UI	CCWGG	3 cut(s)	496, 986, 1011
BstACI	GRCGYC	1 cut(s)	378
BstAUI	TGTACA	1 cut(s)	368
BstDEI	CTNAG	5 cut(s)	12, 132, 308, 847, 1055
BstEII	GGTNACC	1 cut(s)	559
BstF5I	GGATG	6 cut(s)	256, 328, 685, 922, 922, 926
BstH2I	RGCGCY	1 cut(s)	381
BstHHI	GCGC	1 cut(s)	380
BstKTI	GATC	2 cut(s)	514, 983
BstMAI	GTCTC	2 cut(s)	958, 1072
BstMBI	GATC	2 cut(s)	511, 980
BstMWI	GCNNNNNNNGC	1 cut(s)	976
BstNI	CCWGG	3 cut(s)	496, 986, 1011
BstNSI	RCATGY	1 cut(s)	269
BstPAI	GACNNNNGTC	1 cut(s)	970
BstPI	GGTNACC	1 cut(s)	559
BstSCI	CCNGG	4 cut(s)	494, 717, 984, 1009
BstV2I	GAAGAC	3 cut(s)	296, 540, 872
BstX2I	RGATCY	1 cut(s)	511
BstXI	CCANNNNNNTGG	1 cut(s)	676
BstYI	RGATCY	1 cut(s)	511
Bsu36I	CCTNAGG	1 cut(s)	132
BsuRI	GGCC	1 cut(s)	668
BtsCI	GGATG	6 cut(s)	256, 328, 685, 922, 922, 926
BtsIMutI	CAGTG	2 cut(s)	324, 420
CciI	TCATGA	1 cut(s)	573
CfoI	GCGC	1 cut(s)	380
Cfr10I	RCCGGY	1 cut(s)	563
Cfr13I	GGNCC	1 cut(s)	666
CseI	GACGC	1 cut(s)	279
Csp6I	GTAC	4 cut(s)	45, 57, 369, 525
CspAI	ACCGGT	1 cut(s)	563
CspCI	CAANNNNNGTGG	2 cut(s)	150, 185
CviAII	CATG	6 cut(s)	79, 266, 574, 663, 776, 1026
CviJI	RGCY	9 cut(s)	165, 347, 653, 668, 676, 723, 790, 970, 1036
CviKI_1	RGCY	9 cut(s)	165, 347, 653, 668, 676, 723, 790, 970, 1036
CviQI	GTAC	4 cut(s)	45, 57, 369, 525
DdeI	CTNAG	5 cut(s)	12, 132, 308, 847, 1055
DinI	GGCGCC	1 cut(s)	379
DpnI	GATC	2 cut(s)	513, 982
DpnII	GATC	2 cut(s)	511, 980
Eco130I	CCWWGG	1 cut(s)	515
Eco31I	GGTCTC	1 cut(s)	1072
Eco81I	CCTNAGG	1 cut(s)	132
Eco91I	GGTNACC	1 cut(s)	559
EcoO65I	GGTNACC	1 cut(s)	559
EcoRI	GAATTC	1 cut(s)	313
EcoRII	CCWGG	3 cut(s)	494, 984, 1009
EcoT14I	CCWWGG	1 cut(s)	515
EgeI	GGCGCC	1 cut(s)	379
EheI	GGCGCC	1 cut(s)	379
ErhI	CCWWGG	1 cut(s)	515
FaeI	CATG	6 cut(s)	82, 269, 577, 666, 779, 1029
FatI	CATG	6 cut(s)	78, 265, 573, 662, 775, 1025
FauI	CCCGC	2 cut(s)	499, 906
FokI	GGATG	6 cut(s)	263, 335, 692, 909, 913, 929
GlaI	GCGC	1 cut(s)	379
GsuI	CTGGAG	1 cut(s)	783
HaeII	RGCGCY	1 cut(s)	381
HaeIII	GGCC	1 cut(s)	668
HapII	CCGG	3 cut(s)	564, 718, 824
HgaI	GACGC	1 cut(s)	279
HhaI	GCGC	1 cut(s)	380
Hin1I	GRCGYC	1 cut(s)	378
Hin1II	CATG	6 cut(s)	82, 269, 577, 666, 779, 1029
Hin6I	GCGC	1 cut(s)	378
HinP1I	GCGC	1 cut(s)	378
HindIII	AAGCTT	1 cut(s)	345
HinfI	GANTC	6 cut(s)	98, 119, 449, 570, 845, 868
HpaII	CCGG	3 cut(s)	564, 718, 824
HphI	GGTGA	3 cut(s)	423, 553, 720
Hpy166II	GTNNAC	1 cut(s)	569
Hpy188I	TCNGA	8 cut(s)	13, 39, 108, 454, 509, 783, 885, 1074
Hpy188III	TCNNGA	8 cut(s)	95, 131, 446, 574, 587, 607, 695, 1019
Hpy8I	GTNNAC	1 cut(s)	569
Hpy99I	CGWCG	1 cut(s)	295
HpyAV	CCTTC	1 cut(s)	475
HpyCH4V	TGCA	2 cut(s)	535, 993
HpyF10VI	GCNNNNNNNGC	1 cut(s)	976
HpyF3I	CTNAG	5 cut(s)	12, 132, 308, 847, 1055
Hsp92I	GRCGYC	1 cut(s)	378
Hsp92II	CATG	6 cut(s)	82, 269, 577, 666, 779, 1029
HspAI	GCGC	1 cut(s)	378
KasI	GGCGCC	1 cut(s)	377
Kzo9I	GATC	2 cut(s)	511, 980
LweI	GCATC	3 cut(s)	670, 907, 1078
MaeIII	GTNAC	3 cut(s)	559, 598, 889
MalI	GATC	2 cut(s)	513, 982
MboI	GATC	2 cut(s)	511, 980
MboII	GAAGA	8 cut(s)	37, 60, 255, 296, 540, 706, 762, 877
MflI	RGATCY	1 cut(s)	511
MluCI	AATT	7 cut(s)	295, 313, 362, 406, 792, 852, 946
Mly113I	GGCGCC	1 cut(s)	378
MlyI	GAGTC	4 cut(s)	128, 564, 839, 862
MmeI	TCCRAC	1 cut(s)	761
MseI	TTAA	2 cut(s)	237, 633
MspA1I	CMGCKG	1 cut(s)	970
MspI	CCGG	3 cut(s)	564, 718, 824
MspR9I	CCNGG	4 cut(s)	496, 719, 986, 1011
MvaI	CCWGG	3 cut(s)	496, 986, 1011
MwoI	GCNNNNNNNGC	1 cut(s)	976
NarI	GGCGCC	1 cut(s)	378
NciI	CCSGG	1 cut(s)	719
NdeII	GATC	2 cut(s)	511, 980
NlaIII	CATG	6 cut(s)	82, 269, 577, 666, 779, 1029
NlaIV	GGNNCC	2 cut(s)	379, 1004
NmuCI	GTSAC	1 cut(s)	559
NspI	RCATGY	1 cut(s)	269
PagI	TCATGA	1 cut(s)	573
PciI	ACATGT	1 cut(s)	265
PfeI	GAWTC	2 cut(s)	98, 449
PinAI	ACCGGT	1 cut(s)	563
PleI	GAGTC	4 cut(s)	127, 564, 839, 862
PluTI	GGCGCC	1 cut(s)	381
PpsI	GAGTC	4 cut(s)	127, 564, 839, 862
PscI	ACATGT	1 cut(s)	265
PshAI	GACNNNNGTC	1 cut(s)	970
Psp6I	CCWGG	3 cut(s)	494, 984, 1009
PspEI	GGTNACC	1 cut(s)	559
PspGI	CCWGG	3 cut(s)	494, 984, 1009
PspN4I	GGNNCC	2 cut(s)	379, 1004
PspPI	GGNCC	1 cut(s)	666
PsuI	RGATCY	1 cut(s)	511
PvuII	CAGCTG	1 cut(s)	970
RsaI	GTAC	4 cut(s)	46, 58, 370, 526
RsaNI	GTAC	4 cut(s)	45, 57, 369, 525
SaqAI	TTAA	2 cut(s)	237, 633
Sau3AI	GATC	2 cut(s)	511, 980
Sau96I	GGNCC	1 cut(s)	666
ScaI	AGTACT	1 cut(s)	46
SchI	GAGTC	4 cut(s)	128, 564, 839, 862
ScrFI	CCNGG	4 cut(s)	496, 719, 986, 1011
SetI	ASST	9 cut(s)	167, 349, 459, 561, 655, 733, 769, 972, 1038
SfaNI	GCATC	3 cut(s)	670, 907, 1078
SfoI	GGCGCC	1 cut(s)	379
SgrAI	CRCCGGYG	1 cut(s)	563
SmlI	CTYRAG	1 cut(s)	93
SmoI	CTYRAG	1 cut(s)	93
Sse9I	AATT	7 cut(s)	295, 313, 362, 406, 792, 852, 946
SsiI	CCGC	3 cut(s)	492, 744, 913
SspDI	GGCGCC	1 cut(s)	377
StyD4I	CCNGG	4 cut(s)	494, 717, 984, 1009
StyI	CCWWGG	1 cut(s)	515
TaqI	TCGA	1 cut(s)	293
TasI	AATT	7 cut(s)	295, 313, 362, 406, 792, 852, 946
TatI	WGTACW	3 cut(s)	44, 368, 524
TfiI	GAWTC	2 cut(s)	98, 449
Tru1I	TTAA	2 cut(s)	237, 633
Tru9I	TTAA	2 cut(s)	237, 633
TscAI	CASTG	2 cut(s)	324, 420
TseFI	GTSAC	1 cut(s)	559
Tsp45I	GTSAC	1 cut(s)	559
TspDTI	ATGAA	3 cut(s)	233, 267, 878
TspRI	CASTG	2 cut(s)	324, 420
XapI	RAATTY	4 cut(s)	295, 313, 362, 946
XceI	RCATGY	1 cut(s)	269
ZrmI	AGTACT	1 cut(s)	46

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.