Rh5BG550300

Protein trichome birefringence-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0001307
Physical Location & Seq
Reverse (-)
87495836 .. 87498459
2624 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG550300.1

Sequence Viewer

Length: 1578 bp
ATGGCAGATTCCTCACCCCAAACTACAAAGCACCACTCACCCACTAAAGCAGAGCCCAAGGCTTCTCTTTCTTCCATCTTTTTCACTTCAAGAAAAGCCTCCGCCTTTGCTTATGGAATCGCCTTTGCTCTCATTGCCTTCACTTCCTTCTGGGTTTTCAACCCATCTGGCTACTCTTTCCCTTTTAGCTTCAACACCATCTTCTACTCTTCTCCTTCCAACTCTTCTCAGGAAGTTACTAAATCCCCAAAGATCGAATCTTTACCACATTTGGGCAGCAATGGAAGTTTGAACAGTGAAATGGGTGCTTCTCAGTTTTCCGGGAAGATGGGAAATCAGAGCAGTACTCAAATGGGTACTGATCAATCTTCAAAACCCGTGATTTCTTTGCCCCAAGAATCCAATCACACCAGAAATGAGTCTTCTTTTTCTGAAGGTTCTAGTGGGGAAAATGGTTTGCCAAGCTATGTGGCATTGAAGTCCATAAGCAATGAGGGGTTGTCTGGGTTTGAGTTGATTAATGGTTGTGATTTGTTTGATGGAAGATGGGTGAGAGATGATTCATACCCACTTTATGCTGCTGGGTCTTGTCCTTACATTGATGAATCTTTCAATTGTTTTCTCAATAGTAGGCCTGATAATGGTTATGAAAAGTATAGATGGCAACCCAAAAACTGCAATCTCCCAAGGATGAATGGAAGGAACATGTTGGAATTATTGAGAGGAAAGCGTCTAGTTTTTGTTGGTGATTCTCTCAACAGGAATATGTGGGAGTCTTTGGTTTGTCTTCTTAGGAATTCAGTGGATGATAAGAGCAGAGTTTTTGAAGCTTCTGGCAGGAGCGAATTTCGTACAGAGGGCGCCTATTTTTTTGTATTCAAGGATTACAATTGTTCACTGGAGTTTGTTCAATCACCATTTCTAGTTCAAGAATCGGAGGTGCTAACCACAAATGGGTCAAAGAAGGAAACACTGCGCCTGGATATGATTCAGAGATCCTTGGATAAGTACAAAAGTGCAGATGTTCTCGTCTTCAACACAGGTCACTGGTGGACTCATGAGAAAACTTCCAGAGGGCAGGGTTACTATCAAGAGGGTGAATATATCTATAGTCAATTGAATGTCAAAGAGGCGTATGGAAAAGCTATAACAACATGGGCCAGATGGCTGGATGCTAATATAAATCCTGAAAAAACTGTTGTTTTCTTCCGGGGCTATTCGCCCAATCACTTTAGTGGTGGAAGATGGAATACTGGAGGTCAATGTCATGGTCGGACAGAGCCAGTTCAATACGAGGCATACAAAGGAAAATATCCTGCAAAGATGAGAATACTGGACTCAGTAATCAGGGAAATGAAGATTCCAATCTTTTATCTGAATGTTACAAAAATGACTGATTTTCGGAGGGATGCTCACCCATCCATTTACAGAAAGCGGAATTTGACAGAGGAGGAGAGACAGTTGTCTTTGAGATCCCAGGATTGCAGTCATTGGTGCCTCCCTGGTGTTCCTGATACATGGAACGAGCTTCTATATGCTCATCTCCTTACATATACCCTGCAGCGGAGGAGACCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PC-Esterase PMR5N

Protein Analysis

525

Amino Acids

59.85

Weight (kDa)

8.75

Isoelectric Point (pI)

53.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMR5N PF14416 175 - 227 1.1e-22 PMR5 N terminal Domain
PC-Esterase PF13839 228 - 513 2.3e-101 GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 860, 1494
AciI CCGC 3 cut(s) 102, 1435, 1564
AclWI GGATC 2 cut(s) 990, 1467
AcsI RAATTY 3 cut(s) 796, 845, 1438
AcuI CTGAAG 1 cut(s) 453
AcyI GRCGYC 1 cut(s) 861
AfaI GTAC 4 cut(s) 346, 358, 853, 1010
AfiI CCNNNNNNNGG 4 cut(s) 272, 641, 954, 1563
AflIII ACRYGT 1 cut(s) 705
AjnI CCWGG 3 cut(s) 978, 1476, 1501
AleI CACNNNNGTG 1 cut(s) 1233
AluBI AGCT 5 cut(s) 189, 465, 830, 1145, 1528
AluI AGCT 5 cut(s) 189, 465, 830, 1145, 1528
Alw26I GTCTC 2 cut(s) 1450, 1564
AlwI GGATC 2 cut(s) 990, 1467
AoxI GGCC 2 cut(s) 632, 1158
ApeKI GCWGC 3 cut(s) 276, 578, 1561
ApoI RAATTY 3 cut(s) 796, 845, 1438
AseI ATTAAT 1 cut(s) 519
AspLEI GCGC 2 cut(s) 863, 978
AspS9I GGNCC 1 cut(s) 1158
AsuC2I CCSGG 2 cut(s) 322, 1211
AsuHPI GGTGA 7 cut(s) 6, 30, 562, 758, 906, 1109, 1406
BanI GGYRCC 2 cut(s) 860, 1494
BanII GRGCYC 1 cut(s) 57
BarI GAAGNNNNNNTAC 2 cut(s) 1234, 1266
BbsI GAAGAC 3 cut(s) 414, 779, 1024
BbvI GCAGC 3 cut(s) 288, 565, 1573
BciT130I CCWGG 3 cut(s) 980, 1478, 1503
BclI TGATCA 1 cut(s) 361
BcnI CCSGG 2 cut(s) 322, 1211
BcoDI GTCTC 2 cut(s) 1450, 1564
BfaI CTAG 3 cut(s) 441, 734, 923
BfmI CTRYAG 2 cut(s) 1108, 1559
BfoI RGCGCY 1 cut(s) 864
BisI GCNGC 3 cut(s) 277, 579, 1562
BlsI GCNGC 3 cut(s) 278, 580, 1563
BmcAI AGTACT 1 cut(s) 346
Bme1390I CCNGG 5 cut(s) 322, 980, 1211, 1478, 1503
BmgT120I GGNCC 1 cut(s) 1158
BmiI GGNNCC 2 cut(s) 862, 1496
BmrFI CCNGG 5 cut(s) 322, 980, 1211, 1478, 1503
BmsI GCATC 2 cut(s) 1162, 1399
BoxI GACNNNNGTC 1 cut(s) 1462
BpiI GAAGAC 3 cut(s) 414, 779, 1024
BplI GAGNNNNNCTC 4 cut(s) 331, 363, 1396, 1428
BpmI CTGGAG 2 cut(s) 920, 1275
BpuMI CCSGG 2 cut(s) 322, 1211
BsaBI GATNNNNATC 1 cut(s) 1364
BsaHI GRCGYC 1 cut(s) 861
BsaI GGTCTC 1 cut(s) 1564
BsaJI CCNNGG 6 cut(s) 57, 686, 999, 1210, 1476, 1501
BsaXI ACNNNNNCTCC 2 cut(s) 1445, 1475
Bsc4I CCNNNNNNNGG 4 cut(s) 272, 641, 954, 1563
Bse1I ACTGG 5 cut(s) 903, 1052, 1258, 1283, 1338
Bse3DI GCAATG 3 cut(s) 132, 286, 496
Bse8I GATNNNNATC 1 cut(s) 1364
BseBI CCWGG 3 cut(s) 980, 1478, 1503
BseDI CCNNGG 6 cut(s) 57, 686, 999, 1210, 1476, 1501
BseGI GGATG 5 cut(s) 696, 811, 1177, 1414, 1418
BseJI GATNNNNATC 1 cut(s) 1364
BseLI CCNNNNNNNGG 4 cut(s) 272, 641, 954, 1563
BseMI GCAATG 3 cut(s) 132, 286, 496
BseMII CTCAG 3 cut(s) 242, 326, 1353
BseNI ACTGG 5 cut(s) 903, 1052, 1258, 1283, 1338
BseRI GAGGAG 2 cut(s) 1463, 1466
BseXI GCAGC 3 cut(s) 288, 565, 1573
BseYI CCCAGC 1 cut(s) 581
BsgI GTGCAG 1 cut(s) 1038
BshFI GGCC 2 cut(s) 634, 1160
BshNI GGYRCC 2 cut(s) 860, 1494
BsiSI CCGG 2 cut(s) 321, 1210
BslI CCNNNNNNNGG 4 cut(s) 272, 641, 954, 1563
BsmAI GTCTC 2 cut(s) 1450, 1564
BsnI GGCC 2 cut(s) 634, 1160
Bso31I GGTCTC 1 cut(s) 1564
Bsp1286I GDGCHC 1 cut(s) 57
Bsp143I GATC 4 cut(s) 252, 361, 995, 1472
BspACI CCGC 3 cut(s) 102, 1435, 1564
BspANI GGCC 2 cut(s) 634, 1160
BspCNI CTCAG 3 cut(s) 241, 325, 1352
BspHI TCATGA 1 cut(s) 1057
BspLI GGNNCC 2 cut(s) 862, 1496
BspMAI CTGCAG 1 cut(s) 1563
BspPI GGATC 2 cut(s) 990, 1467
BspT107I GGYRCC 2 cut(s) 860, 1494
BspTNI GGTCTC 1 cut(s) 1564
BsrDI GCAATG 3 cut(s) 132, 286, 496
BsrI ACTGG 5 cut(s) 903, 1052, 1258, 1283, 1338
BssECI CCNNGG 6 cut(s) 57, 686, 999, 1210, 1476, 1501
BssMI GATC 4 cut(s) 252, 361, 995, 1472
BssNI GRCGYC 1 cut(s) 861
BssT1I CCWWGG 3 cut(s) 57, 686, 999
Bst2UI CCWGG 3 cut(s) 980, 1478, 1503
Bst4CI ACNGT 3 cut(s) 296, 1198, 1461
Bst6I CTCTTC 2 cut(s) 214, 229
BstACI GRCGYC 1 cut(s) 861
BstDEI CTNAG 4 cut(s) 228, 312, 791, 1339
BstF5I GGATG 5 cut(s) 696, 811, 1177, 1414, 1418
BstH2I RGCGCY 1 cut(s) 864
BstHHI GCGC 2 cut(s) 863, 978
BstKTI GATC 4 cut(s) 255, 364, 998, 1475
BstMAI GTCTC 2 cut(s) 1450, 1564
BstMBI GATC 4 cut(s) 252, 361, 995, 1472
BstMWI GCNNNNNNNGC 1 cut(s) 134
BstNI CCWGG 3 cut(s) 980, 1478, 1503
BstNSI RCATGY 1 cut(s) 709
BstPAI GACNNNNGTC 1 cut(s) 1462
BstSCI CCNGG 5 cut(s) 320, 978, 1209, 1476, 1501
BstSFI CTRYAG 2 cut(s) 1108, 1559
BstV1I GCAGC 3 cut(s) 288, 565, 1573
BstV2I GAAGAC 3 cut(s) 414, 779, 1024
BstX2I RGATCY 2 cut(s) 995, 1472
BstXI CCANNNNNNTGG 1 cut(s) 1168
BstYI RGATCY 2 cut(s) 995, 1472
BsuRI GGCC 2 cut(s) 634, 1160
BtsCI GGATG 5 cut(s) 696, 811, 1177, 1414, 1418
BtsI GCAGTG 1 cut(s) 971
BtsIMutI CAGTG 5 cut(s) 301, 807, 896, 971, 1045
CciI TCATGA 1 cut(s) 1057
CfoI GCGC 2 cut(s) 863, 978
Cfr13I GGNCC 1 cut(s) 1158
CseI GACGC 1 cut(s) 719
Csp6I GTAC 4 cut(s) 345, 357, 852, 1009
CspCI CAANNNNNGTGG 2 cut(s) 450, 485
CviAII CATG 5 cut(s) 706, 1058, 1155, 1268, 1518
CviQI GTAC 4 cut(s) 345, 357, 852, 1009
DdeI CTNAG 4 cut(s) 228, 312, 791, 1339
DinI GGCGCC 1 cut(s) 862
DpnI GATC 4 cut(s) 254, 363, 997, 1474
DpnII GATC 4 cut(s) 252, 361, 995, 1472
Eam1104I CTCTTC 2 cut(s) 214, 229
EarI CTCTTC 2 cut(s) 214, 229
EciI GGCGGA 1 cut(s) 91
Eco130I CCWWGG 3 cut(s) 57, 686, 999
Eco147I AGGCCT 1 cut(s) 634
Eco24I GRGCYC 1 cut(s) 57
Eco31I GGTCTC 1 cut(s) 1564
Eco57I CTGAAG 1 cut(s) 453
EcoRI GAATTC 1 cut(s) 796
EcoRII CCWGG 3 cut(s) 978, 1476, 1501
EcoT14I CCWWGG 3 cut(s) 57, 686, 999
EcoT38I GRGCYC 1 cut(s) 57
EgeI GGCGCC 1 cut(s) 862
EheI GGCGCC 1 cut(s) 862
ErhI CCWWGG 3 cut(s) 57, 686, 999
FaeI CATG 5 cut(s) 709, 1061, 1158, 1271, 1521
FatI CATG 5 cut(s) 705, 1057, 1154, 1267, 1517
FbaI TGATCA 1 cut(s) 361
Fnu4HI GCNGC 3 cut(s) 277, 579, 1562
FokI GGATG 5 cut(s) 703, 818, 1184, 1405, 1421
FriOI GRGCYC 1 cut(s) 57
Fsp4HI GCNGC 3 cut(s) 277, 579, 1562
FspBI CTAG 3 cut(s) 441, 734, 923
GlaI GCGC 2 cut(s) 862, 977
GluI GCNGC 3 cut(s) 277, 579, 1562
GsaI CCCAGC 1 cut(s) 585
GsuI CTGGAG 2 cut(s) 920, 1275
HaeII RGCGCY 1 cut(s) 864
HaeIII GGCC 2 cut(s) 634, 1160
HapII CCGG 2 cut(s) 321, 1210
HgaI GACGC 1 cut(s) 719
HhaI GCGC 2 cut(s) 863, 978
Hin1I GRCGYC 1 cut(s) 861
Hin1II CATG 5 cut(s) 709, 1061, 1158, 1271, 1521
Hin6I GCGC 2 cut(s) 861, 976
HinP1I GCGC 2 cut(s) 861, 976
HindIII AAGCTT 1 cut(s) 828
HpaII CCGG 2 cut(s) 321, 1210
HphI GGTGA 7 cut(s) 6, 30, 562, 758, 906, 1109, 1406
Hpy166II GTNNAC 2 cut(s) 896, 1053
Hpy188I TCNGA 7 cut(s) 339, 433, 937, 993, 1275, 1377, 1404
Hpy188III TCNNGA 8 cut(s) 90, 230, 929, 1058, 1071, 1091, 1187, 1511
Hpy8I GTNNAC 2 cut(s) 896, 1053
HpyAV CCTTC 6 cut(s) 148, 157, 225, 428, 693, 958
HpyCH4III ACNGT 3 cut(s) 296, 1198, 1461
HpyCH4V TGCA 5 cut(s) 678, 1019, 1319, 1485, 1561
HpyF10VI GCNNNNNNNGC 1 cut(s) 134
HpyF3I CTNAG 4 cut(s) 228, 312, 791, 1339
Hsp92I GRCGYC 1 cut(s) 861
Hsp92II CATG 5 cut(s) 709, 1061, 1158, 1271, 1521
HspAI GCGC 2 cut(s) 861, 976
KasI GGCGCC 1 cut(s) 860
Ksp22I TGATCA 1 cut(s) 361
Kzo9I GATC 4 cut(s) 252, 361, 995, 1472
LmnI GCTCC 1 cut(s) 840
Lsp1109I GCAGC 3 cut(s) 288, 565, 1573
LweI GCATC 2 cut(s) 1162, 1399
MaeI CTAG 3 cut(s) 441, 734, 923
MaeIII GTNAC 4 cut(s) 235, 1043, 1082, 1381
MalI GATC 4 cut(s) 254, 363, 997, 1474
MboI GATC 4 cut(s) 252, 361, 995, 1472
MfeI CAATTG 3 cut(s) 613, 889, 1115
MflI RGATCY 2 cut(s) 995, 1472
MhlI GDGCHC 1 cut(s) 57
MluCI AATT 7 cut(s) 613, 713, 796, 845, 889, 1115, 1438
Mly113I GGCGCC 1 cut(s) 861
MlyI GAGTC 4 cut(s) 428, 782, 1048, 1331
MmeI TCCRAC 3 cut(s) 243, 690, 1253
MseI TTAA 1 cut(s) 519
MslI CAYNNNNRTG 1 cut(s) 1233
MspA1I CMGCKG 1 cut(s) 1564
MspI CCGG 2 cut(s) 321, 1210
MspR9I CCNGG 5 cut(s) 322, 980, 1211, 1478, 1503
MunI CAATTG 3 cut(s) 613, 889, 1115
MvaI CCWGG 3 cut(s) 980, 1478, 1503
MwoI GCNNNNNNNGC 1 cut(s) 134
NarI GGCGCC 1 cut(s) 861
NciI CCSGG 2 cut(s) 322, 1211
NdeII GATC 4 cut(s) 252, 361, 995, 1472
NlaIII CATG 5 cut(s) 709, 1061, 1158, 1271, 1521
NlaIV GGNNCC 2 cut(s) 862, 1496
NmuCI GTSAC 1 cut(s) 1043
NspI RCATGY 1 cut(s) 709
OliI CACNNNNGTG 1 cut(s) 1233
PagI TCATGA 1 cut(s) 1057
PceI AGGCCT 1 cut(s) 634
PciI ACATGT 1 cut(s) 705
PfoI TCCNGGA 1 cut(s) 320
PkrI GCNGC 3 cut(s) 278, 580, 1563
PleI GAGTC 4 cut(s) 427, 781, 1048, 1331
PluTI GGCGCC 1 cut(s) 864
PpsI GAGTC 4 cut(s) 427, 781, 1048, 1331
PscI ACATGT 1 cut(s) 705
PshAI GACNNNNGTC 1 cut(s) 1462
PshBI ATTAAT 1 cut(s) 519
Psp6I CCWGG 3 cut(s) 978, 1476, 1501
PspFI CCCAGC 1 cut(s) 581
PspGI CCWGG 3 cut(s) 978, 1476, 1501
PspN4I GGNNCC 2 cut(s) 862, 1496
PspPI GGNCC 1 cut(s) 1158
PstI CTGCAG 1 cut(s) 1563
PsuI RGATCY 2 cut(s) 995, 1472
RsaI GTAC 4 cut(s) 346, 358, 853, 1010
RsaNI GTAC 4 cut(s) 345, 357, 852, 1009
RseI CAYNNNNRTG 1 cut(s) 1233
SaqAI TTAA 1 cut(s) 519
SatI GCNGC 3 cut(s) 277, 579, 1562
Sau3AI GATC 4 cut(s) 252, 361, 995, 1472
Sau96I GGNCC 1 cut(s) 1158
ScaI AGTACT 1 cut(s) 346
SchI GAGTC 4 cut(s) 428, 782, 1048, 1331
ScrFI CCNGG 5 cut(s) 322, 980, 1211, 1478, 1503
SduI GDGCHC 1 cut(s) 57
SetI ASST 9 cut(s) 191, 439, 467, 832, 942, 1045, 1147, 1261, 1530
SfaNI GCATC 2 cut(s) 1162, 1399
SfcI CTRYAG 2 cut(s) 1108, 1559
SfoI GGCGCC 1 cut(s) 862
SmiMI CAYNNNNRTG 1 cut(s) 1233
Sse9I AATT 7 cut(s) 613, 713, 796, 845, 889, 1115, 1438
SseBI AGGCCT 1 cut(s) 634
SsiI CCGC 3 cut(s) 102, 1435, 1564
SspDI GGCGCC 1 cut(s) 860
SspMI CTAG 3 cut(s) 441, 734, 923
StuI AGGCCT 1 cut(s) 634
StyD4I CCNGG 5 cut(s) 320, 978, 1209, 1476, 1501
StyI CCWWGG 3 cut(s) 57, 686, 999
TaaI ACNGT 3 cut(s) 296, 1198, 1461
TaqI TCGA 1 cut(s) 255
TasI AATT 7 cut(s) 613, 713, 796, 845, 889, 1115, 1438
TatI WGTACW 2 cut(s) 344, 1008
Tru1I TTAA 1 cut(s) 519
Tru9I TTAA 1 cut(s) 519
TscAI CASTG 5 cut(s) 301, 807, 903, 978, 1052
TseFI GTSAC 1 cut(s) 1043
TseI GCWGC 3 cut(s) 276, 578, 1561
Tsp45I GTSAC 1 cut(s) 1043
TspDTI ATGAA 5 cut(s) 552, 618, 663, 707, 1370
TspRI CASTG 5 cut(s) 301, 807, 903, 978, 1052
VspI ATTAAT 1 cut(s) 519
XapI RAATTY 3 cut(s) 796, 845, 1438
XceI RCATGY 1 cut(s) 709
XspI CTAG 3 cut(s) 441, 734, 923
ZrmI AGTACT 1 cut(s) 346
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.